jgi.p|Nanoce1779_2|645801, mRNA_1574 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|645801
Unique NamemRNA_1574
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1364
Alignment locationscaffold_1:980364..981727 -

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Properties
Property NameValue
TranscriptId645887
TrackFilteredModels2
ProteinId645801
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:980364..981727 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|645801gene_1574Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|645801mRNA_1574-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1574CDS_1574Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1574 ID=mRNA_1574|Name=jgi.p|Nanoce1779_2|645801|organism=Nannochloropsis oceanica|type=mRNA|length=1364bp
TCTTGCGCCAGTCAGGACTCGTCCTTCTTCTCTCTTTATGTAAGAATATG
CATGTGTCACTGTTTGTGCATGTAGGGCTGGCTGCATGGATGATTAGCTA
GGGGAAGGGAAATACCGAACCCGGAGGGAGGATCGACGCGAAGGCGGAGG
GAAGGACGGAGAGGGAGCCTTCTGTTGTGGGCGTTGTACACCAGCCAACA
CCACCGACTCAAGGAGACCTTGTAAAGCGCACTCATGTACGACCATCGAA
AGGGTGTTCACAGTGATCCCGTCACAGCGGCCCTGGTCCCTTTCTCTGAT
AAGGAGGCAAAGGTTTGAAGAAAACGCGCCTGGCAAGGCCTTCATTGCCG
AGTTGGGGAATGGCGTTAAATTTAGTCCCAAAATGGACCATTTAGTCTGT
TATTTACCTGGAACTTTAGCCCTGGGCGTCTACCATGGCCTGGACCCCGA
GGGGACACAAGGACACATGGAGATGGCAAAAGAGTTGATGGTCACTTGTT
TTGAGTTCTACAACCATACAGCCACGGGACTTAGGGTGGATGCGTCCAAT
ACTGCCCGGCGGTCCTCGTCTGGGTCCTCAGATATGTATGTAAAACCAGC
AGACGCCCACAATATTCTGAGACCCGAGACGGTGGAAAGTTTATTTTACC
TTTACCGAGTGACGGAGGACAGGGTATACCAGGAGTGGGCGTGGCAGATC
TTTGTGGCGTTTGAGAAGCATGCCAAGATTGAGACGGGAGGTTACTCGGG
TTTGCGGAATGTCGAGGCGCTGGACTCGGCGCGGATTGATAAAATGGAGA
GCTTCTTTTTAGGGGAGACGTTGAAGTATTTTTATCTCTTGTTTGCGGAC
CCGGCACTGTTGTCGTTGGATGAGGTGGTGTTCAATACGGAGGCACATCC
CTTCCCGGTTTTAGCTCTGGAGGAGGATTGGTTGGTGTATAGAGGGAAGG
GAGAGCAACCTCCCGTTGCTGAAGGGAAGGAAAAGGAGGAGGATGTCGAG
GTCAAGGCGGAGGAGATGGAGGCTGAGAAAGGGAGCGCAAGGGAGGAGAA
CGTGAAAGAGGAAAGAGATGAGGAGGAAGGGATAGAAGAGATGGAAGAGG
GGTTTAGAAGAGAAGAGGAGGATGAAGTGTTGACGGCTGAAATCTAGAGT
GTGAGAGGAAGGGGGGCGAAGGCAAGTAGGGTGGGAGGGGAAGAACTTGG
GCTTGGTGTGATTCAAATGACTGATGAAATGAGAAGGAGACAGACGACTG
TGAAAGAGTATTGGACACTCTCAACCTAATGCGTTCAATTCATTTTATTA
TAAGTTAGCGAAGAACAGCCCAACAGCCCAACAGCCCATTTCAAACCTTG
TGTGCTGCCGGCTC
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protein sequence of jgi.p|Nanoce1779_2|645801

>mRNA_1574-protein ID=mRNA_1574-protein|Name=jgi.p|Nanoce1779_2|645801|organism=Nannochloropsis oceanica|type=polypeptide|length=255bp
MDHLVCYLPGTLALGVYHGLDPEGTQGHMEMAKELMVTCFEFYNHTATGL
RVDASNTARRSSSGSSDMYVKPADAHNILRPETVESLFYLYRVTEDRVYQ
EWAWQIFVAFEKHAKIETGGYSGLRNVEALDSARIDKMESFFLGETLKYF
YLLFADPALLSLDEVVFNTEAHPFPVLALEEDWLVYRGKGEQPPVAEGKE
KEEDVEVKAEEMEAEKGSAREENVKEERDEEEGIEEMEEGFRREEEDEVL
TAEI*
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mRNA from alignment at scaffold_1:980364..981727-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1574 ID=mRNA_1574|Name=jgi.p|Nanoce1779_2|645801|organism=Nannochloropsis oceanica|type=mRNA|length=1364bp|location=Sequence derived from alignment at scaffold_1:980364..981727- (Nannochloropsis oceanica)
TCTTGCGCCAGTCAGGACTCGTCCTTCTTCTCTCTTTATGTAAGAATATG
CATGTGTCACTGTTTGTGCATGTAGGGCTGGCTGCATGGATGATTAGCTA
GGGGAAGGGAAATACCGAACCCGGAGGGAGGATCGACGCGAAGGCGGAGG
GAAGGACGGAGAGGGAGCCTTCTGTTGTGGGCGTTGTACACCAGCCAACA
CCACCGACTCAAGGAGACCTTGTAAAGCGCACTCATGTACGACCATCGAA
AGGGTGTTCACAGTGATCCCGTCACAGCGGCCCTGGTCCCTTTCTCTGAT
AAGGAGGCAAAGGTTTGAAGAAAACGCGCCTGGCAAGGCCTTCATTGCCG
AGTTGGGGAATGGCGTTAAATTTAGTCCCAAAATGGACCATTTAGTCTGT
TATTTACCTGGAACTTTAGCCCTGGGCGTCTACCATGGCCTGGACCCCGA
GGGGACACAAGGACACATGGAGATGGCAAAAGAGTTGATGGTCACTTGTT
TTGAGTTCTACAACCATACAGCCACGGGACTTAGGGTGGATGCGTCCAAT
ACTGCCCGGCGGTCCTCGTCTGGGTCCTCAGATATGTATGTAAAACCAGC
AGACGCCCACAATATTCTGAGACCCGAGACGGTGGAAAGTTTATTTTACC
TTTACCGAGTGACGGAGGACAGGGTATACCAGGAGTGGGCGTGGCAGATC
TTTGTGGCGTTTGAGAAGCATGCCAAGATTGAGACGGGAGGTTACTCGGG
TTTGCGGAATGTCGAGGCGCTGGACTCGGCGCGGATTGATAAAATGGAGA
GCTTCTTTTTAGGGGAGACGTTGAAGTATTTTTATCTCTTGTTTGCGGAC
CCGGCACTGTTGTCGTTGGATGAGGTGGTGTTCAATACGGAGGCACATCC
CTTCCCGGTTTTAGCTCTGGAGGAGGATTGGTTGGTGTATAGAGGGAAGG
GAGAGCAACCTCCCGTTGCTGAAGGGAAGGAAAAGGAGGAGGATGTCGAG
GTCAAGGCGGAGGAGATGGAGGCTGAGAAAGGGAGCGCAAGGGAGGAGAA
CGTGAAAGAGGAAAGAGATGAGGAGGAAGGGATAGAAGAGATGGAAGAGG
GGTTTAGAAGAGAAGAGGAGGATGAAGTGTTGACGGCTGAAATCTAGAGT
GTGAGAGGAAGGGGGGCGAAGGCAAGTAGGGTGGGAGGGGAAGAACTTGG
GCTTGGTGTGATTCAAATGACTGATGAAATGAGAAGGAGACAGACGACTG
TGAAAGAGTATTGGACACTCTCAACCTAATGCGTTCAATTCATTTTATTA
TAAGTTAGCGAAGAACAGCCCAACAGCCCAACAGCCCATTTCAAACCTTG
TGTGCTGCCGGCTC
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Coding sequence (CDS) from alignment at scaffold_1:980364..981727-

>mRNA_1574 ID=mRNA_1574|Name=jgi.p|Nanoce1779_2|645801|organism=Nannochloropsis oceanica|type=CDS|length=765bp|location=Sequence derived from alignment at scaffold_1:980364..981727- (Nannochloropsis oceanica)
ATGGACCATTTAGTCTGTTATTTACCTGGAACTTTAGCCCTGGGCGTCTA
CCATGGCCTGGACCCCGAGGGGACACAAGGACACATGGAGATGGCAAAAG
AGTTGATGGTCACTTGTTTTGAGTTCTACAACCATACAGCCACGGGACTT
AGGGTGGATGCGTCCAATACTGCCCGGCGGTCCTCGTCTGGGTCCTCAGA
TATGTATGTAAAACCAGCAGACGCCCACAATATTCTGAGACCCGAGACGG
TGGAAAGTTTATTTTACCTTTACCGAGTGACGGAGGACAGGGTATACCAG
GAGTGGGCGTGGCAGATCTTTGTGGCGTTTGAGAAGCATGCCAAGATTGA
GACGGGAGGTTACTCGGGTTTGCGGAATGTCGAGGCGCTGGACTCGGCGC
GGATTGATAAAATGGAGAGCTTCTTTTTAGGGGAGACGTTGAAGTATTTT
TATCTCTTGTTTGCGGACCCGGCACTGTTGTCGTTGGATGAGGTGGTGTT
CAATACGGAGGCACATCCCTTCCCGGTTTTAGCTCTGGAGGAGGATTGGT
TGGTGTATAGAGGGAAGGGAGAGCAACCTCCCGTTGCTGAAGGGAAGGAA
AAGGAGGAGGATGTCGAGGTCAAGGCGGAGGAGATGGAGGCTGAGAAAGG
GAGCGCAAGGGAGGAGAACGTGAAAGAGGAAAGAGATGAGGAGGAAGGGA
TAGAAGAGATGGAAGAGGGGTTTAGAAGAGAAGAGGAGGATGAAGTGTTG
ACGGCTGAAATCTAG
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Synonyms
Publications