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Properties
| Property Name | Value |
|---|
| TranscriptId | 572802 |
| Track | FilteredModels2 |
| ProteinId | 572716 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_1 | supercontig | scaffold_1:967517..969063 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_1566 ID=mRNA_1566|Name=jgi.p|Nanoce1779_2|572716|organism=Nannochloropsis oceanica|type=mRNA|length=1378bp
CAGGACACTTTCCACCTTCCCCTTAAGTCATCATGAAGTTCCTTGCGGCC
CTTACTGGCATCCTCGCCACCGCCTCCGCCTTTGTGCCCTCCGCCCCCCT
CCCCTCTGGCCGTCGAAGCAGCGCCCTCAGAATGTCGGCCTCGGACATGA
TTGGCATTGACGTTGAGACCGGCGGCCTCTTCGACCCTCTTGGTTTCTCC
AAGGACGAGCAGTCCCTATACCGATACCGCGCTGTGGAGCTCAAGCACGG
CCGAGTCGCAATGCTTGCATGCCTCGGCACCCTCGTCCAGTCCTACACCC
ATCTCCCCGATGACGTCTTCTCCAACCCCCGCCCCCTCGCTGCGCTTGCC
CAGATCTCGACTCAGCGCCCCTTGGCCGTGCTCCAGATTGTCCTGGCCCT
CGTCTTCATTGAGGTGACGAGCGGAAAGCAGGACCCGGAGCTGGCCCCTG
GGCAGATTGGTCGATTCGGGGAGGCGTTCAAGCCCGAGGGCGAGGAGGAG
ATGGCGGCCGTGCAGCTGAAGGAGTTGAAGAATGGACGGTTGGCAATGGT
AAGTGCATGTAGTGCTGTCTGAGCGGATAATTTAGTGTGTTGTGCTCGTC
GGGGTTCAGTGCCAGGAGTGTATATCGCGCACGAGTTCTGGCCTCTTTTT
AAGCAAGCCTCGCATTGTAGCTCCCCTCTCCTTTCCCCTCTCTTTTCTCT
GTTGTCTCGCCTTCATCTCAATTATTTATATTCTCACCTCGCTATTCCGT
CATCCCTTTCCCACCCTCTGCCTCTCTGGTCCCTCCAGATTGCTATTATT
GGACAGTGGGTGCAGGAGCTGTTGACGGGCCAAGGCCCCATTGAGCAGAT
CACGGCCGGGCACATCTCCCCCTTCGGTGATGGACAAGGACTTTTCTGTA
AGTAATTAATTGTATTCAAGAAAGAGGAGGGGTAGTGACACAAGAGATAA
GAGGAAAAGAGAAAATGAGGATGGTTGGATAGGTGTCACAGCCAGATGAA
GTGGCTGGATCGTTGATTGACTCACAAATACACCTCCTTTCTGTTTAATC
ACCACCGCAACAGAAATTACAGAAATCGTGTCTTGAGAGCGAGTAAGACG
AGTAAGACGACGAAAGATACAGAGAAAGAAGACCTGCGCTGAGTCTGAGA
AGAGAGCGCAATTTTTTATGGGTCGGAGGGAGGGGGACGGAAGAAAGGTG
AAGGGAACGGAAATTCAACTGCTGCTAGGAGTTGCTTACAAGCAGATCAA
CATGGTAAAGGGGGAGACGCATTAATTTTGATCGTAGTTGTCTAAGCAAG
GGGCACGGGGCAGGACAAGGGGCTGAGTCCACGAGGGGAGAAAGGAACGA
AAAAAGAAAACAGAGTCATTCTAGTGAA back to topprotein sequence of jgi.p|Nanoce1779_2|572716 >mRNA_1566-protein ID=mRNA_1566-protein|Name=jgi.p|Nanoce1779_2|572716|organism=Nannochloropsis oceanica|type=polypeptide|length=180bp
MKFLAALTGILATASAFVPSAPLPSGRRSSALRMSASDMIGIDVETGGLF
DPLGFSKDEQSLYRYRAVELKHGRVAMLACLGTLVQSYTHLPDDVFSNPR
PLAALAQISTQRPLAVLQIVLALVFIEVTSGKQDPELAPGQIGRFGEAFK
PEGEEEMAAVQLKELKNGRLAMVSACSAV* back to topmRNA from alignment at scaffold_1:967517..969063+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_1566 ID=mRNA_1566|Name=jgi.p|Nanoce1779_2|572716|organism=Nannochloropsis oceanica|type=mRNA|length=1547bp|location=Sequence derived from alignment at scaffold_1:967517..969063+ (Nannochloropsis oceanica)
CAGGACACTTTCCACCTTCCCCTTAAGTCATCATGAAGTTCCTTGCGGCC
CTTACTGGCATCCTCGCCACCGCCTCCGCCTTTGTAAGTACCCACATAGT
GGCTCAAGTGAAGTAGAAGGATCGTCGTCGTGTGCCTTTCTTGCCTTATG
TGATTGTGTTTGTCTTCCCGCTTGCACCCTTGATGTGTGCTTCTCTGTCT
GTGTCCTGCTGGGCTCAACGCTCACCTTTCCCCTCTTGTCATATTTACTC
AGGTGCCCTCCGCCCCCCTCCCCTCTGGCCGTCGAAGCAGCGCCCTCAGA
ATGTCGGCCTCGGACATGATTGGCATTGACGTTGAGACCGGCGGCCTCTT
CGACCCTCTTGGTTTCTCCAAGGACGAGCAGTCCCTATACCGATACCGCG
CTGTGGAGCTCAAGCACGGCCGAGTCGCAATGCTTGCATGCCTCGGCACC
CTCGTCCAGTCCTACACCCATCTCCCCGATGACGTCTTCTCCAACCCCCG
CCCCCTCGCTGCGCTTGCCCAGATCTCGACTCAGCGCCCCTTGGCCGTGC
TCCAGATTGTCCTGGCCCTCGTCTTCATTGAGGTGACGAGCGGAAAGCAG
GACCCGGAGCTGGCCCCTGGGCAGATTGGTCGATTCGGGGAGGCGTTCAA
GCCCGAGGGCGAGGAGGAGATGGCGGCCGTGCAGCTGAAGGAGTTGAAGA
ATGGACGGTTGGCAATGGTAAGTGCATGTAGTGCTGTCTGAGCGGATAAT
TTAGTGTGTTGTGCTCGTCGGGGTTCAGTGCCAGGAGTGTATATCGCGCA
CGAGTTCTGGCCTCTTTTTAAGCAAGCCTCGCATTGTAGCTCCCCTCTCC
TTTCCCCTCTCTTTTCTCTGTTGTCTCGCCTTCATCTCAATTATTTATAT
TCTCACCTCGCTATTCCGTCATCCCTTTCCCACCCTCTGCCTCTCTGGTC
CCTCCAGATTGCTATTATTGGACAGTGGGTGCAGGAGCTGTTGACGGGCC
AAGGCCCCATTGAGCAGATCACGGCCGGGCACATCTCCCCCTTCGGTGAT
GGACAAGGACTTTTCTGTAAGTAATTAATTGTATTCAAGAAAGAGGAGGG
GTAGTGACACAAGAGATAAGAGGAAAAGAGAAAATGAGGATGGTTGGATA
GGTGTCACAGCCAGATGAAGTGGCTGGATCGTTGATTGACTCACAAATAC
ACCTCCTTTCTGTTTAATCACCACCGCAACAGAAATTACAGAAATCGTGT
CTTGAGAGCGAGTAAGACGAGTAAGACGACGAAAGATACAGAGAAAGAAG
ACCTGCGCTGAGTCTGAGAAGAGAGCGCAATTTTTTATGGGTCGGAGGGA
GGGGGACGGAAGAAAGGTGAAGGGAACGGAAATTCAACTGCTGCTAGGAG
TTGCTTACAAGCAGATCAACATGGTAAAGGGGGAGACGCATTAATTTTGA
TCGTAGTTGTCTAAGCAAGGGGCACGGGGCAGGACAAGGGGCTGAGTCCA
CGAGGGGAGAAAGGAACGAAAAAAGAAAACAGAGTCATTCTAGTGAA back to topCoding sequence (CDS) from alignment at scaffold_1:967517..969063+ >mRNA_1566 ID=mRNA_1566|Name=jgi.p|Nanoce1779_2|572716|organism=Nannochloropsis oceanica|type=CDS|length=1080bp|location=Sequence derived from alignment at scaffold_1:967517..969063+ (Nannochloropsis oceanica)
ATGAAGTTCCTTGCGGCCCTTACTGGCATCCTCGCCACCGCCTCCGCCTT
TGTGCCCTCCGCCCCCCTCCCCTCTGGCCGTCGAAGCAGCGCCCTCAGAA
TGTCGGCCTCGGACATGATTGGCATTGACGTTGAGACCGGCGGCCTCTTC
GACCCTCTTGGTTTCTCCAAGGACGAGCAGTCCCTATACCGATACCGCGC
TGTGGAGCTCAAGCACGGCCGAGTCGCAATGCTTGCATGCCTCGGCACCC
TCGTCCAGTCCTACACCCATCTCCCCGATGACGTCTTCTCCAACCCCCGC
CCCCTCGCTGCGCTTGCCCAGATCTCGACTCAGCGCCCCTTGGCCGTGCT
CCAGATTGTCCTGGCCCTCGTCTTCATTGAGGTGACGAGCGGAAAGCAGG
ACCCGGAGCTGGCCCCTGGGCAGATTGGTCGATTCGGGGAGGCGTTCAAG
CCCGAGGGCGAGGAGGAGATGGCGGCCGTGCAGCTGAAGGAGTTGAAGAA
TGGACGGTTGGCAATGGTAAGTGCATGTAGTGCTGTCTGAATGAAGTTCC
TTGCGGCCCTTACTGGCATCCTCGCCACCGCCTCCGCCTTTGTGCCCTCC
GCCCCCCTCCCCTCTGGCCGTCGAAGCAGCGCCCTCAGAATGTCGGCCTC
GGACATGATTGGCATTGACGTTGAGACCGGCGGCCTCTTCGACCCTCTTG
GTTTCTCCAAGGACGAGCAGTCCCTATACCGATACCGCGCTGTGGAGCTC
AAGCACGGCCGAGTCGCAATGCTTGCATGCCTCGGCACCCTCGTCCAGTC
CTACACCCATCTCCCCGATGACGTCTTCTCCAACCCCCGCCCCCTCGCTG
CGCTTGCCCAGATCTCGACTCAGCGCCCCTTGGCCGTGCTCCAGATTGTC
CTGGCCCTCGTCTTCATTGAGGTGACGAGCGGAAAGCAGGACCCGGAGCT
GGCCCCTGGGCAGATTGGTCGATTCGGGGAGGCGTTCAAGCCCGAGGGCG
AGGAGGAGATGGCGGCCGTGCAGCTGAAGGAGTTGAAGAATGGACGGTTG
GCAATGGTAAGTGCATGTAGTGCTGTCTGA back to top
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