jgi.p|Nanoce1779_2|572730, mRNA_1571 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|572730
Unique Name	mRNA_1571
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1242
Alignment location	scaffold_1:975696..977506 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	572816
Track	FilteredModels2
ProteinId	572730

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_1	supercontig	scaffold_1:975696..977506 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|572730	gene_1571	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|572730	mRNA_1571-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1571	CDS_1571	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_1:975696..977506+
coding sequence from alignment at scaffold_1:975696..977506+

mRNA sequence

>mRNA_1571 ID=mRNA_1571|Name=jgi.p|Nanoce1779_2|572730|organism=Nannochloropsis oceanica|type=mRNA|length=1242bp
CAGGATTATCACAGGCATCCAGGCGCTGCGCACGACTCTCCTCTCTGGTG
CAGCACCCAAGATTTCCTGCGGGCCTTGCTCCTCCTCCTCAACTACGACG
ACACAGGCGATGGCTTGCGTAAGAAGAAGGCTCCACGGCCCGCCCATGCC
CATGGTGATGATGGGAGTGCAGTTGCTGATCTTGGCGCTTGGCTCCGTCC
CCTCGTTAGTCAATGCAGGTTTTGGCCTGGGAGACTACCGCATCGACGTT
GACTTTTTTGGCGGCGAGGGAGACCTCAGCCCTGCGCAGTACAAGGCTTA
TCTTCAAGGAAAAATGCCCGCCACTCCCCGAGGCCGCAAGTATCAATCCC
CCCTTTGGTACCTGTACTCCCCGGGCTTGCCCAAAATTGAACGTGAAGCA
CAGCTCGCGGAGTTGCGATACGTGGAGCAGCAGCTCGGAGTGAAGTTTTG
GAAGGTCAAGGTAGACAACGAGAAAAAAGAGAGATTTTTGAAGAGCCTGG
CGGAAGCCAGTGAGGCCCCTGGGGATAACAAGATTCCACGACGGTTTAGG
GAGGAGGCAGCCCGCAGCCCTGGGACGCCTTTCTTTTATAACCTCAACAC
GGGCAAGAGCATCCAAGGCATGACCTCGTGCACCAACCTCAAGAAATGGG
CGTTGGGGAAAGAGTATAGAGACGACCCATGGCAAGGTTTCACCTCTCCG
CAGTTTCAAGAATTGATGTCCAAGACAGGCGATGATGGCGAAAAAGATTA
CATGGATAAGTACAGCGACCACTCTTGGATTCTTCGCTATCGAAAAGAGC
GCGACAATGCCCTGGCCGCACATAAGAAGCAGTACAATCGTCGAATATTT
TGGTCGAGATTTGGCCTTGCCAAAGCTCCGCAAGGCGATGCATTTGAACG
CTTCATTGAAATCGACCGGCAAAAAGAGGCCGAGCAGGAGGTAAAGAAAG
GATGGGTGAAGCCTTTACGCTCCCGCTCAGCCCCCGTGTCGGTAGGCTCG
ACGAAAAGTATTTTGGGGAGGAGCGAGAAAAAGAAGAAGAAGGAGGAGGA
TAGTAAGAGGGGTCGCGTAGAGAGGCGGTGAGGGAGGATATTGGAAGGCG
AGACACTGCCTGAGAGTGTGTGTGGCACACTAGCCATTAAGAGATAAATC
GTGTAAAAATCAAAAACACACGAAACATTTTCAATAAAAGAAAAAGAAGT
AAGTCAGCAGCAACCAGACAAAGCAGTGAAAATCAACCTCCC

protein sequence of jgi.p|Nanoce1779_2|572730

>mRNA_1571-protein ID=mRNA_1571-protein|Name=jgi.p|Nanoce1779_2|572730|organism=Nannochloropsis oceanica|type=polypeptide|length=324bp
MACVRRRLHGPPMPMVMMGVQLLILALGSVPSLVNAGFGLGDYRIDVDFF
GGEGDLSPAQYKAYLQGKMPATPRGRKYQSPLWYLYSPGLPKIEREAQLA
ELRYVEQQLGVKFWKVKVDNEKKERFLKSLAEASEAPGDNKIPRRFREEA
ARSPGTPFFYNLNTGKSIQGMTSCTNLKKWALGKEYRDDPWQGFTSPQFQ
ELMSKTGDDGEKDYMDKYSDHSWILRYRKERDNALAAHKKQYNRRIFWSR
FGLAKAPQGDAFERFIEIDRQKEAEQEVKKGWVKPLRSRSAPVSVGSTKS
ILGRSEKKKKKEEDSKRGRVERR*

mRNA from alignment at scaffold_1:975696..977506+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1571 ID=mRNA_1571|Name=jgi.p|Nanoce1779_2|572730|organism=Nannochloropsis oceanica|type=mRNA|length=1811bp|location=Sequence derived from alignment at scaffold_1:975696..977506+ (Nannochloropsis oceanica)
CAGGATTATCACAGGCATCCAGGCGCTGCGCACGACTCTCCTCTCTGGTG
CAGCACCCAAGATTTCCTGCGGGCCTTGCTCCTCCTCCTCAACTACGACG
ACACAGGCGATGGCTTGCGTAAGAAGAAGGCTCCACGGCCCGCCCATGCC
CATGGTGATGATGGGAGTGCAGTTGCTGATCTTGGCGCTTGGCTCCGTCC
CCTCGTTAGTCAATGCAGGTTTTGGCCTGGGAGACTACCGCATCGACGTT
GACTTTTTTGGCGGCGAGGGAGACCTCAGCCCTGCGCAGTACGTACACAG
GGATAATAATGTGGATGGGTGTGTTCGGTGGGGTATATGCGTAGATCTGC
TTATGTGGATGATTGAAAAGGGGAGGCAGTGCGGCATGTGCGCTCTCTCC
GCCTTGCTTCTCCCCACTATCGCGTCCCTCCTCCAGAGACAAACACTCTT
ACTCTCGTCTCCCCTCTCCCTTCATTCCAGGTACAAGGCTTATCTTCAAG
GAAAAATGCCCGCCACTCCCCGAGGCCGCAAGTATCAATCCCCCCTTTGG
TACCTGTACTCCCCGGGCTTGCCCAAAATTGAACGTGAAGCACAGCTCGC
GGAGTTGCGATACGTGGAGCAGCAGCTCGGAGTGAAGTTTTGGAAGGTCA
AGGTAGACAACGAGAAAAAAGAGAGATTTTTGAAGAGCCTGGCGGAAGCC
AGTGAGGCCCCTGGGGATAACAAGATTCCACGACGGTTTAGGGAGGAGGC
AGCCCGCAGCCCTGGGACGCCTTTCTTTTATAACCTGTACGTACAGGGGA
TATTTGTGCACGTGCGTGCATGTGCATGTGTGTTTTTATAATATGTTTTG
TGATACCCTTGTTTAGAGCGTGCTTTGGTGCTATCTTCTTGCCGAATACA
GTTCCTGTTTCACTCCTTCTCTTCCTCCACTCTCCCACAGCAACACGGGC
AAGAGCATCCAAGGCATGACCTCGTGCACCAACCTCAAGAAATGGGCGTT
GGGGAAAGAGTATAGAGACGACCCATGGCAAGGTTTCACCTCTCCGCAGT
TTCAAGAATTGATGTCCAAGACAGGCGATGATGGCGAAAAAGATTGTAAG
TCAGCCTTCCCCCCTCCCCCCCCCCCCTCTTCTACCTCTCCTAATTTCCC
AAATAATATCTAGACGATACAAGCAAGAGCATGAAATAAATTTGGCTCGT
GCCATTCTTTGCTTCATCTGTTTTTCTCATCTGCTATTACCCCAGAAGGT
ATACACATGCCTCAATAACGACACTGATTATCCCTCCATCCCGCGCTCCC
TCATTATCTCTTCACCAGACATGGATAAGTACAGCGACCACTCTTGGATT
CTTCGCTATCGAAAAGAGCGCGACAATGCCCTGGCCGCACATAAGAAGCA
GTACAATCGTCGAATATTTTGGTCGAGATTTGGCCTTGCCAAAGCTCCGC
AAGGCGATGCATTTGAACGCTTCATTGAAATCGACCGGCAAAAAGAGGCC
GAGCAGGAGGTAAAGAAAGGATGGGTGAAGCCTTTACGCTCCCGCTCAGC
CCCCGTGTCGGTAGGCTCGACGAAAAGTATTTTGGGGAGGAGCGAGAAAA
AGAAGAAGAAGGAGGAGGATAGTAAGAGGGGTCGCGTAGAGAGGCGGTGA
GGGAGGATATTGGAAGGCGAGACACTGCCTGAGAGTGTGTGTGGCACACT
AGCCATTAAGAGATAAATCGTGTAAAAATCAAAAACACACGAAACATTTT
CAATAAAAGAAAAAGAAGTAAGTCAGCAGCAACCAGACAAAGCAGTGAAA
ATCAACCTCCC

Coding sequence (CDS) from alignment at scaffold_1:975696..977506+

>mRNA_1571 ID=mRNA_1571|Name=jgi.p|Nanoce1779_2|572730|organism=Nannochloropsis oceanica|type=CDS|length=3888bp|location=Sequence derived from alignment at scaffold_1:975696..977506+ (Nannochloropsis oceanica)
ATGGCTTGCGTAAGAAGAAGGCTCCACGGCCCGCCCATGCCCATGGTGAT
GATGGGAGTGCAGTTGCTGATCTTGGCGCTTGGCTCCGTCCCCTCGTTAG
TCAATGCAGGTTTTGGCCTGGGAGACTACCGCATCGACGTTGACTTTTTT
GGCGGCGAGGGAGACCTCAGCCCTGCGCAGTACAAGGCTTATCTTCAAGG
AAAAATGCCCGCCACTCCCCGAGGCCGCAAGTATCAATCCCCCCTTTGGT
ACCTGTACTCCCCGGGCTTGCCCAAAATTGAACGTGAAGCACAGCTCGCG
GAGTTGCGATACGTGGAGCAGCAGCTCGGAGTGAAGTTTTGGAAGGTCAA
GGTAGACAACGAGAAAAAAGAGAGATTTTTGAAGAGCCTGGCGGAAGCCA
GTGAGGCCCCTGGGGATAACAAGATTCCACGACGGTTTAGGGAGGAGGCA
GCCCGCAGCCCTGGGACGCCTTTCTTTTATAACCTCAACACGGGCAAGAG
CATCCAAGGCATGACCTCGTGCACCAACCTCAAGAAATGGGCGTTGGGGA
AAGAGTATAGAGACGACCCATGGCAAGGTTTCACCTCTCCGCAGTTTCAA
GAATTGATGTCCAAGACAGGCGATGATGGCGAAAAAGATTACATGGATAA
GTACAGCGACCACTCTTGGATTCTTCGCTATCGAAAAGAGCGCGACAATG
CCCTGGCCGCACATAAGAAGCAGTACAATCGTCGAATATTTTGGTCGAGA
TTTGGCCTTGCCAAAGCTCCGCAAGGCGATGCATTTGAACGCTTCATTGA
AATCGACCGGCAAAAAGAGGCCGAGCAGGAGGTAAAGAAAGGATGGGTGA
AGCCTTTACGCTCCCGCTCAGCCCCCGTGTCGGTAGGCTCGACGAAAAGT
ATTTTGGGGAGGAGCGAGAAAAAGAAGAAGAAGGAGGAGGATAGTAAGAG
GGGTCGCGTAGAGAGGCGGTGAATGGCTTGCGTAAGAAGAAGGCTCCACG
GCCCGCCCATGCCCATGGTGATGATGGGAGTGCAGTTGCTGATCTTGGCG
CTTGGCTCCGTCCCCTCGTTAGTCAATGCAGGTTTTGGCCTGGGAGACTA
CCGCATCGACGTTGACTTTTTTGGCGGCGAGGGAGACCTCAGCCCTGCGC
AGTACAAGGCTTATCTTCAAGGAAAAATGCCCGCCACTCCCCGAGGCCGC
AAGTATCAATCCCCCCTTTGGTACCTGTACTCCCCGGGCTTGCCCAAAAT
TGAACGTGAAGCACAGCTCGCGGAGTTGCGATACGTGGAGCAGCAGCTCG
GAGTGAAGTTTTGGAAGGTCAAGGTAGACAACGAGAAAAAAGAGAGATTT
TTGAAGAGCCTGGCGGAAGCCAGTGAGGCCCCTGGGGATAACAAGATTCC
ACGACGGTTTAGGGAGGAGGCAGCCCGCAGCCCTGGGACGCCTTTCTTTT
ATAACCTCAACACGGGCAAGAGCATCCAAGGCATGACCTCGTGCACCAAC
CTCAAGAAATGGGCGTTGGGGAAAGAGTATAGAGACGACCCATGGCAAGG
TTTCACCTCTCCGCAGTTTCAAGAATTGATGTCCAAGACAGGCGATGATG
GCGAAAAAGATTACATGGATAAGTACAGCGACCACTCTTGGATTCTTCGC
TATCGAAAAGAGCGCGACAATGCCCTGGCCGCACATAAGAAGCAGTACAA
TCGTCGAATATTTTGGTCGAGATTTGGCCTTGCCAAAGCTCCGCAAGGCG
ATGCATTTGAACGCTTCATTGAAATCGACCGGCAAAAAGAGGCCGAGCAG
GAGGTAAAGAAAGGATGGGTGAAGCCTTTACGCTCCCGCTCAGCCCCCGT
GTCGGTAGGCTCGACGAAAAGTATTTTGGGGAGGAGCGAGAAAAAGAAGA
AGAAGGAGGAGGATAGTAAGAGGGGTCGCGTAGAGAGGCGGTGAATGGCT
TGCGTAAGAAGAAGGCTCCACGGCCCGCCCATGCCCATGGTGATGATGGG
AGTGCAGTTGCTGATCTTGGCGCTTGGCTCCGTCCCCTCGTTAGTCAATG
CAGGTTTTGGCCTGGGAGACTACCGCATCGACGTTGACTTTTTTGGCGGC
GAGGGAGACCTCAGCCCTGCGCAGTACAAGGCTTATCTTCAAGGAAAAAT
GCCCGCCACTCCCCGAGGCCGCAAGTATCAATCCCCCCTTTGGTACCTGT
ACTCCCCGGGCTTGCCCAAAATTGAACGTGAAGCACAGCTCGCGGAGTTG
CGATACGTGGAGCAGCAGCTCGGAGTGAAGTTTTGGAAGGTCAAGGTAGA
CAACGAGAAAAAAGAGAGATTTTTGAAGAGCCTGGCGGAAGCCAGTGAGG
CCCCTGGGGATAACAAGATTCCACGACGGTTTAGGGAGGAGGCAGCCCGC
AGCCCTGGGACGCCTTTCTTTTATAACCTCAACACGGGCAAGAGCATCCA
AGGCATGACCTCGTGCACCAACCTCAAGAAATGGGCGTTGGGGAAAGAGT
ATAGAGACGACCCATGGCAAGGTTTCACCTCTCCGCAGTTTCAAGAATTG
ATGTCCAAGACAGGCGATGATGGCGAAAAAGATTACATGGATAAGTACAG
CGACCACTCTTGGATTCTTCGCTATCGAAAAGAGCGCGACAATGCCCTGG
CCGCACATAAGAAGCAGTACAATCGTCGAATATTTTGGTCGAGATTTGGC
CTTGCCAAAGCTCCGCAAGGCGATGCATTTGAACGCTTCATTGAAATCGA
CCGGCAAAAAGAGGCCGAGCAGGAGGTAAAGAAAGGATGGGTGAAGCCTT
TACGCTCCCGCTCAGCCCCCGTGTCGGTAGGCTCGACGAAAAGTATTTTG
GGGAGGAGCGAGAAAAAGAAGAAGAAGGAGGAGGATAGTAAGAGGGGTCG
CGTAGAGAGGCGGTGAATGGCTTGCGTAAGAAGAAGGCTCCACGGCCCGC
CCATGCCCATGGTGATGATGGGAGTGCAGTTGCTGATCTTGGCGCTTGGC
TCCGTCCCCTCGTTAGTCAATGCAGGTTTTGGCCTGGGAGACTACCGCAT
CGACGTTGACTTTTTTGGCGGCGAGGGAGACCTCAGCCCTGCGCAGTACA
AGGCTTATCTTCAAGGAAAAATGCCCGCCACTCCCCGAGGCCGCAAGTAT
CAATCCCCCCTTTGGTACCTGTACTCCCCGGGCTTGCCCAAAATTGAACG
TGAAGCACAGCTCGCGGAGTTGCGATACGTGGAGCAGCAGCTCGGAGTGA
AGTTTTGGAAGGTCAAGGTAGACAACGAGAAAAAAGAGAGATTTTTGAAG
AGCCTGGCGGAAGCCAGTGAGGCCCCTGGGGATAACAAGATTCCACGACG
GTTTAGGGAGGAGGCAGCCCGCAGCCCTGGGACGCCTTTCTTTTATAACC
TCAACACGGGCAAGAGCATCCAAGGCATGACCTCGTGCACCAACCTCAAG
AAATGGGCGTTGGGGAAAGAGTATAGAGACGACCCATGGCAAGGTTTCAC
CTCTCCGCAGTTTCAAGAATTGATGTCCAAGACAGGCGATGATGGCGAAA
AAGATTACATGGATAAGTACAGCGACCACTCTTGGATTCTTCGCTATCGA
AAAGAGCGCGACAATGCCCTGGCCGCACATAAGAAGCAGTACAATCGTCG
AATATTTTGGTCGAGATTTGGCCTTGCCAAAGCTCCGCAAGGCGATGCAT
TTGAACGCTTCATTGAAATCGACCGGCAAAAAGAGGCCGAGCAGGAGGTA
AAGAAAGGATGGGTGAAGCCTTTACGCTCCCGCTCAGCCCCCGTGTCGGT
AGGCTCGACGAAAAGTATTTTGGGGAGGAGCGAGAAAAAGAAGAAGAAGG
AGGAGGATAGTAAGAGGGGTCGCGTAGAGAGGCGGTGA

Synonyms

Publications