jgi.p|Nanoce1779_2|572705, mRNA_1563 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|572705
Unique NamemRNA_1563
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length2136
Alignment locationscaffold_1:961541..963676 -

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Properties
Property NameValue
TranscriptId572791
TrackFilteredModels2
ProteinId572705
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:961541..963676 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572705gene_1563Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572705mRNA_1563-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1563CDS_1563Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1563 ID=mRNA_1563|Name=jgi.p|Nanoce1779_2|572705|organism=Nannochloropsis oceanica|type=mRNA|length=2136bp
CTTCTCCACTACCACCACAACTCACATTCGCCAGTCCTGCGAAAGCCCCC
GCAAGCCCTCGGACACTTCCTTGACTGACATCAAAATTAAAACTTCCCAT
ACTACATTGAGAGCCCGTCGGAGAAGTCAGTCCACCCACACTCCCGATGC
TCCCACATAAGCCTGTTGCGACATGGACTTTTCTGTCTACTTCAGCCAGC
TTTTGCTTCAGCAATAAAGCGCGCTGGCGGGATGCTTCTTGGTCGGGGCT
CAGGTCGGTGCTACCTGATTTTTTGTGTTCACTGGAGATCTGACTTAGAG
GCGGGAGACGGGAGGAGCAATCCTGCTCCTGTTGTAGGTGCCCTTGTTGA
TTCTGAGGGTCGGTATGGCTGTGGCCCCCAGAGGCACTGGTGCTGACGCT
ACTACTGCTGTCGGACGAGGTTGAAGGTTGATGTTCCCAGTGATGGAGAG
GGGGTGATTGAGAGGCTTCACCATCAGCTTCCCCCGCGCCCTCCGTCCCC
CCATCCCCTTTCTCCACCCCCAAACAACTATCATAATCTAAACCCACAGG
TGATAGACATGTCGATCGTTGCTGTCTCTCCTTTCCCCCTGCCTCGCGTT
CTTTTAATAATCGGTCCAGCTGCTGCAGCTGTTGCTGCTGCAAGGAAGAC
GACGACGGCGGCGGTAGTGTGAACGAAGAGGAAGAGGTGGAAGAAGGGGG
GGAGGAGGACGAGGAGGATACGTTGCGTGGGGAGGGACTAGGCATTTTTT
CTGGGGTGGAATCACAGCTGGAGGTAGAAGAGTGACGACGTACAGCACTG
GGGAGACCGCAGCTGGTGGGCGTGGGTTGGATTGGTGTGTGGGTGACAGG
GTCCATTGGGCTGCTACAAAAGGAGGTTGGCCTGCTGCTGCTGCTGCTAC
TGCTGTTGCTGCCACTGCTGCTGCTCCCTGTGCTGCTGGTGCTGCCTATG
GTACTGGTGCTGGCGGCGTTGGTGGAGGTGGGAGTCGGAGGTCGGCCGAG
ACTTCTGCTAATACTGTTGCCGTTTTTAAGTGTTTTGCTGCTTGTCTTGC
TGGTGCTACTACAGCTGCTATCCAAACTGTTATTGCCTCCGGTGCTGGCG
CTGCTGGCGCTGCTGGCGCTGCTGGGGCTGCTGCTCCTGCTTCCACCGGC
GCTGTCCAAGGAGTTGCGGTCCGTGTCCTTTCCCTTCCTCCAGGACAGGG
TCCTCCGTATCATAGCAGCTGCTGCTACAACTGCTCTTCCTCCTGTACTG
TGGGTTAGTCGTTGTGGGGAAAAGGGAAAATGAGGAGGACAAACTTGAGA
TGGCCAAAGCTTGGCTGGTAAGATGTTCCTGGAGAAACGGAATTTTAAAT
GTGCATGGGTCCTTGGCTTTGCTGCAGGTAGCATGGCTGGGATGTAGGAG
GGTGATACATGACGTTAAGGGAAACAATCAGATCTTGCGAGCGGACGTCG
CACAAAAATGGCCGCATGAAGTCAAGATATGGCCAAATGATTATGAAAAC
GTGTATTTCACATGGATGGCGACGTCGGGTTATGTATTATACGGTCAGGC
GGGGGTAGATCTAACGTCGATGATGCCCGCGTCGGGCAAAAATGACGGCT
GCACGCAGAGGACATCCCAGCTACCGGTTCTGACTGCGATAAACCGCAGT
CGAAGATGTGTCACCTGCAAGGGGGGACAACGCCTCTGTTAGCATGGTTG
GCCGGCTCGCAAGTGCTCAAGCTCTCTTGCATCGAAGCAGAAGTTGTTCT
CACAGCTCTGTGCGTCTTACACGCCTAAGCAACCACAAAAGCAACTCAGG
TACCCAAATATCTTGCTTGAGGGATCACTGCATCTGCCACTCATTTCCAG
GCCTCGGTGGTGCTCTGTGTGTGTTGTGATGTTCGAACATAGTCGGATGG
GGACAGGAGCGTGTCGACCGAAAAGGTGAAGCCTCGCTATCATGTGAAGG
GGGCAGAGTAGCGACACGTAAGCAATGAGATCACATGTATGGGGCCAACA
AAGTTGCCCCTCAGCGGTGGTATATATCCTTGGTCGAACAAGGAAAAGAT
AACGACAAGAAGGGCTATAGATCTTGTTATGAGGCATTACCTGCTGTCTG
CTTGCTGTCCCAGACAGGACCTGTCGATGAGTGACC
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protein sequence of jgi.p|Nanoce1779_2|572705

>mRNA_1563-protein ID=mRNA_1563-protein|Name=jgi.p|Nanoce1779_2|572705|organism=Nannochloropsis oceanica|type=polypeptide|length=131bp
MAKAWLVRCSWRNGILNVHGSLALLQVAWLGCRRVIHDVKGNNQILRADV
AQKWPHEVKIWPNDYENVYFTWMATSGYVLYGQAGVDLTSMMPASGKNDG
CTQRTSQLPVLTAINRSRRCVTCKGGQRLC*
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mRNA from alignment at scaffold_1:961541..963676-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1563 ID=mRNA_1563|Name=jgi.p|Nanoce1779_2|572705|organism=Nannochloropsis oceanica|type=mRNA|length=2136bp|location=Sequence derived from alignment at scaffold_1:961541..963676- (Nannochloropsis oceanica)
CTTCTCCACTACCACCACAACTCACATTCGCCAGTCCTGCGAAAGCCCCC
GCAAGCCCTCGGACACTTCCTTGACTGACATCAAAATTAAAACTTCCCAT
ACTACATTGAGAGCCCGTCGGAGAAGTCAGTCCACCCACACTCCCGATGC
TCCCACATAAGCCTGTTGCGACATGGACTTTTCTGTCTACTTCAGCCAGC
TTTTGCTTCAGCAATAAAGCGCGCTGGCGGGATGCTTCTTGGTCGGGGCT
CAGGTCGGTGCTACCTGATTTTTTGTGTTCACTGGAGATCTGACTTAGAG
GCGGGAGACGGGAGGAGCAATCCTGCTCCTGTTGTAGGTGCCCTTGTTGA
TTCTGAGGGTCGGTATGGCTGTGGCCCCCAGAGGCACTGGTGCTGACGCT
ACTACTGCTGTCGGACGAGGTTGAAGGTTGATGTTCCCAGTGATGGAGAG
GGGGTGATTGAGAGGCTTCACCATCAGCTTCCCCCGCGCCCTCCGTCCCC
CCATCCCCTTTCTCCACCCCCAAACAACTATCATAATCTAAACCCACAGG
TGATAGACATGTCGATCGTTGCTGTCTCTCCTTTCCCCCTGCCTCGCGTT
CTTTTAATAATCGGTCCAGCTGCTGCAGCTGTTGCTGCTGCAAGGAAGAC
GACGACGGCGGCGGTAGTGTGAACGAAGAGGAAGAGGTGGAAGAAGGGGG
GGAGGAGGACGAGGAGGATACGTTGCGTGGGGAGGGACTAGGCATTTTTT
CTGGGGTGGAATCACAGCTGGAGGTAGAAGAGTGACGACGTACAGCACTG
GGGAGACCGCAGCTGGTGGGCGTGGGTTGGATTGGTGTGTGGGTGACAGG
GTCCATTGGGCTGCTACAAAAGGAGGTTGGCCTGCTGCTGCTGCTGCTAC
TGCTGTTGCTGCCACTGCTGCTGCTCCCTGTGCTGCTGGTGCTGCCTATG
GTACTGGTGCTGGCGGCGTTGGTGGAGGTGGGAGTCGGAGGTCGGCCGAG
ACTTCTGCTAATACTGTTGCCGTTTTTAAGTGTTTTGCTGCTTGTCTTGC
TGGTGCTACTACAGCTGCTATCCAAACTGTTATTGCCTCCGGTGCTGGCG
CTGCTGGCGCTGCTGGCGCTGCTGGGGCTGCTGCTCCTGCTTCCACCGGC
GCTGTCCAAGGAGTTGCGGTCCGTGTCCTTTCCCTTCCTCCAGGACAGGG
TCCTCCGTATCATAGCAGCTGCTGCTACAACTGCTCTTCCTCCTGTACTG
TGGGTTAGTCGTTGTGGGGAAAAGGGAAAATGAGGAGGACAAACTTGAGA
TGGCCAAAGCTTGGCTGGTAAGATGTTCCTGGAGAAACGGAATTTTAAAT
GTGCATGGGTCCTTGGCTTTGCTGCAGGTAGCATGGCTGGGATGTAGGAG
GGTGATACATGACGTTAAGGGAAACAATCAGATCTTGCGAGCGGACGTCG
CACAAAAATGGCCGCATGAAGTCAAGATATGGCCAAATGATTATGAAAAC
GTGTATTTCACATGGATGGCGACGTCGGGTTATGTATTATACGGTCAGGC
GGGGGTAGATCTAACGTCGATGATGCCCGCGTCGGGCAAAAATGACGGCT
GCACGCAGAGGACATCCCAGCTACCGGTTCTGACTGCGATAAACCGCAGT
CGAAGATGTGTCACCTGCAAGGGGGGACAACGCCTCTGTTAGCATGGTTG
GCCGGCTCGCAAGTGCTCAAGCTCTCTTGCATCGAAGCAGAAGTTGTTCT
CACAGCTCTGTGCGTCTTACACGCCTAAGCAACCACAAAAGCAACTCAGG
TACCCAAATATCTTGCTTGAGGGATCACTGCATCTGCCACTCATTTCCAG
GCCTCGGTGGTGCTCTGTGTGTGTTGTGATGTTCGAACATAGTCGGATGG
GGACAGGAGCGTGTCGACCGAAAAGGTGAAGCCTCGCTATCATGTGAAGG
GGGCAGAGTAGCGACACGTAAGCAATGAGATCACATGTATGGGGCCAACA
AAGTTGCCCCTCAGCGGTGGTATATATCCTTGGTCGAACAAGGAAAAGAT
AACGACAAGAAGGGCTATAGATCTTGTTATGAGGCATTACCTGCTGTCTG
CTTGCTGTCCCAGACAGGACCTGTCGATGAGTGACC
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Coding sequence (CDS) from alignment at scaffold_1:961541..963676-

>mRNA_1563 ID=mRNA_1563|Name=jgi.p|Nanoce1779_2|572705|organism=Nannochloropsis oceanica|type=CDS|length=393bp|location=Sequence derived from alignment at scaffold_1:961541..963676- (Nannochloropsis oceanica)
ATGGCCAAAGCTTGGCTGGTAAGATGTTCCTGGAGAAACGGAATTTTAAA
TGTGCATGGGTCCTTGGCTTTGCTGCAGGTAGCATGGCTGGGATGTAGGA
GGGTGATACATGACGTTAAGGGAAACAATCAGATCTTGCGAGCGGACGTC
GCACAAAAATGGCCGCATGAAGTCAAGATATGGCCAAATGATTATGAAAA
CGTGTATTTCACATGGATGGCGACGTCGGGTTATGTATTATACGGTCAGG
CGGGGGTAGATCTAACGTCGATGATGCCCGCGTCGGGCAAAAATGACGGC
TGCACGCAGAGGACATCCCAGCTACCGGTTCTGACTGCGATAAACCGCAG
TCGAAGATGTGTCACCTGCAAGGGGGGACAACGCCTCTGTTAG
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Synonyms
Publications