jgi.p|Nanoce1779_2|572703, mRNA_1562 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|572703
Unique Name	mRNA_1562
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1113
Alignment location	scaffold_1:959110..960899 -

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Properties


Property Name	Value
TranscriptId	572789
Track	FilteredModels2
ProteinId	572703

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_1	supercontig	scaffold_1:959110..960899 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|572703	gene_1562	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|572703	mRNA_1562-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1562	CDS_1562	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_1:959110..960899-
coding sequence from alignment at scaffold_1:959110..960899-

mRNA sequence

>mRNA_1562 ID=mRNA_1562|Name=jgi.p|Nanoce1779_2|572703|organism=Nannochloropsis oceanica|type=mRNA|length=1113bp
ACAGCTTTGAAGACAAGATGGGATTCTCTTGGTTTCAAAAAGCCAAGGGC
GCGGTTTTTCCCAAGCTCGGCCCTATTGTCAATGCCGTCCATTTGCAGGG
GATGATTGCTGCACGCTCAGGACCCCGTGGCATGTCATTCGCCTCGCTCG
AGCAGCATCTAGAGCGCGCATTCAAAGGCATGGGCGTCCACACACCAGAT
GCCGTCGCTCTGGTAGTGAACTCTCCCGGTGGCAGCCCTGTGCAGAGTAA
TCTGATCGGACAGAAGATTCTGGCGCTGCAGGAGAAGCACAAAGTGCCCG
TCTGGTCGTTTGCGGAGGATGTTGCTGCCAGTGGTGGCTACTGGCTTCTC
GCGGCTGGGCAAGAGATCTACGCCGACAGGGCTAGTATTGTTGGCTCCAT
TGGAGTGGTTTCTGGAGGGTTTGGTTTGCATGCATTTTTAGAGCAGCATG
GTGTTGAACGAAGGCTGCACACGGCGGGGAAGTCCAAAGCACGGCTCGAT
CCGTTTCTGGCCGCTAAAGCGGAGGATGTGGCCCATTTGAAGGAGACGCT
GGGGGAGATCCATGAGGTGTTTAAAGACCATATTAAGGCCCGGCGGGGCA
GCAAGATTGCCGGGCACGAAGACGTGGTGTTTTCTGGGGATTTTTTCACC
GGCCAAAAGGGGATGGAACTCGGGCTGGTCGATGCCATCGGGAGCTTGCA
GTCCGTGGCGAGGGATAAGTTGGGGGAGAAAGTGAAGATAAATTACATTA
ATGCTCGGCCAAGGTTCCCTCTCCTTCCAGGGCTGGGCACGGCTATGAGC
TATGTGGGAGGAGGGGACGGTTCGTTTTCGTTGACTGCACGGCTGGTGGA
TGATATGGTGGGGGCAGTGGAGGAGAGGATGGAGGAGAGGCTGTGGCGAG
GTCGGGTCGGTCTGTGAGGATTTTCCACGGATGGGGGGGAGGGGAGATGG
ATTAAAATATAGATTGAGAAGGGTGGAGATAGATGAGGTTTACTGATACG
TCCGTGCTGCCCAGATTGTGGAGATGGTGGGGCGGACGGTGGATGTGGGA
TGTGCTACTGTAAAGCAGAAAATTGAAAGGGTGAGAGGGAAACTAGCAGC
ATCAGCAGTGGCA

protein sequence of jgi.p|Nanoce1779_2|572703

>mRNA_1562-protein ID=mRNA_1562-protein|Name=jgi.p|Nanoce1779_2|572703|organism=Nannochloropsis oceanica|type=polypeptide|length=300bp
MGFSWFQKAKGAVFPKLGPIVNAVHLQGMIAARSGPRGMSFASLEQHLER
AFKGMGVHTPDAVALVVNSPGGSPVQSNLIGQKILALQEKHKVPVWSFAE
DVAASGGYWLLAAGQEIYADRASIVGSIGVVSGGFGLHAFLEQHGVERRL
HTAGKSKARLDPFLAAKAEDVAHLKETLGEIHEVFKDHIKARRGSKIAGH
EDVVFSGDFFTGQKGMELGLVDAIGSLQSVARDKLGEKVKINYINARPRF
PLLPGLGTAMSYVGGGDGSFSLTARLVDDMVGAVEERMEERLWRGRVGL*

mRNA from alignment at scaffold_1:959110..960899-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1562 ID=mRNA_1562|Name=jgi.p|Nanoce1779_2|572703|organism=Nannochloropsis oceanica|type=mRNA|length=1790bp|location=Sequence derived from alignment at scaffold_1:959110..960899- (Nannochloropsis oceanica)
ACAGCTTTGAAGACAAGATGGGATTCTCTTGGTTTCAAAAAGCCAAGGGC
GCGGTTTTTCCCAAGCTCGGCCCTATTGTCAATGCCGTCCATTTGCAGGG
GATGATTGCTGCACGCTCAGGACCCCGTGGCATGTCATTCGCCTCGCTCG
AGCAGCATCTAGGTACGCCAAGGAAGAGGGGATAGGGGTCATAGAGCCAT
GTCGGTCTTGCTCCATGGGAGGCGACCCCTCTTTCTTTCTCTTTTCTATT
TCTTGTTTTTGGTCGCTTGTTCATTTTCTTTTCCTTGTTTTTTTTTTTTC
GGTTTCCTTGGAAAGTATGTCATCGCACAGCCATATGTGCTCAATCAAAC
ACGTATGCGTAGCCCTACTTACCCGCCACGCCCCACTCCCTTTCTCCCTC
TCTCCCTCCCTCCGTCCTAGAGCGCGCATTCAAAGGCATGGGCGTCCACA
CACCAGATGCCGTCGCTCTGGTAGTGAACTCTCCCGGTGGCAGCCCTGTG
CAGAGTAATCTGATCGGACAGAAGATTCTGGCGCTGCAGGAGAAGCACAA
AGTGCCCGTCTGGTCGTTTGCGGAGGTATGGAGGAGGGGAGGGGGGCAGG
GAGAGAGGGAGAGAGAGAGAGATGGATGTTCTTGACTCCCTCCATCCCCC
TGAGCGTTTCCCTCTCAATTTCAGTGTGGCTGCCACGTTTCGCCACTGGC
TTTCCATGGGGAGGAAAGATCTCCTTAATGATTTGACGGCTTCGTTGATG
CCACTTTTGAAACCGTTTTTTTCAATTTATCTTTTCCTCCCTCCCTCCTT
CCCTCCGTTCTTCCGTGCCTCCCTAAGGATGTTGCTGCCAGTGGTGGCTA
CTGGCTTCTCGCGGCTGGGCAAGAGATCTACGCCGACAGGGCTAGTATTG
TTGGCTCCATTGGAGTGGTTTCTGGAGGGTTTGGTTTGCATGCATTTTTA
GAGCAGCATGGTGTTGAACGAAGGCTGCACACGGCGGGGAAGTCCAAAGC
ACGGCTCGATCCGTTTCTGGCCGCTAAAGCGGAGGATGTGGCCCATTTGA
AGGAGACGCTGGGGGAGATCCATGAGGTAGGGGCGGAGAGAGAAAGGGAG
TGAGGGATTGTAGGACTGAGCATTAACCGTCGCGGGGCCGTCGAAAACGG
GCCTTGATCCGTGTTTCTTGTCAAGTCATTAGATACGGTACGACGTATTT
GACGATGGGCATGCATTTTACCCACCTGTTTGCCCCAGTACAGGTGTTTA
AAGACCATATTAAGGCCCGGCGGGGCAGCAAGATTGCCGGGCACGAAGAC
GTGGTGTTTTCTGGGGATTTTTTCACCGGCCAAAAGGGGATGGAACTCGG
GCTGGTCGATGCCATCGGGAGCTTGCAGTCCGTGGCGAGGGATAAGTTGG
GGGAGAAAGTGAAGATAAATTACATTAATGCTCGGCCAAGGTTCCCTCTC
CTTCCAGGGCTGGGCACGGCTATGAGCTATGTGGGAGGAGGGGACGGTTC
GTTTTCGTTGACTGCACGGCTGGTGGATGATATGGTGGGGGCAGTGGAGG
AGAGGATGGAGGAGAGGCTGTGGCGAGGTCGGGTCGGTCTGTGAGGATTT
TCCACGGATGGGGGGGAGGGGAGATGGATTAAAATATAGATTGAGAAGGG
TGGAGATAGATGAGGTTTACTGATACGTCCGTGCTGCCCAGATTGTGGAG
ATGGTGGGGCGGACGGTGGATGTGGGATGTGCTACTGTAAAGCAGAAAAT
TGAAAGGGTGAGAGGGAAACTAGCAGCATCAGCAGTGGCA

Coding sequence (CDS) from alignment at scaffold_1:959110..960899-

>mRNA_1562 ID=mRNA_1562|Name=jgi.p|Nanoce1779_2|572703|organism=Nannochloropsis oceanica|type=CDS|length=3600bp|location=Sequence derived from alignment at scaffold_1:959110..960899- (Nannochloropsis oceanica)
GTGTTTAAAGACCATATTAAGGCCCGGCGGGGCAGCAAGATTGCCGGGCA
CGAAGACGTGGTGTTTTCTGGGGATTTTTTCACCGGCCAAAAGGGGATGG
AACTCGGGCTGGTCGATGCCATCGGGAGCTTGCAGTCCGTGGCGAGGGAT
AAGTTGGGGGAGAAAGTGAAGATAAATTACATTAATGCTCGGCCAAGGTT
CCCTCTCCTTCCAGGGCTGGGCACGGCTATGAGCTATGTGGGAGGAGGGG
ACGGTTCGTTTTCGTTGACTGCACGGCTGGTGGATGATATGGTGGGGGCA
GTGGAGGAGAGGATGGAGGAGAGGCTGTGGCGAGGTCGGGTCGGTCTGTG
AGATGTTGCTGCCAGTGGTGGCTACTGGCTTCTCGCGGCTGGGCAAGAGA
TCTACGCCGACAGGGCTAGTATTGTTGGCTCCATTGGAGTGGTTTCTGGA
GGGTTTGGTTTGCATGCATTTTTAGAGCAGCATGGTGTTGAACGAAGGCT
GCACACGGCGGGGAAGTCCAAAGCACGGCTCGATCCGTTTCTGGCCGCTA
AAGCGGAGGATGTGGCCCATTTGAAGGAGACGCTGGGGGAGATCCATGAG
AGCGCGCATTCAAAGGCATGGGCGTCCACACACCAGATGCCGTCGCTCTG
GTAGTGAACTCTCCCGGTGGCAGCCCTGTGCAGAGTAATCTGATCGGACA
GAAGATTCTGGCGCTGCAGGAGAAGCACAAAGTGCCCGTCTGGTCGTTTG
CGGAGATGGGATTCTCTTGGTTTCAAAAAGCCAAGGGCGCGGTTTTTCCC
AAGCTCGGCCCTATTGTCAATGCCGTCCATTTGCAGGGGATGATTGCTGC
ACGCTCAGGACCCCGTGGCATGTCATTCGCCTCGCTCGAGCAGCATCTAG
GTGTTTAAAGACCATATTAAGGCCCGGCGGGGCAGCAAGATTGCCGGGCA
CGAAGACGTGGTGTTTTCTGGGGATTTTTTCACCGGCCAAAAGGGGATGG
AACTCGGGCTGGTCGATGCCATCGGGAGCTTGCAGTCCGTGGCGAGGGAT
AAGTTGGGGGAGAAAGTGAAGATAAATTACATTAATGCTCGGCCAAGGTT
CCCTCTCCTTCCAGGGCTGGGCACGGCTATGAGCTATGTGGGAGGAGGGG
ACGGTTCGTTTTCGTTGACTGCACGGCTGGTGGATGATATGGTGGGGGCA
GTGGAGGAGAGGATGGAGGAGAGGCTGTGGCGAGGTCGGGTCGGTCTGTG
AGATGTTGCTGCCAGTGGTGGCTACTGGCTTCTCGCGGCTGGGCAAGAGA
TCTACGCCGACAGGGCTAGTATTGTTGGCTCCATTGGAGTGGTTTCTGGA
GGGTTTGGTTTGCATGCATTTTTAGAGCAGCATGGTGTTGAACGAAGGCT
GCACACGGCGGGGAAGTCCAAAGCACGGCTCGATCCGTTTCTGGCCGCTA
AAGCGGAGGATGTGGCCCATTTGAAGGAGACGCTGGGGGAGATCCATGAG
AGCGCGCATTCAAAGGCATGGGCGTCCACACACCAGATGCCGTCGCTCTG
GTAGTGAACTCTCCCGGTGGCAGCCCTGTGCAGAGTAATCTGATCGGACA
GAAGATTCTGGCGCTGCAGGAGAAGCACAAAGTGCCCGTCTGGTCGTTTG
CGGAGATGGGATTCTCTTGGTTTCAAAAAGCCAAGGGCGCGGTTTTTCCC
AAGCTCGGCCCTATTGTCAATGCCGTCCATTTGCAGGGGATGATTGCTGC
ACGCTCAGGACCCCGTGGCATGTCATTCGCCTCGCTCGAGCAGCATCTAG
GTGTTTAAAGACCATATTAAGGCCCGGCGGGGCAGCAAGATTGCCGGGCA
CGAAGACGTGGTGTTTTCTGGGGATTTTTTCACCGGCCAAAAGGGGATGG
AACTCGGGCTGGTCGATGCCATCGGGAGCTTGCAGTCCGTGGCGAGGGAT
AAGTTGGGGGAGAAAGTGAAGATAAATTACATTAATGCTCGGCCAAGGTT
CCCTCTCCTTCCAGGGCTGGGCACGGCTATGAGCTATGTGGGAGGAGGGG
ACGGTTCGTTTTCGTTGACTGCACGGCTGGTGGATGATATGGTGGGGGCA
GTGGAGGAGAGGATGGAGGAGAGGCTGTGGCGAGGTCGGGTCGGTCTGTG
AGATGTTGCTGCCAGTGGTGGCTACTGGCTTCTCGCGGCTGGGCAAGAGA
TCTACGCCGACAGGGCTAGTATTGTTGGCTCCATTGGAGTGGTTTCTGGA
GGGTTTGGTTTGCATGCATTTTTAGAGCAGCATGGTGTTGAACGAAGGCT
GCACACGGCGGGGAAGTCCAAAGCACGGCTCGATCCGTTTCTGGCCGCTA
AAGCGGAGGATGTGGCCCATTTGAAGGAGACGCTGGGGGAGATCCATGAG
AGCGCGCATTCAAAGGCATGGGCGTCCACACACCAGATGCCGTCGCTCTG
GTAGTGAACTCTCCCGGTGGCAGCCCTGTGCAGAGTAATCTGATCGGACA
GAAGATTCTGGCGCTGCAGGAGAAGCACAAAGTGCCCGTCTGGTCGTTTG
CGGAGATGGGATTCTCTTGGTTTCAAAAAGCCAAGGGCGCGGTTTTTCCC
AAGCTCGGCCCTATTGTCAATGCCGTCCATTTGCAGGGGATGATTGCTGC
ACGCTCAGGACCCCGTGGCATGTCATTCGCCTCGCTCGAGCAGCATCTAG
GTGTTTAAAGACCATATTAAGGCCCGGCGGGGCAGCAAGATTGCCGGGCA
CGAAGACGTGGTGTTTTCTGGGGATTTTTTCACCGGCCAAAAGGGGATGG
AACTCGGGCTGGTCGATGCCATCGGGAGCTTGCAGTCCGTGGCGAGGGAT
AAGTTGGGGGAGAAAGTGAAGATAAATTACATTAATGCTCGGCCAAGGTT
CCCTCTCCTTCCAGGGCTGGGCACGGCTATGAGCTATGTGGGAGGAGGGG
ACGGTTCGTTTTCGTTGACTGCACGGCTGGTGGATGATATGGTGGGGGCA
GTGGAGGAGAGGATGGAGGAGAGGCTGTGGCGAGGTCGGGTCGGTCTGTG
AGATGTTGCTGCCAGTGGTGGCTACTGGCTTCTCGCGGCTGGGCAAGAGA
TCTACGCCGACAGGGCTAGTATTGTTGGCTCCATTGGAGTGGTTTCTGGA
GGGTTTGGTTTGCATGCATTTTTAGAGCAGCATGGTGTTGAACGAAGGCT
GCACACGGCGGGGAAGTCCAAAGCACGGCTCGATCCGTTTCTGGCCGCTA
AAGCGGAGGATGTGGCCCATTTGAAGGAGACGCTGGGGGAGATCCATGAG
AGCGCGCATTCAAAGGCATGGGCGTCCACACACCAGATGCCGTCGCTCTG
GTAGTGAACTCTCCCGGTGGCAGCCCTGTGCAGAGTAATCTGATCGGACA
GAAGATTCTGGCGCTGCAGGAGAAGCACAAAGTGCCCGTCTGGTCGTTTG
CGGAGATGGGATTCTCTTGGTTTCAAAAAGCCAAGGGCGCGGTTTTTCCC
AAGCTCGGCCCTATTGTCAATGCCGTCCATTTGCAGGGGATGATTGCTGC
ACGCTCAGGACCCCGTGGCATGTCATTCGCCTCGCTCGAGCAGCATCTAG

Synonyms

Publications