jgi.p|Nanoce1779_2|572735, mRNA_1572 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|572735
Unique NamemRNA_1572
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1420
Alignment locationscaffold_1:977679..979248 +

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Properties
Property NameValue
TranscriptId572821
TrackFilteredModels2
ProteinId572735
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:977679..979248 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572735gene_1572Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572735mRNA_1572-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1572CDS_1572Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1572 ID=mRNA_1572|Name=jgi.p|Nanoce1779_2|572735|organism=Nannochloropsis oceanica|type=mRNA|length=1420bp
AGCCACAGCCCATCTCGCAAGTTGGCAGCAACCGAGGACACGACGATGCA
AGCTCCAACACACGGTCCTCAAGATCTAGTAGAACGCGCAGAGCATGCCC
TTGCCACCTTACAGCCGGAGTTGGCCGTCAAGTTCTACGAACGCGCTTTA
GAAGCCACGCCGGACGCCACTGCCGTGATGGACGCCTTGGCAGAGCTTTT
GATTGGTTTGGGAGAAAGCGAGCGGGCAAAAGGATTGCTGGAGAGGAGCG
CCAAGTTGGCTCCAGAGAGTGGGCCAAGCAAATGGTTGTATCTGGGACAG
ATGTCAACAGGCTGGCAGGCTCTGCAGCATTTCAGCAAGGGTGCGGAATT
GTTGAAAGCAGAACTGTCTGCACGAAGACGCGTCGGAATGGAGGCTGGAG
AATACGTCGACAACGAGACGTACGCGATCATGAATCAAGTGGTCAGCGCG
CAATGCTCGATCGCTGAGCTTTACTTGACGGATTTGTGTTTTGAGGATGA
TGCAGAGGGTCGATGTCAGGTGGCATTGGATGAAGCGATGCGGATGGATG
TGGGAGGCTCTCCGGAGGTAACTCAGGCATTGGCGAATTTACGATTGAGC
CAAGAAAATGGAGAGGAGGCGGCAGATTTAATGCTTGAGACGGTGCGGAG
ATTAAACGCATGCCAGCAAGAGGATTACGAGGAGGATATTGAGGACGAAG
GGGAGAAAGGGCGGGAGGGAGAAAGGGGCCTGCCCCTTCCCAATTTAATG
TTTAGGGTCCAAACGGCAAAATTGCTTTTGGAGTGCCAGACGTTTAAGAC
AGGCAAAAAATGCGCGAAGCGGGCGATTAAAATCTTGGAGGCATGTAAAT
GTGAGGATGATGAGAACATGGAGGTGTGGTATTTATTGGGGGTTGCTTAT
TTCACACAGAGAAGGCCGGATTTGGTAATGGCGAGGGCGCACCTAGAGTA
TGCACAGGGGGAGATGAGAAAACGGCAGCAGCTGAATGGTGGAGCAGGAA
AGAATGAAGCGGATTCTGACTATGGTGACCACTTGAGACTGGTGGAGGAG
CAGTTGGCGATGGTTGTGGATGCGGAGGAGAAAGGGATTAAGAAGTGCGA
AGAGGATGGGGCGGCGATGGAGGACGATGGCGATGGTCATGAGGAGAGGG
GGGTTATAAGTAATAGTAGCAGCAGCAGCAGCAGTGAGGACAGCTGTAGT
GGCTCTGATGCGGACGAAGGGGGGGGGGCAATGGAAAATTGATGAGAGGG
GTACTGAAGAAATTTATACACAAAATCAGATAGAAGCAGGAGTAAGGCCC
TGGACAGAAAGGCCCCATGGCTATCCCGCATCACAGTGACTATGCCACGC
GATTAACTTACTCCCTTTCCTCAAAAAGGAAGCATGGAACCAATAGTCAA
GACTCCCACCACAATTTTGA
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protein sequence of jgi.p|Nanoce1779_2|572735

>mRNA_1572-protein ID=mRNA_1572-protein|Name=jgi.p|Nanoce1779_2|572735|organism=Nannochloropsis oceanica|type=polypeptide|length=399bp
MQAPTHGPQDLVERAEHALATLQPELAVKFYERALEATPDATAVMDALAE
LLIGLGESERAKGLLERSAKLAPESGPSKWLYLGQMSTGWQALQHFSKGA
ELLKAELSARRRVGMEAGEYVDNETYAIMNQVVSAQCSIAELYLTDLCFE
DDAEGRCQVALDEAMRMDVGGSPEVTQALANLRLSQENGEEAADLMLETV
RRLNACQQEDYEEDIEDEGEKGREGERGLPLPNLMFRVQTAKLLLECQTF
KTGKKCAKRAIKILEACKCEDDENMEVWYLLGVAYFTQRRPDLVMARAHL
EYAQGEMRKRQQLNGGAGKNEADSDYGDHLRLVEEQLAMVVDAEEKGIKK
CEEDGAAMEDDGDGHEERGVISNSSSSSSSEDSCSGSDADEGGGAMEN*
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mRNA from alignment at scaffold_1:977679..979248+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1572 ID=mRNA_1572|Name=jgi.p|Nanoce1779_2|572735|organism=Nannochloropsis oceanica|type=mRNA|length=1570bp|location=Sequence derived from alignment at scaffold_1:977679..979248+ (Nannochloropsis oceanica)
AGCCACAGCCCATCTCGCAAGTTGGCAGCAACCGAGGACACGACGATGCA
AGCTCCAACACACGGTCCTCAAGATCTAGTAGAACGCGCAGAGCATGCCC
TTGCCACCTTACAGCCGGAGTTGGCCGTCAAGTACGTCAAAACCGATGCC
TGGAAATAAAAATAAAAATATTTATATATTGCATATATATGTATATATAT
TGCCCAGCGCTGCCCCATCCACTAATGCGATGTTGGGCTCACTATTGCTT
CCCTTCCCACTCATGACCGATGGCCGACCAGGTTCTACGAACGCGCTTTA
GAAGCCACGCCGGACGCCACTGCCGTGATGGACGCCTTGGCAGAGCTTTT
GATTGGTTTGGGAGAAAGCGAGCGGGCAAAAGGATTGCTGGAGAGGAGCG
CCAAGTTGGCTCCAGAGAGTGGGCCAAGCAAATGGTTGTATCTGGGACAG
ATGTCAACAGGCTGGCAGGCTCTGCAGCATTTCAGCAAGGGTGCGGAATT
GTTGAAAGCAGAACTGTCTGCACGAAGACGCGTCGGAATGGAGGCTGGAG
AATACGTCGACAACGAGACGTACGCGATCATGAATCAAGTGGTCAGCGCG
CAATGCTCGATCGCTGAGCTTTACTTGACGGATTTGTGTTTTGAGGATGA
TGCAGAGGGTCGATGTCAGGTGGCATTGGATGAAGCGATGCGGATGGATG
TGGGAGGCTCTCCGGAGGTAACTCAGGCATTGGCGAATTTACGATTGAGC
CAAGAAAATGGAGAGGAGGCGGCAGATTTAATGCTTGAGACGGTGCGGAG
ATTAAACGCATGCCAGCAAGAGGATTACGAGGAGGATATTGAGGACGAAG
GGGAGAAAGGGCGGGAGGGAGAAAGGGGCCTGCCCCTTCCCAATTTAATG
TTTAGGGTCCAAACGGCAAAATTGCTTTTGGAGTGCCAGACGTTTAAGAC
AGGCAAAAAATGCGCGAAGCGGGCGATTAAAATCTTGGAGGCATGTAAAT
GTGAGGATGATGAGAACATGGAGGTGTGGTATTTATTGGGGGTTGCTTAT
TTCACACAGAGAAGGCCGGATTTGGTAATGGCGAGGGCGCACCTAGAGTA
TGCACAGGGGGAGATGAGAAAACGGCAGCAGCTGAATGGTGGAGCAGGAA
AGAATGAAGCGGATTCTGACTATGGTGACCACTTGAGACTGGTGGAGGAG
CAGTTGGCGATGGTTGTGGATGCGGAGGAGAAAGGGATTAAGAAGTGCGA
AGAGGATGGGGCGGCGATGGAGGACGATGGCGATGGTCATGAGGAGAGGG
GGGTTATAAGTAATAGTAGCAGCAGCAGCAGCAGTGAGGACAGCTGTAGT
GGCTCTGATGCGGACGAAGGGGGGGGGGCAATGGAAAATTGATGAGAGGG
GTACTGAAGAAATTTATACACAAAATCAGATAGAAGCAGGAGTAAGGCCC
TGGACAGAAAGGCCCCATGGCTATCCCGCATCACAGTGACTATGCCACGC
GATTAACTTACTCCCTTTCCTCAAAAAGGAAGCATGGAACCAATAGTCAA
GACTCCCACCACAATTTTGA
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Coding sequence (CDS) from alignment at scaffold_1:977679..979248+

>mRNA_1572 ID=mRNA_1572|Name=jgi.p|Nanoce1779_2|572735|organism=Nannochloropsis oceanica|type=CDS|length=2394bp|location=Sequence derived from alignment at scaffold_1:977679..979248+ (Nannochloropsis oceanica)
ATGCAAGCTCCAACACACGGTCCTCAAGATCTAGTAGAACGCGCAGAGCA
TGCCCTTGCCACCTTACAGCCGGAGTTGGCCGTCAAGTTCTACGAACGCG
CTTTAGAAGCCACGCCGGACGCCACTGCCGTGATGGACGCCTTGGCAGAG
CTTTTGATTGGTTTGGGAGAAAGCGAGCGGGCAAAAGGATTGCTGGAGAG
GAGCGCCAAGTTGGCTCCAGAGAGTGGGCCAAGCAAATGGTTGTATCTGG
GACAGATGTCAACAGGCTGGCAGGCTCTGCAGCATTTCAGCAAGGGTGCG
GAATTGTTGAAAGCAGAACTGTCTGCACGAAGACGCGTCGGAATGGAGGC
TGGAGAATACGTCGACAACGAGACGTACGCGATCATGAATCAAGTGGTCA
GCGCGCAATGCTCGATCGCTGAGCTTTACTTGACGGATTTGTGTTTTGAG
GATGATGCAGAGGGTCGATGTCAGGTGGCATTGGATGAAGCGATGCGGAT
GGATGTGGGAGGCTCTCCGGAGGTAACTCAGGCATTGGCGAATTTACGAT
TGAGCCAAGAAAATGGAGAGGAGGCGGCAGATTTAATGCTTGAGACGGTG
CGGAGATTAAACGCATGCCAGCAAGAGGATTACGAGGAGGATATTGAGGA
CGAAGGGGAGAAAGGGCGGGAGGGAGAAAGGGGCCTGCCCCTTCCCAATT
TAATGTTTAGGGTCCAAACGGCAAAATTGCTTTTGGAGTGCCAGACGTTT
AAGACAGGCAAAAAATGCGCGAAGCGGGCGATTAAAATCTTGGAGGCATG
TAAATGTGAGGATGATGAGAACATGGAGGTGTGGTATTTATTGGGGGTTG
CTTATTTCACACAGAGAAGGCCGGATTTGGTAATGGCGAGGGCGCACCTA
GAGTATGCACAGGGGGAGATGAGAAAACGGCAGCAGCTGAATGGTGGAGC
AGGAAAGAATGAAGCGGATTCTGACTATGGTGACCACTTGAGACTGGTGG
AGGAGCAGTTGGCGATGGTTGTGGATGCGGAGGAGAAAGGGATTAAGAAG
TGCGAAGAGGATGGGGCGGCGATGGAGGACGATGGCGATGGTCATGAGGA
GAGGGGGGTTATAAGTAATAGTAGCAGCAGCAGCAGCAGTGAGGACAGCT
GTAGTGGCTCTGATGCGGACGAAGGGGGGGGGGCAATGGAAAATTGAATG
CAAGCTCCAACACACGGTCCTCAAGATCTAGTAGAACGCGCAGAGCATGC
CCTTGCCACCTTACAGCCGGAGTTGGCCGTCAAGTTCTACGAACGCGCTT
TAGAAGCCACGCCGGACGCCACTGCCGTGATGGACGCCTTGGCAGAGCTT
TTGATTGGTTTGGGAGAAAGCGAGCGGGCAAAAGGATTGCTGGAGAGGAG
CGCCAAGTTGGCTCCAGAGAGTGGGCCAAGCAAATGGTTGTATCTGGGAC
AGATGTCAACAGGCTGGCAGGCTCTGCAGCATTTCAGCAAGGGTGCGGAA
TTGTTGAAAGCAGAACTGTCTGCACGAAGACGCGTCGGAATGGAGGCTGG
AGAATACGTCGACAACGAGACGTACGCGATCATGAATCAAGTGGTCAGCG
CGCAATGCTCGATCGCTGAGCTTTACTTGACGGATTTGTGTTTTGAGGAT
GATGCAGAGGGTCGATGTCAGGTGGCATTGGATGAAGCGATGCGGATGGA
TGTGGGAGGCTCTCCGGAGGTAACTCAGGCATTGGCGAATTTACGATTGA
GCCAAGAAAATGGAGAGGAGGCGGCAGATTTAATGCTTGAGACGGTGCGG
AGATTAAACGCATGCCAGCAAGAGGATTACGAGGAGGATATTGAGGACGA
AGGGGAGAAAGGGCGGGAGGGAGAAAGGGGCCTGCCCCTTCCCAATTTAA
TGTTTAGGGTCCAAACGGCAAAATTGCTTTTGGAGTGCCAGACGTTTAAG
ACAGGCAAAAAATGCGCGAAGCGGGCGATTAAAATCTTGGAGGCATGTAA
ATGTGAGGATGATGAGAACATGGAGGTGTGGTATTTATTGGGGGTTGCTT
ATTTCACACAGAGAAGGCCGGATTTGGTAATGGCGAGGGCGCACCTAGAG
TATGCACAGGGGGAGATGAGAAAACGGCAGCAGCTGAATGGTGGAGCAGG
AAAGAATGAAGCGGATTCTGACTATGGTGACCACTTGAGACTGGTGGAGG
AGCAGTTGGCGATGGTTGTGGATGCGGAGGAGAAAGGGATTAAGAAGTGC
GAAGAGGATGGGGCGGCGATGGAGGACGATGGCGATGGTCATGAGGAGAG
GGGGGTTATAAGTAATAGTAGCAGCAGCAGCAGCAGTGAGGACAGCTGTA
GTGGCTCTGATGCGGACGAAGGGGGGGGGGCAATGGAAAATTGA
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Synonyms
Publications