jgi.p|Nanoce1779_2|576397, mRNA_157 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|576397
Unique NamemRNA_157
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1358
Alignment locationscaffold_3:404030..405479 +

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Properties
Property NameValue
TranscriptId576483
TrackFilteredModels2
ProteinId576397
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:404030..405479 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576397gene_157Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576397mRNA_157-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_157CDS_157Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_157 ID=mRNA_157|Name=jgi.p|Nanoce1779_2|576397|organism=Nannochloropsis oceanica|type=mRNA|length=1358bp
ACAGGCTAGAACTGCAGCTTACCCACGTGTAGACGTCACAGCGACTTGCC
CGGTCGGAAATGGGGGCTTCCCTACACCATCACCTACGCCCCCTCCCCCT
CTCCCTTCCCAGCCTCCTCCCACCCCTATCACTGCTGCTGATCCTGCTTC
TAACCACAGGCGCGGCCAAAGCATTTGTGACGCCATCGAATCCATCGGTA
GCCCCTGCACGTGTACAGCCACATCGTCTTACAAGAATGAGCTCGGCCGA
CCGCAGTGTGCGACAACCTAAAAAGACAATCGCATTCGAGGCCGCGCTAA
AGGATAAGGGCGCTCCAGCCGTCATACTGGTACGGCCTTACCTCGACGAG
AATATTGGTTCCTGTGCGCGTGCTATGCTCAATTTTGGGCTCACTGACCT
TCGCATCATTAACCCTTTTTGCGACCATTTAACGCCCATGGCACGGGCAC
GGGCATCGGGCGCTGATGCAATATTGGAGGCCGCCCGCATTTTTCCAGAC
GTAGGAGCAGCAGTCTCGGACTTGAGTGAAGTGATCGGCACGAGTGCTCG
GCAACGGGATATGACGGTAACAATTGTCACGCCTGAAGAAGCGGCGCGTC
TGGCGGTAGGTTCCTTGGAGTCTTTCGCACAAGGTGGGGCAAGGACAGGC
TATATGTTCGGCTCAGAGCGGAATGGATTGATAAATGAAGATTTGGTGTA
TGCGACGCGCCTGCTGCAGATACCGACGAATACTGCGTTTAGCAGCTTGA
ATCTCGGCCAGGCTGTGCAGATTTGCGGGTAAGTCAGTGAGTGGTAGTCG
CACGGGAGTGTAGGCAGAGGAGAAAAAGGGATCAATTTAAAGTGAATAAA
ATTGATACATAGATATCTGATGGACCCATCATCCCCCCCTTCTCGTTTAA
TTCTCTTTACCACCTACCACCTTCCCTTCCTTCTTCCCCCCCCCTCCAAG
CTACGAATATTGGAAAGCCCGCGCTCACCTCGGTGACAACCTCTACACAT
ACAAAGAAGCTACATTAAGCCTTGCCAAGGGCACCCGCCTCGCAACCACC
GGTGAGGTAGATGGTGTCTGGAAGAGAATACAAGACATGCTGGACGCAAC
TGAATTGAACCCAGACCCACATGTAAGGAGAGGGTTATATGATAGATTAA
AAAGCTGGTTGCTGAGATCAAGGCCTGATGTGAGGGATGTTAACGCCCTT
CACGGCGCTGTCTCGACGGTTGTTAGCAAGCATGAAAAATTGGAAAATTT
GAAAAATGAGTTGAAGGAAGCGAATGCTAGGGGACGGCAACGGGCGACGA
CGCCCAGGAGGGAGAAGGGGGGAGGGAAGGAGGGAGGGAAGGAGAGAGGG
AGGGAGGG
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protein sequence of jgi.p|Nanoce1779_2|576397

>mRNA_157-protein ID=mRNA_157-protein|Name=jgi.p|Nanoce1779_2|576397|organism=Nannochloropsis oceanica|type=polypeptide|length=241bp
MGASLHHHLRPLPLSLPSLLPPLSLLLILLLTTGAAKAFVTPSNPSVAPA
RVQPHRLTRMSSADRSVRQPKKTIAFEAALKDKGAPAVILVRPYLDENIG
SCARAMLNFGLTDLRIINPFCDHLTPMARARASGADAILEAARIFPDVGA
AVSDLSEVIGTSARQRDMTVTIVTPEEAARLAVGSLESFAQGGARTGYMF
GSERNGLINEDLVYATRLLQIPTNTAFSSLNLGQAVQICG*
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mRNA from alignment at scaffold_3:404030..405479+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_157 ID=mRNA_157|Name=jgi.p|Nanoce1779_2|576397|organism=Nannochloropsis oceanica|type=mRNA|length=1450bp|location=Sequence derived from alignment at scaffold_3:404030..405479+ (Nannochloropsis oceanica)
ACAGGCTAGAACTGCAGCTTACCCACGTGTAGACGTCACAGCGACTTGCC
CGGTCGGAAATGGGGGCTTCCCTACACCATCACCTACGCCCCCTCCCCCT
CTCCCTTCCCAGCCTCCTCCCACCCCTATCACTGCTGCTGATCCTGCTTC
TAACCACAGGCGCGGCCAAAGCATTTGTGACGCCATCGAATCCATCGGTA
GCCCCTGCACGTGTACAGCCACATCGTCTTACAAGAATGAGCTCGGCCGA
CCGCAGTGTGCGACAACCTAAAAAGACAATCGCATTCGAGGCCGCGCTAA
AGGATAAGGGCGCTCCAGCCGTCATACTGGTACGGCCTTACCTCGACGAG
AATATTGGTTCCTGTGCGCGTGCTATGCTCAATTTTGGGCTCACTGACCT
TCGCATCATTAACCCTTTTTGCGACCATTTAACGCCCATGGCACGGGCAC
GGGCATCGGGCGCTGATGCAATATTGGAGGCCGCCCGCATTTTTCCAGAC
GTAGGAGCAGCAGTCTCGGACTTGAGTGAAGTGATCGGCACGAGTGCTCG
GCAACGGGATATGACGGTAACAATTGTCACGCCTGAAGAAGCGGCGCGTC
TGGCGGTAGGTTCCTTGGAGTCTTTCGCACAAGGTATGTACAAGACAAAT
CTTTTTCTGCACTCCTGACTTCTTTCCAATCATCCTCCTTCCTGCCTCTT
TTTCCCCTCGTCTTTCCTACCGTAGGTGGGGCAAGGACAGGCTATATGTT
CGGCTCAGAGCGGAATGGATTGATAAATGAAGATTTGGTGTATGCGACGC
GCCTGCTGCAGATACCGACGAATACTGCGTTTAGCAGCTTGAATCTCGGC
CAGGCTGTGCAGATTTGCGGGTAAGTCAGTGAGTGGTAGTCGCACGGGAG
TGTAGGCAGAGGAGAAAAAGGGATCAATTTAAAGTGAATAAAATTGATAC
ATAGATATCTGATGGACCCATCATCCCCCCCTTCTCGTTTAATTCTCTTT
ACCACCTACCACCTTCCCTTCCTTCTTCCCCCCCCCTCCAAGCTACGAAT
ATTGGAAAGCCCGCGCTCACCTCGGTGACAACCTCTACACATACAAAGAA
GCTACATTAAGCCTTGCCAAGGGCACCCGCCTCGCAACCACCGGTGAGGT
AGATGGTGTCTGGAAGAGAATACAAGACATGCTGGACGCAACTGAATTGA
ACCCAGACCCACATGTAAGGAGAGGGTTATATGATAGATTAAAAAGCTGG
TTGCTGAGATCAAGGCCTGATGTGAGGGATGTTAACGCCCTTCACGGCGC
TGTCTCGACGGTTGTTAGCAAGCATGAAAAATTGGAAAATTTGAAAAATG
AGTTGAAGGAAGCGAATGCTAGGGGACGGCAACGGGCGACGACGCCCAGG
AGGGAGAAGGGGGGAGGGAAGGAGGGAGGGAAGGAGAGAGGGAGGGAGGG
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Coding sequence (CDS) from alignment at scaffold_3:404030..405479+

>mRNA_157 ID=mRNA_157|Name=jgi.p|Nanoce1779_2|576397|organism=Nannochloropsis oceanica|type=CDS|length=1446bp|location=Sequence derived from alignment at scaffold_3:404030..405479+ (Nannochloropsis oceanica)
ATGGGGGCTTCCCTACACCATCACCTACGCCCCCTCCCCCTCTCCCTTCC
CAGCCTCCTCCCACCCCTATCACTGCTGCTGATCCTGCTTCTAACCACAG
GCGCGGCCAAAGCATTTGTGACGCCATCGAATCCATCGGTAGCCCCTGCA
CGTGTACAGCCACATCGTCTTACAAGAATGAGCTCGGCCGACCGCAGTGT
GCGACAACCTAAAAAGACAATCGCATTCGAGGCCGCGCTAAAGGATAAGG
GCGCTCCAGCCGTCATACTGGTACGGCCTTACCTCGACGAGAATATTGGT
TCCTGTGCGCGTGCTATGCTCAATTTTGGGCTCACTGACCTTCGCATCAT
TAACCCTTTTTGCGACCATTTAACGCCCATGGCACGGGCACGGGCATCGG
GCGCTGATGCAATATTGGAGGCCGCCCGCATTTTTCCAGACGTAGGAGCA
GCAGTCTCGGACTTGAGTGAAGTGATCGGCACGAGTGCTCGGCAACGGGA
TATGACGGTAACAATTGTCACGCCTGAAGAAGCGGCGCGTCTGGCGGTAG
GTTCCTTGGAGTCTTTCGCACAAGGTGGGGCAAGGACAGGCTATATGTTC
GGCTCAGAGCGGAATGGATTGATAAATGAAGATTTGGTGTATGCGACGCG
CCTGCTGCAGATACCGACGAATACTGCGTTTAGCAGCTTGAATCTCGGCC
AGGCTGTGCAGATTTGCGGGTAAATGGGGGCTTCCCTACACCATCACCTA
CGCCCCCTCCCCCTCTCCCTTCCCAGCCTCCTCCCACCCCTATCACTGCT
GCTGATCCTGCTTCTAACCACAGGCGCGGCCAAAGCATTTGTGACGCCAT
CGAATCCATCGGTAGCCCCTGCACGTGTACAGCCACATCGTCTTACAAGA
ATGAGCTCGGCCGACCGCAGTGTGCGACAACCTAAAAAGACAATCGCATT
CGAGGCCGCGCTAAAGGATAAGGGCGCTCCAGCCGTCATACTGGTACGGC
CTTACCTCGACGAGAATATTGGTTCCTGTGCGCGTGCTATGCTCAATTTT
GGGCTCACTGACCTTCGCATCATTAACCCTTTTTGCGACCATTTAACGCC
CATGGCACGGGCACGGGCATCGGGCGCTGATGCAATATTGGAGGCCGCCC
GCATTTTTCCAGACGTAGGAGCAGCAGTCTCGGACTTGAGTGAAGTGATC
GGCACGAGTGCTCGGCAACGGGATATGACGGTAACAATTGTCACGCCTGA
AGAAGCGGCGCGTCTGGCGGTAGGTTCCTTGGAGTCTTTCGCACAAGGTG
GGGCAAGGACAGGCTATATGTTCGGCTCAGAGCGGAATGGATTGATAAAT
GAAGATTTGGTGTATGCGACGCGCCTGCTGCAGATACCGACGAATACTGC
GTTTAGCAGCTTGAATCTCGGCCAGGCTGTGCAGATTTGCGGGTAA
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Synonyms
Publications