jgi.p|Nanoce1779_2|572708, mRNA_1564 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|572708
Unique NamemRNA_1564
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1299
Alignment locationscaffold_1:963707..965005 -

Link to JBrowse

Properties
Property NameValue
TranscriptId572794
TrackFilteredModels2
ProteinId572708
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:963707..965005 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572708gene_1564Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572708mRNA_1564-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1564CDS_1564Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1564 ID=mRNA_1564|Name=jgi.p|Nanoce1779_2|572708|organism=Nannochloropsis oceanica|type=mRNA|length=1299bp
GTGGCCCGTGCCCTTCGGTCGCCGGACCTCCCCCCCCCACCCCACCCCCC
ACGTAAAAACTACTGCTACTAATGCTGCGTCGAATTCCACGAGCAGATGC
AGTGGGAGTGGCACCGCTGGTACTGTGGGTACCAATACTGGACATGCTAC
TATCAAACCGATCAAGAGGCGCCATACCACTCCTGCTCCCCCCCTCGTCC
ATCGCACGGGCAAGCTGCAGATACGCGGCACCCAATCCACCATTCCCGTG
AGTATTGCTATTCCAGCCTCCCCCTCCCCCTATAGAGGACGTATAAGAGT
CAACCGAATAATTGTTCGCTTGCAAATACAACTGCTGCTGCTGCTGCTGC
TGCGCCGCCTGCAACAGTTGGCTCGATTGCCGTGGGGAGGGAGAAGGAGT
CACATTCTCAATCCTACGTTCCGTGGTTCCTCGAATCGCGAACTCCAGCC
CGAGCATCATGTTGGTAATAAACCGCCATTTCGGGCTTCCAAACACGACG
TTGGTCGCGGCCTTGTTGCGGGACCGAGCGCAAGGGGTGTGGTAACACGA
TACATCCCTAGAGCCCAGTGTCCGGAGAAACGTCTCGATGTGCTTGGACC
CCGCCTTAAATTCCTCCCACGAAATAGCAGCATGGTCTACCTCCCCCCCT
TTTTCGCCCTGCATCCTGTCCTCTTGCCCTCCCTCACCTCCCTCCTTCTC
TCCCTCCTGCCCAACGTCCAGGCGACAAAACACAGTATTTACGAACCGCT
TCGCACAAACGTCATCACTTTGCAGGTTCAAACCCGTCAAAATCGAGAAC
GCGGTTTCTATCGTCGTCGTCAAGTCCGTCTTATCGATACGCCCGTCCTT
ATTCTGGTCACACAGATCAAATCCGTACCTCAACTTCTCCACCTCCCTCC
CATGCTCCATCGTCAGCAACCACCGCAAGAAATCCCCGAGACTGATGACG
CCGTCCTTATCCTTATCAATCGTCGAAAACAAGACCCGAGGAAACTCGCT
CGTCACGCACCCACCCCCCACAGCACCCAGACACGCCTGGAATTCAGACG
CCTGTATCTGTCCGTCCCCCGCTGCCGGCGACCCATCCAGATTCGAAAAC
AGCTGCAATGCCTCCTCCTCCGCCCTCTCCACCTTCTCAATCCCCCATTT
CGCAACCAGCACCTCCCTTTCGTGCTTCAATAGTGTGAGATGTCTTTTCC
CCGAAAATTTTTCCTTCACCATCTGCATCGCCTTCTTCGCTGCTCCAGTG
CTGCTTCCATTTAATGTTCCCCCACCACTCCCACTGCTTCCACTGATAC
back to top

protein sequence of jgi.p|Nanoce1779_2|572708

>mRNA_1564-protein ID=mRNA_1564-protein|Name=jgi.p|Nanoce1779_2|572708|organism=Nannochloropsis oceanica|type=polypeptide|length=184bp
MVYLPPFFALHPVLLPSLTSLLLSLLPNVQATKHSIYEPLRTNVITLQVQ
TRQNRERGFYRRRQVRLIDTPVLILVTQIKSVPQLLHLPPMLHRQQPPQE
IPETDDAVLILINRRKQDPRKLARHAPTPHSTQTRLEFRRLYLSVPRCRR
PIQIRKQLQCLLLRPLHLLNPPFRNQHLPFVLQ*
back to top

mRNA from alignment at scaffold_1:963707..965005-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1564 ID=mRNA_1564|Name=jgi.p|Nanoce1779_2|572708|organism=Nannochloropsis oceanica|type=mRNA|length=1299bp|location=Sequence derived from alignment at scaffold_1:963707..965005- (Nannochloropsis oceanica)
GTGGCCCGTGCCCTTCGGTCGCCGGACCTCCCCCCCCCACCCCACCCCCC
ACGTAAAAACTACTGCTACTAATGCTGCGTCGAATTCCACGAGCAGATGC
AGTGGGAGTGGCACCGCTGGTACTGTGGGTACCAATACTGGACATGCTAC
TATCAAACCGATCAAGAGGCGCCATACCACTCCTGCTCCCCCCCTCGTCC
ATCGCACGGGCAAGCTGCAGATACGCGGCACCCAATCCACCATTCCCGTG
AGTATTGCTATTCCAGCCTCCCCCTCCCCCTATAGAGGACGTATAAGAGT
CAACCGAATAATTGTTCGCTTGCAAATACAACTGCTGCTGCTGCTGCTGC
TGCGCCGCCTGCAACAGTTGGCTCGATTGCCGTGGGGAGGGAGAAGGAGT
CACATTCTCAATCCTACGTTCCGTGGTTCCTCGAATCGCGAACTCCAGCC
CGAGCATCATGTTGGTAATAAACCGCCATTTCGGGCTTCCAAACACGACG
TTGGTCGCGGCCTTGTTGCGGGACCGAGCGCAAGGGGTGTGGTAACACGA
TACATCCCTAGAGCCCAGTGTCCGGAGAAACGTCTCGATGTGCTTGGACC
CCGCCTTAAATTCCTCCCACGAAATAGCAGCATGGTCTACCTCCCCCCCT
TTTTCGCCCTGCATCCTGTCCTCTTGCCCTCCCTCACCTCCCTCCTTCTC
TCCCTCCTGCCCAACGTCCAGGCGACAAAACACAGTATTTACGAACCGCT
TCGCACAAACGTCATCACTTTGCAGGTTCAAACCCGTCAAAATCGAGAAC
GCGGTTTCTATCGTCGTCGTCAAGTCCGTCTTATCGATACGCCCGTCCTT
ATTCTGGTCACACAGATCAAATCCGTACCTCAACTTCTCCACCTCCCTCC
CATGCTCCATCGTCAGCAACCACCGCAAGAAATCCCCGAGACTGATGACG
CCGTCCTTATCCTTATCAATCGTCGAAAACAAGACCCGAGGAAACTCGCT
CGTCACGCACCCACCCCCCACAGCACCCAGACACGCCTGGAATTCAGACG
CCTGTATCTGTCCGTCCCCCGCTGCCGGCGACCCATCCAGATTCGAAAAC
AGCTGCAATGCCTCCTCCTCCGCCCTCTCCACCTTCTCAATCCCCCATTT
CGCAACCAGCACCTCCCTTTCGTGCTTCAATAGTGTGAGATGTCTTTTCC
CCGAAAATTTTTCCTTCACCATCTGCATCGCCTTCTTCGCTGCTCCAGTG
CTGCTTCCATTTAATGTTCCCCCACCACTCCCACTGCTTCCACTGATAC
back to top

Coding sequence (CDS) from alignment at scaffold_1:963707..965005-

>mRNA_1564 ID=mRNA_1564|Name=jgi.p|Nanoce1779_2|572708|organism=Nannochloropsis oceanica|type=CDS|length=552bp|location=Sequence derived from alignment at scaffold_1:963707..965005- (Nannochloropsis oceanica)
ATGGTCTACCTCCCCCCCTTTTTCGCCCTGCATCCTGTCCTCTTGCCCTC
CCTCACCTCCCTCCTTCTCTCCCTCCTGCCCAACGTCCAGGCGACAAAAC
ACAGTATTTACGAACCGCTTCGCACAAACGTCATCACTTTGCAGGTTCAA
ACCCGTCAAAATCGAGAACGCGGTTTCTATCGTCGTCGTCAAGTCCGTCT
TATCGATACGCCCGTCCTTATTCTGGTCACACAGATCAAATCCGTACCTC
AACTTCTCCACCTCCCTCCCATGCTCCATCGTCAGCAACCACCGCAAGAA
ATCCCCGAGACTGATGACGCCGTCCTTATCCTTATCAATCGTCGAAAACA
AGACCCGAGGAAACTCGCTCGTCACGCACCCACCCCCCACAGCACCCAGA
CACGCCTGGAATTCAGACGCCTGTATCTGTCCGTCCCCCGCTGCCGGCGA
CCCATCCAGATTCGAAAACAGCTGCAATGCCTCCTCCTCCGCCCTCTCCA
CCTTCTCAATCCCCCATTTCGCAACCAGCACCTCCCTTTCGTGCTTCAAT
AG
back to top
Synonyms
Publications