jgi.p|Nanoce1779_2|572719, mRNA_1567 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|572719
Unique NamemRNA_1567
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length950
Alignment locationscaffold_1:969074..970187 -

Link to JBrowse

Properties
Property NameValue
TranscriptId572805
TrackFilteredModels2
ProteinId572719
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:969074..970187 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572719gene_1567Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572719mRNA_1567-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1567CDS_1567Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1567 ID=mRNA_1567|Name=jgi.p|Nanoce1779_2|572719|organism=Nannochloropsis oceanica|type=mRNA|length=950bp
ACAGTGCCCAGTCACTTCGAAAAAATCCATCTGCTGAATGGCGCAGCGCG
CAGTCCTGAAATTTCGGGTCTTTGTCGTCTCTCTGGTCCTTTGAATATTC
CAGCTCCACCAGCGGCGCACCCACAGCAGCAGCACACCCACAATGGCAGC
AGCACCCCCTAAAGTTAAGGGCATTTGTTTCGACATGGACGGCACTCTGA
CGAATAGCGACAACCTTCATTTTGAGACGTACCGTGATACGTTGCTCAAA
ATGGCGCCCGAATACAACAGTGGGAAGCCTTTGGAGCGGGCTTTCTACGA
CGCAAAACTCTCGGGAAGCGCTAACGAGATAATCGTGCCTACCCTCCTCC
CACACTGGGAGCGGGCCCGCATGGAAGAACTATGGTTGGCTAAGGAAGCT
TTATACAGGAAACGGTCTGTGGATATCTCCCCTTTGCCAGGAGTCCTTCG
TATCCTGGATTGGTGTGATGCCCAAAAGGTTGACTATGTCTTGGTAACGA
ATGCGCCAAGAGTTGACTGTATCCACACCTTACACTCCCTCAAGCTGAAT
GAGCGCTTCGACAACAGCAAGATTGTGATTGGAGAGGAAGTAGCCAGGCC
AAAGCCTTTTCCAGACGCGTACAACGAGGGTTTGCGACGCTTGGGTCTTG
CTGCACATGAGTGTATTGCATTCGAAGATTCATTCAGTGGGTTAGCGTCA
GCAGTAGCAGCAGGGATACCGACCGTGGCGGTTTTGACTTCTCGCGCGGA
AGGGGAGATGACAGATAAAGGCGCGTTCATGACGATAAAGGATTTTGAGG
CCCCGAGCTTGTGGGAGATATTGGAGGCGGGGAGGTAGGGAGGTGTGTGT
CAAGCCTATAAGATGAAGAAATAGGCGAAGATGACGAGCATTTTCCCATT
ATTTTAATTTAGCAAATCCAAATAAAGAACAATACATACGCCACAACTCA
back to top

protein sequence of jgi.p|Nanoce1779_2|572719

>mRNA_1567-protein ID=mRNA_1567-protein|Name=jgi.p|Nanoce1779_2|572719|organism=Nannochloropsis oceanica|type=polypeptide|length=232bp
MAAAPPKVKGICFDMDGTLTNSDNLHFETYRDTLLKMAPEYNSGKPLERA
FYDAKLSGSANEIIVPTLLPHWERARMEELWLAKEALYRKRSVDISPLPG
VLRILDWCDAQKVDYVLVTNAPRVDCIHTLHSLKLNERFDNSKIVIGEEV
ARPKPFPDAYNEGLRRLGLAAHECIAFEDSFSGLASAVAAGIPTVAVLTS
RAEGEMTDKGAFMTIKDFEAPSLWEILEAGR*
back to top

mRNA from alignment at scaffold_1:969074..970187-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1567 ID=mRNA_1567|Name=jgi.p|Nanoce1779_2|572719|organism=Nannochloropsis oceanica|type=mRNA|length=1114bp|location=Sequence derived from alignment at scaffold_1:969074..970187- (Nannochloropsis oceanica)
ACAGTGCCCAGTCACTTCGAAAAAATCCATCTGCTGAATGGCGCAGCGCG
CAGTCCTGAAATTTCGGGTCTTTGTCGTCTCTCTGGTCCTTTGGTACGTG
CTAGCACTTCCTTCCCCTCCCCTACCGTGCCGCCCCAGCCCTCAGCCGTG
CTTATACTTCGGGGGGAGAGGACTCCCTCCCCTTCCCACAGGTCCTACAG
CGCGGTCGCGTTTACTACAAAAGTCTCACTAAAATCGCCCCTGTCGTGCT
CTGCAAGAATATTCCAGCTCCACCAGCGGCGCACCCACAGCAGCAGCACA
CCCACAATGGCAGCAGCACCCCCTAAAGTTAAGGGCATTTGTTTCGACAT
GGACGGCACTCTGACGAATAGCGACAACCTTCATTTTGAGACGTACCGTG
ATACGTTGCTCAAAATGGCGCCCGAATACAACAGTGGGAAGCCTTTGGAG
CGGGCTTTCTACGACGCAAAACTCTCGGGAAGCGCTAACGAGATAATCGT
GCCTACCCTCCTCCCACACTGGGAGCGGGCCCGCATGGAAGAACTATGGT
TGGCTAAGGAAGCTTTATACAGGAAACGGTCTGTGGATATCTCCCCTTTG
CCAGGAGTCCTTCGTATCCTGGATTGGTGTGATGCCCAAAAGGTTGACTA
TGTCTTGGTAACGAATGCGCCAAGAGTTGACTGTATCCACACCTTACACT
CCCTCAAGCTGAATGAGCGCTTCGACAACAGCAAGATTGTGATTGGAGAG
GAAGTAGCCAGGCCAAAGCCTTTTCCAGACGCGTACAACGAGGGTTTGCG
ACGCTTGGGTCTTGCTGCACATGAGTGTATTGCATTCGAAGATTCATTCA
GTGGGTTAGCGTCAGCAGTAGCAGCAGGGATACCGACCGTGGCGGTTTTG
ACTTCTCGCGCGGAAGGGGAGATGACAGATAAAGGCGCGTTCATGACGAT
AAAGGATTTTGAGGCCCCGAGCTTGTGGGAGATATTGGAGGCGGGGAGGT
AGGGAGGTGTGTGTCAAGCCTATAAGATGAAGAAATAGGCGAAGATGACG
AGCATTTTCCCATTATTTTAATTTAGCAAATCCAAATAAAGAACAATACA
TACGCCACAACTCA
back to top

Coding sequence (CDS) from alignment at scaffold_1:969074..970187-

>mRNA_1567 ID=mRNA_1567|Name=jgi.p|Nanoce1779_2|572719|organism=Nannochloropsis oceanica|type=CDS|length=696bp|location=Sequence derived from alignment at scaffold_1:969074..970187- (Nannochloropsis oceanica)
ATGGCAGCAGCACCCCCTAAAGTTAAGGGCATTTGTTTCGACATGGACGG
CACTCTGACGAATAGCGACAACCTTCATTTTGAGACGTACCGTGATACGT
TGCTCAAAATGGCGCCCGAATACAACAGTGGGAAGCCTTTGGAGCGGGCT
TTCTACGACGCAAAACTCTCGGGAAGCGCTAACGAGATAATCGTGCCTAC
CCTCCTCCCACACTGGGAGCGGGCCCGCATGGAAGAACTATGGTTGGCTA
AGGAAGCTTTATACAGGAAACGGTCTGTGGATATCTCCCCTTTGCCAGGA
GTCCTTCGTATCCTGGATTGGTGTGATGCCCAAAAGGTTGACTATGTCTT
GGTAACGAATGCGCCAAGAGTTGACTGTATCCACACCTTACACTCCCTCA
AGCTGAATGAGCGCTTCGACAACAGCAAGATTGTGATTGGAGAGGAAGTA
GCCAGGCCAAAGCCTTTTCCAGACGCGTACAACGAGGGTTTGCGACGCTT
GGGTCTTGCTGCACATGAGTGTATTGCATTCGAAGATTCATTCAGTGGGT
TAGCGTCAGCAGTAGCAGCAGGGATACCGACCGTGGCGGTTTTGACTTCT
CGCGCGGAAGGGGAGATGACAGATAAAGGCGCGTTCATGACGATAAAGGA
TTTTGAGGCCCCGAGCTTGTGGGAGATATTGGAGGCGGGGAGGTAG
back to top
Synonyms
Publications