jgi.p|Nanoce1779_2|11480, mRNA_1561 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|11480
Unique Name	mRNA_1561
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1847
Alignment location	scaffold_1:956807..958886 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	11566
Track	FilteredModels2
ProteinId	11480

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_1	supercontig	scaffold_1:956807..958886 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|11480	gene_1561	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|11480	mRNA_1561-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1561	CDS_1561	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_1:956807..958886+
coding sequence from alignment at scaffold_1:956807..958886+

mRNA sequence

>mRNA_1561 ID=mRNA_1561|Name=jgi.p|Nanoce1779_2|11480|organism=Nannochloropsis oceanica|type=mRNA|length=1847bp
ATAGCCTACGCTGTGAAGCACCAGTCAAGGCAATATACCATGAGGTTCCT
TTGATGCGCTGCGCACTTAATGGTACGATGCATGAAAGGCTGCTAGACCT
CGAGGAAACGACGGGGGCAGTGTGAAGAAAGGGGATGATGATTTTTGTGT
TTCTTTGGTCATTTTATTTTTATGGGTATGTCCACACCCACCCACATCAC
CACAAATCGGTTCATATGTGTTGCTCTCTTGTGATCTGTGGCGTAGCAGG
CATTTGAAGGAAGGTGAAGCGACAAAAATGGTCGTTTTTCCTATTAAGGG
CAATGTTGCTATTTGACAGCTGGGAAGGAAGAGACCTTAAATACTAACGG
TAGTATTTATGGCGCTGCCCTGCTCTTAAGTAGGCAGCCCTTAAATGGAA
GCGCCGAATTCGCTATTTAAGGGCTAAAGATCCTTAAATAGCCTATTTAA
GGGTTTTGGGGAGAGTTGAACACCCCCCCTATTTTCTAACGGCTCTGATA
CTGCCGAAATCACCCCGCATAGGGGCTTGCTGAAAGTCTCCCCATTCTCC
CCCAAATGTTCCACCCACATGCGCTCATGACCCACTCCACCAACTACTAC
ATACCTCAAAAGGTCTGCTGTCTTCCTTCTCGCTGGAAGTAGCGAGTCCT
CTGTGTGCCCCGTAGCTTCACATTCCGGCAGTCGGAGTCATTTTCTCCTG
CTCGCTTCGTCAGCTCTCCATACACACATGGCGGCCGCATCGCGCGTCTT
CTGGAACAGCATGGCTGCGCTTCTCGTCCTGGCTTTCTTACTGGGCATCG
CTTCGGCTTCCTCGTCCCAAGCACCCCTCATCCGAAAACTCTCCCTCCTG
CTCACCTCCTCCCTGGGCCCGGAGCGCCTCGCCAATCCCCACTGTGCAGG
GGACCCCTTCTGCACATTTAACGATTGGGTCAACGCCTTTTTCTTCAGCG
ACTCGACCAAGGCAGGAACCATTGAACGTCTTGGCCCTGCTGGGGCTCAC
TACCTTTTGACTTACCTTCGGGACTTGCTGGCGGGCTCGGCGTTGTATTA
TGTAACTGCGGGGGTGTGGCATGTCTATATTTATCAGCTGTATGGTGATT
ATTTCTTCACTCAACAGGGTTTTGAAAAACCGAGCGCAGCGACCATCAAG
GATCAGATTCAGTTAGCCCAGGCGAGTATGTTTTTGTATGCGGCCTTGCC
GGTGTTGGCGGAGTGGTTTGTGGAGAAAGGGTGGACGTTGTGCTATTATA
ATATTGAGGACGTCGGAGGATGGCCCTATTATTTGGCTTTCACGTTGCTG
TACATGTCGATGGTGGAGGTGGGGGTCTATTGGATGCACAGGACGTTACA
CGAGAACAAGACTTTGTATAAATACATTCACGGACTCCACCACAAGTATA
ACAAGCCTAGTACACTCTCCCCTTGGGCCTCTGTGGCTTTCAACCCCATC
GACGGTATCTTGCAAGCATCGCCGTACGTTGTGTGTCTGTTTATTGTCCC
ATGCCATTACCTCACGCATGTGGCCTTGGTGTTTTTTACAGCCGTATGGG
CTACCAACATCCATGACGCGATGGACGGAGACACGGAGCCAGTAATGGGG
AGCAAGTACCACACCATGCATCACACGCACTACCATTACAATTTCGGGCA
ATTTTTTATCTTCGCCGATTGGATGTTTGGGACTTTGCGTGTGCCGGAGC
CGAGGGGGGCGAAGGCAGTTAGGAGACCGGAGGGAGGGAGGGCGGGGACG
GCGGCGACGCCTATGGCAGGAATGATGGGGGAGGGAGTTGTGAGCAGGGT
GCGGAGTAAGAAAGCGGAGTGAGAGGTGATTTGGTTGAGAGTGAAAA

protein sequence of jgi.p|Nanoce1779_2|11480

>mRNA_1561-protein ID=mRNA_1561-protein|Name=jgi.p|Nanoce1779_2|11480|organism=Nannochloropsis oceanica|type=polypeptide|length=365bp
MAAASRVFWNSMAALLVLAFLLGIASASSSQAPLIRKLSLLLTSSLGPER
LANPHCAGDPFCTFNDWVNAFFFSDSTKAGTIERLGPAGAHYLLTYLRDL
LAGSALYYVTAGVWHVYIYQLYGDYFFTQQGFEKPSAATIKDQIQLAQAS
MFLYAALPVLAEWFVEKGWTLCYYNIEDVGGWPYYLAFTLLYMSMVEVGV
YWMHRTLHENKTLYKYIHGLHHKYNKPSTLSPWASVAFNPIDGILQASPY
VVCLFIVPCHYLTHVALVFFTAVWATNIHDAMDGDTEPVMGSKYHTMHHT
HYHYNFGQFFIFADWMFGTLRVPEPRGAKAVRRPEGGRAGTAATPMAGMM
GEGVVSRVRSKKAE*

mRNA from alignment at scaffold_1:956807..958886+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1561 ID=mRNA_1561|Name=jgi.p|Nanoce1779_2|11480|organism=Nannochloropsis oceanica|type=mRNA|length=2080bp|location=Sequence derived from alignment at scaffold_1:956807..958886+ (Nannochloropsis oceanica)
ATAGCCTACGCTGTGAAGCACCAGTCAAGGCAATATACCATGAGGTTCCT
TTGATGCGCTGCGCACTTAATGGTACGATGCATGAAAGGCTGCTAGACCT
CGAGGAAACGACGGGGGCAGTGTGAAGAAAGGGGATGATGATTTTTGTGT
TTCTTTGGTCATTTTATTTTTATGGGTATGTCCACACCCACCCACATCAC
CACAAATCGGTTCATATGTGTTGCTCTCTTGTGATCTGTGGCGTAGCAGG
CATTTGAAGGAAGGTGAAGCGACAAAAATGGTCGTTTTTCCTATTAAGGG
CAATGTTGCTATTTGACAGCTGGGAAGGAAGAGACCTTAAATACTAACGG
TAGTATTTATGGCGCTGCCCTGCTCTTAAGTAGGCAGCCCTTAAATGGAA
GCGCCGAATTCGCTATTTAAGGGCTAAAGATCCTTAAATAGCCTATTTAA
GGGTTTTGGGGAGAGTTGAACACCCCCCCTATTTTCTAACGGCTCTGATA
CTGCCGAAATCACCCCGCATAGGGGCTTGCTGAAAGTCTCCCCATTCTCC
CCCAAATGTTCCACCCACATGCGCTCATGACCCACTCCACCAACTACTAC
ATACCTCAAAAGGTCTGCTGTCTTCCTTCTCGCTGGAAGTAGCGAGTCCT
CTGTGTGCCCCGTAGCTTCACATTCCGGCAGTCGGAGTCATTTTCTCCTG
CTCGCTTCGTCAGCTCTCCATACACACATGGCGGCCGCATCGCGCGTCTT
CTGGAACAGGTACGCAGGAAAGGAGTATCACACTGGATGCCCTAGCATTT
TTTTCAAGCGTTCGTCACGGTACGGGGCGTGGTTGAGGCTCTGGAATGTG
AGGTTTTTTATTACTGTTTCTCTCTTCTCCCCCGTCCTCGCTTTCACTTG
AGTGCACCACACGCTTCACAAAGACATGCCCAGCATTTATCACACACTCA
CGCTCTCTCAAACCCATCATTTCAAACTCTCACGGCACATAGCATGGCTG
CGCTTCTCGTCCTGGCTTTCTTACTGGGCATCGCTTCGGCTTCCTCGTCC
CAAGCACCCCTCATCCGAAAACTCTCCCTCCTGCTCACCTCCTCCCTGGG
CCCGGAGCGCCTCGCCAATCCCCACTGTGCAGGGGACCCCTTCTGCACAT
TTAACGATTGGGTCAACGCCTTTTTCTTCAGCGACTCGACCAAGGCAGGA
ACCATTGAACGTCTTGGCCCTGCTGGGGCTCACTACCTTTTGACTTACCT
TCGGGACTTGCTGGCGGGCTCGGCGTTGTATTATGTAACTGCGGGGGTGT
GGCATGTCTATATTTATCAGCTGTATGGTGATTATTTCTTCACTCAACAG
GGTTTTGAAAAACCGAGCGCAGCGACCATCAAGGATCAGATTCAGTTAGC
CCAGGCGAGTATGTTTTTGTATGCGGCCTTGCCGGTGTTGGCGGAGTGGT
TTGTGGAGAAAGGGTGGACGTTGTGCTATTATAATATTGAGGACGTCGGA
GGATGGCCCTATTATTTGGCTTTCACGTTGCTGTACATGTCGATGGTGGA
GGTGGGGGTCTATTGGATGCACAGGACGTTACACGAGAACAAGACTTTGT
ATAAATACATTCACGGACTCCACCACAAGTATAACAAGCCTAGTACACTC
TCCCCTTGGGCCTCTGTGGCTTTCAACCCCATCGACGGTATCTTGCAAGC
ATCGCCGTACGTTGTGTGTCTGTTTATTGTCCCATGCCATTACCTCACGC
ATGTGGCCTTGGTGTTTTTTACAGCCGTATGGGCTACCAACATCCATGAC
GCGATGGACGGAGACACGGAGCCAGTAATGGGGAGCAAGTACCACACCAT
GCATCACACGCACTACCATTACAATTTCGGGCAATTTTTTATCTTCGCCG
ATTGGATGTTTGGGACTTTGCGTGTGCCGGAGCCGAGGGGGGCGAAGGCA
GTTAGGAGACCGGAGGGAGGGAGGGCGGGGACGGCGGCGACGCCTATGGC
AGGAATGATGGGGGAGGGAGTTGTGAGCAGGGTGCGGAGTAAGAAAGCGG
AGTGAGAGGTGATTTGGTTGAGAGTGAAAA

Coding sequence (CDS) from alignment at scaffold_1:956807..958886+

>mRNA_1561 ID=mRNA_1561|Name=jgi.p|Nanoce1779_2|11480|organism=Nannochloropsis oceanica|type=CDS|length=2190bp|location=Sequence derived from alignment at scaffold_1:956807..958886+ (Nannochloropsis oceanica)
ATGGCGGCCGCATCGCGCGTCTTCTGGAACAGCATGGCTGCGCTTCTCGT
CCTGGCTTTCTTACTGGGCATCGCTTCGGCTTCCTCGTCCCAAGCACCCC
TCATCCGAAAACTCTCCCTCCTGCTCACCTCCTCCCTGGGCCCGGAGCGC
CTCGCCAATCCCCACTGTGCAGGGGACCCCTTCTGCACATTTAACGATTG
GGTCAACGCCTTTTTCTTCAGCGACTCGACCAAGGCAGGAACCATTGAAC
GTCTTGGCCCTGCTGGGGCTCACTACCTTTTGACTTACCTTCGGGACTTG
CTGGCGGGCTCGGCGTTGTATTATGTAACTGCGGGGGTGTGGCATGTCTA
TATTTATCAGCTGTATGGTGATTATTTCTTCACTCAACAGGGTTTTGAAA
AACCGAGCGCAGCGACCATCAAGGATCAGATTCAGTTAGCCCAGGCGAGT
ATGTTTTTGTATGCGGCCTTGCCGGTGTTGGCGGAGTGGTTTGTGGAGAA
AGGGTGGACGTTGTGCTATTATAATATTGAGGACGTCGGAGGATGGCCCT
ATTATTTGGCTTTCACGTTGCTGTACATGTCGATGGTGGAGGTGGGGGTC
TATTGGATGCACAGGACGTTACACGAGAACAAGACTTTGTATAAATACAT
TCACGGACTCCACCACAAGTATAACAAGCCTAGTACACTCTCCCCTTGGG
CCTCTGTGGCTTTCAACCCCATCGACGGTATCTTGCAAGCATCGCCGTAC
GTTGTGTGTCTGTTTATTGTCCCATGCCATTACCTCACGCATGTGGCCTT
GGTGTTTTTTACAGCCGTATGGGCTACCAACATCCATGACGCGATGGACG
GAGACACGGAGCCAGTAATGGGGAGCAAGTACCACACCATGCATCACACG
CACTACCATTACAATTTCGGGCAATTTTTTATCTTCGCCGATTGGATGTT
TGGGACTTTGCGTGTGCCGGAGCCGAGGGGGGCGAAGGCAGTTAGGAGAC
CGGAGGGAGGGAGGGCGGGGACGGCGGCGACGCCTATGGCAGGAATGATG
GGGGAGGGAGTTGTGAGCAGGGTGCGGAGTAAGAAAGCGGAGTGAATGGC
GGCCGCATCGCGCGTCTTCTGGAACAGCATGGCTGCGCTTCTCGTCCTGG
CTTTCTTACTGGGCATCGCTTCGGCTTCCTCGTCCCAAGCACCCCTCATC
CGAAAACTCTCCCTCCTGCTCACCTCCTCCCTGGGCCCGGAGCGCCTCGC
CAATCCCCACTGTGCAGGGGACCCCTTCTGCACATTTAACGATTGGGTCA
ACGCCTTTTTCTTCAGCGACTCGACCAAGGCAGGAACCATTGAACGTCTT
GGCCCTGCTGGGGCTCACTACCTTTTGACTTACCTTCGGGACTTGCTGGC
GGGCTCGGCGTTGTATTATGTAACTGCGGGGGTGTGGCATGTCTATATTT
ATCAGCTGTATGGTGATTATTTCTTCACTCAACAGGGTTTTGAAAAACCG
AGCGCAGCGACCATCAAGGATCAGATTCAGTTAGCCCAGGCGAGTATGTT
TTTGTATGCGGCCTTGCCGGTGTTGGCGGAGTGGTTTGTGGAGAAAGGGT
GGACGTTGTGCTATTATAATATTGAGGACGTCGGAGGATGGCCCTATTAT
TTGGCTTTCACGTTGCTGTACATGTCGATGGTGGAGGTGGGGGTCTATTG
GATGCACAGGACGTTACACGAGAACAAGACTTTGTATAAATACATTCACG
GACTCCACCACAAGTATAACAAGCCTAGTACACTCTCCCCTTGGGCCTCT
GTGGCTTTCAACCCCATCGACGGTATCTTGCAAGCATCGCCGTACGTTGT
GTGTCTGTTTATTGTCCCATGCCATTACCTCACGCATGTGGCCTTGGTGT
TTTTTACAGCCGTATGGGCTACCAACATCCATGACGCGATGGACGGAGAC
ACGGAGCCAGTAATGGGGAGCAAGTACCACACCATGCATCACACGCACTA
CCATTACAATTTCGGGCAATTTTTTATCTTCGCCGATTGGATGTTTGGGA
CTTTGCGTGTGCCGGAGCCGAGGGGGGCGAAGGCAGTTAGGAGACCGGAG
GGAGGGAGGGCGGGGACGGCGGCGACGCCTATGGCAGGAATGATGGGGGA
GGGAGTTGTGAGCAGGGTGCGGAGTAAGAAAGCGGAGTGA

Synonyms

Publications