jgi.p|Nanoce1779_2|572721, mRNA_1569 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|572721
Unique NamemRNA_1569
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length904
Alignment locationscaffold_1:972042..972945 -

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Properties
Property NameValue
TranscriptId572807
TrackFilteredModels2
ProteinId572721
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:972042..972945 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572721gene_1569Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572721mRNA_1569-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1569CDS_1569Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1569 ID=mRNA_1569|Name=jgi.p|Nanoce1779_2|572721|organism=Nannochloropsis oceanica|type=mRNA|length=904bp
CAGTCCGCCGCCGCCCCTCCCTCACCAGCGGGCAGCATGCACGCCGCTGC
GGCAGCCGATAACAGTGTGATCACCCTGCGGGGATCCACGGACATTGTGA
TGGAGTTCTTCGAGCATGCCATCACGTGCATTTTGTACCAACGAGGCATC
TACCCCCCAGAAGACTTTGAACGCAAGACCAAGTACGGCCTCGCCTTGCA
CGTGGCCAAAGAAAGGGGCTTGGTGGACTATTTGGAGAACGTCCTCACAC
AGCTCGGACAATGGCTGACATCTAGGAATGTACAGAAATTGGTGGTGGTT
GTGACGGGGATGGAGTCGAATGCCGTGCTTGAACGTTGGGTATTTAGCGT
GGAGACTGCACAGGAAGCAGCTACTAACCCCCAGGGTTTTCAAGCACAGA
AGTCCCAGAAGGATATCACAAGCGAGATTGCTGCAATTATCCGGCAGATT
ACGTGCTCGGTGTCGTTCATGCCTCTGTTGTCCGAAAGATGTTCGTTTGA
TTTGTTGGTCTACACGGACAAAAACGTATTGGTCCCGGCCACATGGGAGG
ACTCCGACCCACGGCTGATACAGCATGCCGAGGAGGTGAGGCTGCGGTCG
GTGAATACAAAGGTACACAAGGTAGACACCATGGTGGCTTATCGTATGGA
GCCTGCGGCGCAGGATTAGGAAGTGAGGAAGGGAGGGAGGGGTTCATCAT
TGCGATAACTGGAGCCAGGATGAGTTTATTATGCGGTGAACGGAGCCAGG
AGGCAAATGAGGGAGGCAATTGAGAGATGGAAAAATGCGAAGTTGGAAAT
TGTACAAATCGCAAGAGAGTGAGGAGTCTGTACGGTAAGCGGAGGAAAGG
CTACCCGGCGAATTGAACGGGGGAGAAAAGAACGTGGATGAGAAAACAAC
GTGA
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protein sequence of jgi.p|Nanoce1779_2|572721

>mRNA_1569-protein ID=mRNA_1569-protein|Name=jgi.p|Nanoce1779_2|572721|organism=Nannochloropsis oceanica|type=polypeptide|length=211bp
MHAAAAADNSVITLRGSTDIVMEFFEHAITCILYQRGIYPPEDFERKTKY
GLALHVAKERGLVDYLENVLTQLGQWLTSRNVQKLVVVVTGMESNAVLER
WVFSVETAQEAATNPQGFQAQKSQKDITSEIAAIIRQITCSVSFMPLLSE
RCSFDLLVYTDKNVLVPATWEDSDPRLIQHAEEVRLRSVNTKVHKVDTMV
AYRMEPAAQD*
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mRNA from alignment at scaffold_1:972042..972945-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1569 ID=mRNA_1569|Name=jgi.p|Nanoce1779_2|572721|organism=Nannochloropsis oceanica|type=mRNA|length=904bp|location=Sequence derived from alignment at scaffold_1:972042..972945- (Nannochloropsis oceanica)
CAGTCCGCCGCCGCCCCTCCCTCACCAGCGGGCAGCATGCACGCCGCTGC
GGCAGCCGATAACAGTGTGATCACCCTGCGGGGATCCACGGACATTGTGA
TGGAGTTCTTCGAGCATGCCATCACGTGCATTTTGTACCAACGAGGCATC
TACCCCCCAGAAGACTTTGAACGCAAGACCAAGTACGGCCTCGCCTTGCA
CGTGGCCAAAGAAAGGGGCTTGGTGGACTATTTGGAGAACGTCCTCACAC
AGCTCGGACAATGGCTGACATCTAGGAATGTACAGAAATTGGTGGTGGTT
GTGACGGGGATGGAGTCGAATGCCGTGCTTGAACGTTGGGTATTTAGCGT
GGAGACTGCACAGGAAGCAGCTACTAACCCCCAGGGTTTTCAAGCACAGA
AGTCCCAGAAGGATATCACAAGCGAGATTGCTGCAATTATCCGGCAGATT
ACGTGCTCGGTGTCGTTCATGCCTCTGTTGTCCGAAAGATGTTCGTTTGA
TTTGTTGGTCTACACGGACAAAAACGTATTGGTCCCGGCCACATGGGAGG
ACTCCGACCCACGGCTGATACAGCATGCCGAGGAGGTGAGGCTGCGGTCG
GTGAATACAAAGGTACACAAGGTAGACACCATGGTGGCTTATCGTATGGA
GCCTGCGGCGCAGGATTAGGAAGTGAGGAAGGGAGGGAGGGGTTCATCAT
TGCGATAACTGGAGCCAGGATGAGTTTATTATGCGGTGAACGGAGCCAGG
AGGCAAATGAGGGAGGCAATTGAGAGATGGAAAAATGCGAAGTTGGAAAT
TGTACAAATCGCAAGAGAGTGAGGAGTCTGTACGGTAAGCGGAGGAAAGG
CTACCCGGCGAATTGAACGGGGGAGAAAAGAACGTGGATGAGAAAACAAC
GTGA
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Coding sequence (CDS) from alignment at scaffold_1:972042..972945-

>mRNA_1569 ID=mRNA_1569|Name=jgi.p|Nanoce1779_2|572721|organism=Nannochloropsis oceanica|type=CDS|length=633bp|location=Sequence derived from alignment at scaffold_1:972042..972945- (Nannochloropsis oceanica)
ATGCACGCCGCTGCGGCAGCCGATAACAGTGTGATCACCCTGCGGGGATC
CACGGACATTGTGATGGAGTTCTTCGAGCATGCCATCACGTGCATTTTGT
ACCAACGAGGCATCTACCCCCCAGAAGACTTTGAACGCAAGACCAAGTAC
GGCCTCGCCTTGCACGTGGCCAAAGAAAGGGGCTTGGTGGACTATTTGGA
GAACGTCCTCACACAGCTCGGACAATGGCTGACATCTAGGAATGTACAGA
AATTGGTGGTGGTTGTGACGGGGATGGAGTCGAATGCCGTGCTTGAACGT
TGGGTATTTAGCGTGGAGACTGCACAGGAAGCAGCTACTAACCCCCAGGG
TTTTCAAGCACAGAAGTCCCAGAAGGATATCACAAGCGAGATTGCTGCAA
TTATCCGGCAGATTACGTGCTCGGTGTCGTTCATGCCTCTGTTGTCCGAA
AGATGTTCGTTTGATTTGTTGGTCTACACGGACAAAAACGTATTGGTCCC
GGCCACATGGGAGGACTCCGACCCACGGCTGATACAGCATGCCGAGGAGG
TGAGGCTGCGGTCGGTGAATACAAAGGTACACAAGGTAGACACCATGGTG
GCTTATCGTATGGAGCCTGCGGCGCAGGATTAG
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Synonyms
Publications