jgi.p|Nanoce1779_2|572736, mRNA_1573 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|572736
Unique NamemRNA_1573
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length836
Alignment locationscaffold_1:979269..980104 -

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Properties
Property NameValue
TranscriptId572822
TrackFilteredModels2
ProteinId572736
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:979269..980104 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572736gene_1573Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572736mRNA_1573-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1573CDS_1573Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1573 ID=mRNA_1573|Name=jgi.p|Nanoce1779_2|572736|organism=Nannochloropsis oceanica|type=mRNA|length=836bp
AGAGGCACACATGGACGACGACACGCCCACCGCGACGGTGTACGTCAACA
ATATCAACGAAAAGGTACGGGGTGAGAAGCTGATGCAAGGCCTGAAGCAA
GTTTTCACCCCCATTGGCAAGGTGAAAAAAATTCATGCCCGCAAGTCTCT
CAAGCTCCGGGGCCAGGCCTTCATCATCTACGATCGCGTTGTGGACGCGC
AATCAGCCGTGACCAAGCTGCAGGGCTTCTCCTTCTACGGCAAATCACTA
CGACTGGCATTTGCCGATTGCCCGTCCGACCTCACTCTCAAGGCACGAGG
AGAAGTGCCTGAGCGACGACCGGCCCACCCAAAGAAGGGCATGGTGGCGG
TCAAGCTGGAAAAGGTTGGGAGCAGTGGCGGTCGCGCCGTACCTAAAGCT
ACACCAGTCGCACAGCCTTTTGCTCCAGAAGCTGCATTTGGATCCCGGCC
GCCCCCGCCACCCATGCAACCTGGACACGTAAATGGAGCTGCTGCAGAAG
GACATATGTCCACTGCTGCCTTGCCCCCAGCCTTGCCGCACAACGTTTTA
TTTTGCGAAGAGTTGCCCTCAGAGGCGACAGAGGAGATGCTTGCGACGCT
ATTTGCTCAATACGCTGGATTTAAAGGGGTAAGGATGGTGAGGGCACGGG
CGTGCGCCTTTGTTGACTTTGGGAGTGAGCCGGAAGCGACCACGGCTTTG
CATGGCTTGGCCGGGTTCAAATTGACGGAGGAGAATCCATTGAAGGTCTC
GTATGCGAGACAATAAGATGGGTAGGAAAGAATTTGTGAAGTCATGTCAT
CGAGGAAAGAAAGAAAAGACATGAAGAGAGAATGCA
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protein sequence of jgi.p|Nanoce1779_2|572736

>mRNA_1573-protein ID=mRNA_1573-protein|Name=jgi.p|Nanoce1779_2|572736|organism=Nannochloropsis oceanica|type=polypeptide|length=252bp
MDDDTPTATVYVNNINEKVRGEKLMQGLKQVFTPIGKVKKIHARKSLKLR
GQAFIIYDRVVDAQSAVTKLQGFSFYGKSLRLAFADCPSDLTLKARGEVP
ERRPAHPKKGMVAVKLEKVGSSGGRAVPKATPVAQPFAPEAAFGSRPPPP
PMQPGHVNGAAAEGHMSTAALPPALPHNVLFCEELPSEATEEMLATLFAQ
YAGFKGVRMVRARACAFVDFGSEPEATTALHGLAGFKLTEENPLKVSYAR
Q*
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mRNA from alignment at scaffold_1:979269..980104-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1573 ID=mRNA_1573|Name=jgi.p|Nanoce1779_2|572736|organism=Nannochloropsis oceanica|type=mRNA|length=836bp|location=Sequence derived from alignment at scaffold_1:979269..980104- (Nannochloropsis oceanica)
AGAGGCACACATGGACGACGACACGCCCACCGCGACGGTGTACGTCAACA
ATATCAACGAAAAGGTACGGGGTGAGAAGCTGATGCAAGGCCTGAAGCAA
GTTTTCACCCCCATTGGCAAGGTGAAAAAAATTCATGCCCGCAAGTCTCT
CAAGCTCCGGGGCCAGGCCTTCATCATCTACGATCGCGTTGTGGACGCGC
AATCAGCCGTGACCAAGCTGCAGGGCTTCTCCTTCTACGGCAAATCACTA
CGACTGGCATTTGCCGATTGCCCGTCCGACCTCACTCTCAAGGCACGAGG
AGAAGTGCCTGAGCGACGACCGGCCCACCCAAAGAAGGGCATGGTGGCGG
TCAAGCTGGAAAAGGTTGGGAGCAGTGGCGGTCGCGCCGTACCTAAAGCT
ACACCAGTCGCACAGCCTTTTGCTCCAGAAGCTGCATTTGGATCCCGGCC
GCCCCCGCCACCCATGCAACCTGGACACGTAAATGGAGCTGCTGCAGAAG
GACATATGTCCACTGCTGCCTTGCCCCCAGCCTTGCCGCACAACGTTTTA
TTTTGCGAAGAGTTGCCCTCAGAGGCGACAGAGGAGATGCTTGCGACGCT
ATTTGCTCAATACGCTGGATTTAAAGGGGTAAGGATGGTGAGGGCACGGG
CGTGCGCCTTTGTTGACTTTGGGAGTGAGCCGGAAGCGACCACGGCTTTG
CATGGCTTGGCCGGGTTCAAATTGACGGAGGAGAATCCATTGAAGGTCTC
GTATGCGAGACAATAAGATGGGTAGGAAAGAATTTGTGAAGTCATGTCAT
CGAGGAAAGAAAGAAAAGACATGAAGAGAGAATGCA
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Coding sequence (CDS) from alignment at scaffold_1:979269..980104-

>mRNA_1573 ID=mRNA_1573|Name=jgi.p|Nanoce1779_2|572736|organism=Nannochloropsis oceanica|type=CDS|length=756bp|location=Sequence derived from alignment at scaffold_1:979269..980104- (Nannochloropsis oceanica)
ATGGACGACGACACGCCCACCGCGACGGTGTACGTCAACAATATCAACGA
AAAGGTACGGGGTGAGAAGCTGATGCAAGGCCTGAAGCAAGTTTTCACCC
CCATTGGCAAGGTGAAAAAAATTCATGCCCGCAAGTCTCTCAAGCTCCGG
GGCCAGGCCTTCATCATCTACGATCGCGTTGTGGACGCGCAATCAGCCGT
GACCAAGCTGCAGGGCTTCTCCTTCTACGGCAAATCACTACGACTGGCAT
TTGCCGATTGCCCGTCCGACCTCACTCTCAAGGCACGAGGAGAAGTGCCT
GAGCGACGACCGGCCCACCCAAAGAAGGGCATGGTGGCGGTCAAGCTGGA
AAAGGTTGGGAGCAGTGGCGGTCGCGCCGTACCTAAAGCTACACCAGTCG
CACAGCCTTTTGCTCCAGAAGCTGCATTTGGATCCCGGCCGCCCCCGCCA
CCCATGCAACCTGGACACGTAAATGGAGCTGCTGCAGAAGGACATATGTC
CACTGCTGCCTTGCCCCCAGCCTTGCCGCACAACGTTTTATTTTGCGAAG
AGTTGCCCTCAGAGGCGACAGAGGAGATGCTTGCGACGCTATTTGCTCAA
TACGCTGGATTTAAAGGGGTAAGGATGGTGAGGGCACGGGCGTGCGCCTT
TGTTGACTTTGGGAGTGAGCCGGAAGCGACCACGGCTTTGCATGGCTTGG
CCGGGTTCAAATTGACGGAGGAGAATCCATTGAAGGTCTCGTATGCGAGA
CAATAA
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Synonyms
Publications