jgi.p|Nanoce1779_2|572725, mRNA_1570 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|572725
Unique NamemRNA_1570
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1051
Alignment locationscaffold_1:973739..975068 -

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Properties
Property NameValue
TranscriptId572811
TrackFilteredModels2
ProteinId572725
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:973739..975068 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572725gene_1570Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572725mRNA_1570-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1570CDS_1570Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1570 ID=mRNA_1570|Name=jgi.p|Nanoce1779_2|572725|organism=Nannochloropsis oceanica|type=mRNA|length=1051bp
ACAGGGCAGTTGCTGTAGCAGCAGCAGTAGCAGCCGCCGCGGCATTACTA
GCAACATGGCGGATGAGATTGACGCCGCCCGCGCTCGCATGATTGCCAAG
CGCTTTGGAGGCGCGGAGAACGTGAGAACAGGAGGGAAGGGCACGGTCCG
GCGGAAGCGCAAGGCACAGCACAAGAACTCTTCGACGGCGGATGACAAAA
AGCTTGGTGCCACATTGAAGAAGCTGGGCGTGACTAACATCCCGGGCATT
GAGGAGGCGAATATGTTCAAGAACAATGGCGAAGTCATCCACTTCAGGAA
TCCTAAGGTGCAAGCGTCCATCCAAGCCAAAACGTACGTGATCAGCGGTC
CGGCTGAGACGAAGACGATCCAAGAATTATTGCCCGGCATCATTCAGCAG
CTGGGTGGGGATAACATCCAAGCGTTGAGCAAGCAATTCAGCGAGCAGTA
CGGGCAGGGGGGTGGGATCGACCCGGCCCTGGTTGAGGAGGGGGAAGAGG
AAGAGGATGATGACGATGCCGTGCCTGATTTGGTGGAGAATTTCGAGGCC
GTGTCCACCTAGATCTATCAGCACCAGGAACTGTTCCAACAATGGACAGC
GACTAGGAGATGAAGATAAACAGCTGCTCCATTCCCTTTTCCTGATCTGC
GTCCAAATTAGTTCTTTGTCAGGGTTGGGGAGGAGGAGAGGGTAAACATG
CAGAGGATGGATAGGGGAGGTGACTCCCATGCATCGTTTGTTTGTTCTCT
CTTCTGTTTGAAGGGATTAAAGAGACTCTCTGTAGAGAATTAAGAAAGTC
TTTTTAATCCTGTCTCTCCTCTCAAACAATAATAAATCACATTTTTAAAA
GGAGAAGGCAGGTGGGAGAGATGGAGGGGAGGAGGGGAGGGTGAAGGGAG
GGAGGGCATTCGTCATCCATAGGTTGTCCAGAAAGAGGATGATGTGAAAC
AGGTAAAAGAAAATTAGGTATGGAGAGATAAGCTGGTAACGATGAGACCA
GAAGCAACAGGAAACAAAAAGAAAGAAGACAACAACCGACAAGAAACAAA
A
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protein sequence of jgi.p|Nanoce1779_2|572725

>mRNA_1570-protein ID=mRNA_1570-protein|Name=jgi.p|Nanoce1779_2|572725|organism=Nannochloropsis oceanica|type=polypeptide|length=169bp
MADEIDAARARMIAKRFGGAENVRTGGKGTVRRKRKAQHKNSSTADDKKL
GATLKKLGVTNIPGIEEANMFKNNGEVIHFRNPKVQASIQAKTYVISGPA
ETKTIQELLPGIIQQLGGDNIQALSKQFSEQYGQGGGIDPALVEEGEEEE
DDDDAVPDLVENFEAVST*
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mRNA from alignment at scaffold_1:973739..975068-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1570 ID=mRNA_1570|Name=jgi.p|Nanoce1779_2|572725|organism=Nannochloropsis oceanica|type=mRNA|length=1330bp|location=Sequence derived from alignment at scaffold_1:973739..975068- (Nannochloropsis oceanica)
ACAGGGCAGTTGCTGTAGCAGCAGCAGTAGCAGCCGCCGCGGCATTACTA
GCAACATGGCGGATGAGATTGACGCCGCCCGCGCTCGCATGATTGCCAAG
CGCTTTGGAGGCGCGGAGAACGTGAGAACAGGAGGGAAGGGCACGGTCCG
GCGGAAGCGCAAGGCACAGCACAAGAACTCTTCGACGGCGGATGACAAAA
AGCTTGGTGCCACATTGAAGAAGCTGGGCGTGACTAACATCCCGGGCATT
GAGGAGGCGAATATGTTCAAGAACAATGGCGAAGTCATCCACTTCAGGAA
TCCTAAGGGTGAGTTGGTTGAGGCACAGAAGTGAAGAACAGACGGAAGGG
AAGGCATGCGCATGCCCATCAGAAGGAGTTTTTGTGTATGGTAGTATTGG
AGAAAGAACTGTAGAAATTGAAAACGCGCGGTGACGCGTTCTTTCCCCTT
CCTCCTCTCCCACCCAGTGCAAGCGTCCATCCAAGCCAAAACGTACGTGA
TCAGCGGTCCGGCTGAGACGAAGACGATCCAAGAATTATTGCCCGGCATC
ATTCAGCAGCTGGGTGGGGATAACATCCAAGCGTTGAGCAAGCAATTCAG
CGAGCAGTACGGGCAGGGGGGTGGGATCGACCCGGCCCTGGTTGAGGAGG
GGGAAGAGGAAGAGGATGATGACGATGCCGTGCCTGATTTGGTGGAGAAT
TTCGAGGTAGGCTTTGGAGGAAGGCTATAATATTACAATCATTAGTGTTG
CTTCAAAGAAAAGAGGGTTGATGATTTCATGCTTATCATTTCTTCTTTAC
CGAACCAACATGAAATGCACTCCCAGGCCGTGTCCACCTAGATCTATCAG
CACCAGGAACTGTTCCAACAATGGACAGCGACTAGGAGATGAAGATAAAC
AGCTGCTCCATTCCCTTTTCCTGATCTGCGTCCAAATTAGTTCTTTGTCA
GGGTTGGGGAGGAGGAGAGGGTAAACATGCAGAGGATGGATAGGGGAGGT
GACTCCCATGCATCGTTTGTTTGTTCTCTCTTCTGTTTGAAGGGATTAAA
GAGACTCTCTGTAGAGAATTAAGAAAGTCTTTTTAATCCTGTCTCTCCTC
TCAAACAATAATAAATCACATTTTTAAAAGGAGAAGGCAGGTGGGAGAGA
TGGAGGGGAGGAGGGGAGGGTGAAGGGAGGGAGGGCATTCGTCATCCATA
GGTTGTCCAGAAAGAGGATGATGTGAAACAGGTAAAAGAAAATTAGGTAT
GGAGAGATAAGCTGGTAACGATGAGACCAGAAGCAACAGGAAACAAAAAG
AAAGAAGACAACAACCGACAAGAAACAAAA
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Coding sequence (CDS) from alignment at scaffold_1:973739..975068-

>mRNA_1570 ID=mRNA_1570|Name=jgi.p|Nanoce1779_2|572725|organism=Nannochloropsis oceanica|type=CDS|length=1521bp|location=Sequence derived from alignment at scaffold_1:973739..975068- (Nannochloropsis oceanica)
GCCGTGTCCACCTAGTGCAAGCGTCCATCCAAGCCAAAACGTACGTGATC
AGCGGTCCGGCTGAGACGAAGACGATCCAAGAATTATTGCCCGGCATCAT
TCAGCAGCTGGGTGGGGATAACATCCAAGCGTTGAGCAAGCAATTCAGCG
AGCAGTACGGGCAGGGGGGTGGGATCGACCCGGCCCTGGTTGAGGAGGGG
GAAGAGGAAGAGGATGATGACGATGCCGTGCCTGATTTGGTGGAGAATTT
CGAGATGGCGGATGAGATTGACGCCGCCCGCGCTCGCATGATTGCCAAGC
GCTTTGGAGGCGCGGAGAACGTGAGAACAGGAGGGAAGGGCACGGTCCGG
CGGAAGCGCAAGGCACAGCACAAGAACTCTTCGACGGCGGATGACAAAAA
GCTTGGTGCCACATTGAAGAAGCTGGGCGTGACTAACATCCCGGGCATTG
AGGAGGCGAATATGTTCAAGAACAATGGCGAAGTCATCCACTTCAGGAAT
CCTAAGGGCCGTGTCCACCTAGTGCAAGCGTCCATCCAAGCCAAAACGTA
CGTGATCAGCGGTCCGGCTGAGACGAAGACGATCCAAGAATTATTGCCCG
GCATCATTCAGCAGCTGGGTGGGGATAACATCCAAGCGTTGAGCAAGCAA
TTCAGCGAGCAGTACGGGCAGGGGGGTGGGATCGACCCGGCCCTGGTTGA
GGAGGGGGAAGAGGAAGAGGATGATGACGATGCCGTGCCTGATTTGGTGG
AGAATTTCGAGATGGCGGATGAGATTGACGCCGCCCGCGCTCGCATGATT
GCCAAGCGCTTTGGAGGCGCGGAGAACGTGAGAACAGGAGGGAAGGGCAC
GGTCCGGCGGAAGCGCAAGGCACAGCACAAGAACTCTTCGACGGCGGATG
ACAAAAAGCTTGGTGCCACATTGAAGAAGCTGGGCGTGACTAACATCCCG
GGCATTGAGGAGGCGAATATGTTCAAGAACAATGGCGAAGTCATCCACTT
CAGGAATCCTAAGGGCCGTGTCCACCTAGTGCAAGCGTCCATCCAAGCCA
AAACGTACGTGATCAGCGGTCCGGCTGAGACGAAGACGATCCAAGAATTA
TTGCCCGGCATCATTCAGCAGCTGGGTGGGGATAACATCCAAGCGTTGAG
CAAGCAATTCAGCGAGCAGTACGGGCAGGGGGGTGGGATCGACCCGGCCC
TGGTTGAGGAGGGGGAAGAGGAAGAGGATGATGACGATGCCGTGCCTGAT
TTGGTGGAGAATTTCGAGATGGCGGATGAGATTGACGCCGCCCGCGCTCG
CATGATTGCCAAGCGCTTTGGAGGCGCGGAGAACGTGAGAACAGGAGGGA
AGGGCACGGTCCGGCGGAAGCGCAAGGCACAGCACAAGAACTCTTCGACG
GCGGATGACAAAAAGCTTGGTGCCACATTGAAGAAGCTGGGCGTGACTAA
CATCCCGGGCATTGAGGAGGCGAATATGTTCAAGAACAATGGCGAAGTCA
TCCACTTCAGGAATCCTAAGG
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Synonyms
Publications