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Properties
| Property Name | Value |
|---|
| TranscriptId | 549465 |
| Track | FilteredModels2 |
| ProteinId | 549379 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_1 | supercontig | scaffold_1:950558..952872 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_1560 ID=mRNA_1560|Name=jgi.p|Nanoce1779_2|549379|organism=Nannochloropsis oceanica|type=mRNA|length=2117bp
GGGCCAATTAAGGGGAGGGCTGCTTCATTTTCGTTTGAAATCGCTCCTGC
TTGGGTAACGGACATACCATCGCTTTAAAGATGACTCCCACCGCCATACC
GTCCAAAATTTACAAGACCTGGACAACATCTGAGCACAGGGCGTGCAAAC
GGGGTGATTCCACTGTCTGAGTGTCAAGAGGTAGAGTTCGACGGATCGTG
TTGTGACGGAAGTGTGTCTAAACCCGTCGTCATGCCATACCCACAAAAAG
CTACATCACCACCACCACTATACGCGACCCACAAGACGGACGGGGACGAT
GGCCACAAAGACATCATCAAATCGTGCAGGTCGGCTTAGGTATGTGATTT
TGGGCGGGGGTATTGCCGGCTGCACGGCTGCAGAGGAGCTGCTTGCCATG
CTGCCGCCGGATTGCGCCGAGGTGACCATGGTCACGGCTACCCCCATCGT
CAAGCAGGTGGGCAAGGTGGTGCAAGTCACGCGGAACTTGGAGGAGATGA
AGATTATAGAACGGGACGCCGATGCCTTCGGGCAGGACCATGCCAACTTG
CGAGTGGTGCAAGCGCGCGTCACGGGGTTGGACGTGAGCAAACATACGGT
GGAATGCGAAGGGGGGATCTGCTTGCCCTTTGACCGGTGCTTGATCTGCA
CGGGCGCTGTGCCAAAAGTGCATGCGACGCACGAGCACGTAGTTGGCATT
CGTGACACGGAAAGCGTGCAGGACTTGGCCAGGCGCCTGGAGACGGCGCG
ACGGGTGCTGGTGCTGGGCAATGGTGGAATTGCATTAGAGCTTGTGCATG
AGGTCACAGGCTGCGAACTCGTGTGGGCCGTTAAGGATCCGTACGTAGGC
AACACCTTTTTTGACCACACGGCATCGGGATTCGTGCTGCCGGAGTTGGA
GAAGCGGCGGCCGATCCGCATTATCGACAACGAGTACACCAAAGGCGGTA
CTGACGGAAAAAATGATCCGAAGAAACAGCAGCAGCAGCAGCAGCTGCAA
CTACCACTACTACTACAACAACAGTCAGCGCACGTCAAGGAGCCACCAGC
TGTCGAGTCCATCCAAGCCAGTCCCACCGGCGGTGCCTTGGGTCCAGATT
GGACAGTCGGTCTATCAACCGGCACCGGCACACCCGCCGCATGCAACCCA
GAGGCCAACATAAAGCCGCCCCAGGCTCCCTCTGGAAAGTTGCTCACCAT
CCTCTTCCGTGCCGAGATCGAAGATTTGTATGAATCACCCCCTGCTCCTT
CCTCCACAGGAAATCAAGACGAAGACTGGGTGCTGTGGGTACATCTGACG
AACGGACAGGTTTGGGGGTGTGATTTCGTGGTGTCCGCTACCGGGGTTAT
GCCATCGGTTAGTTTTCTTGGTCCTGAATTTGAGCGAGGGGACGATGGGG
GTGTGTTGGTCAATGAAAATATGCAAACGACGGCGAGTAAGGATGTGTAT
GCGGCGGGGGACTGCTGCTCCATGACTTGGCCGGAGAGTGAGGTTTGGTT
TCAGATGAGACTGTGGACACAAGCGAGGGCCATGGCGAGGTATGCGGCGA
GGTGTATGGCGGGATTAGTGGATGAGCTAGGGTCAGGGTTTGCTTTTGAG
CTATTTGCGCATATGACGAGGTTTTTCGGGTTTAAGGTGGCGTTGTTGGG
CTGTTTCAATGCCCAGCTATTGAAGGATGAGGAGCAACGGCGGTTGATTT
TGACACGGTTGACGCCGGGGGTGGAGTATATCAAGGTGTTGCTGGTAGGT
GGAAGGGTGAAGGGTGCGATGCTGGTGGGAGAGAGCACAGAGCTGGCGGA
GACGTTCGAAAATTTGATTTTGAATGAGCTGGACGTAAGTGCTTTTGGGG
TGGGGTTGTTGGATCCGGATGTGGATATCGATGATTATTTTGATTAGTGT
ATATGTAGAGGGGATGGAGGTAAGGAAGGGAGGTGGAGGGTAGGAGGAAG
GGAAAAGAGGATGAGGATTCTTTTTTTATGGAAGTATGAAAGTACACGTG
AAAACGTATACAAGTCAAGACATTGGCAAGACTCAGTGCAGATAAAGAAA
TACGCAATGCACACATGGTAACAATGACAACAACAATTACTCAAAGCAGG
TAGATGGTGGATTCGCG back to topprotein sequence of jgi.p|Nanoce1779_2|549379 >mRNA_1560-protein ID=mRNA_1560-protein|Name=jgi.p|Nanoce1779_2|549379|organism=Nannochloropsis oceanica|type=polypeptide|length=533bp
MATKTSSNRAGRLRYVILGGGIAGCTAAEELLAMLPPDCAEVTMVTATPI
VKQVGKVVQVTRNLEEMKIIERDADAFGQDHANLRVVQARVTGLDVSKHT
VECEGGICLPFDRCLICTGAVPKVHATHEHVVGIRDTESVQDLARRLETA
RRVLVLGNGGIALELVHEVTGCELVWAVKDPYVGNTFFDHTASGFVLPEL
EKRRPIRIIDNEYTKGGTDGKNDPKKQQQQQQLQLPLLLQQQSAHVKEPP
AVESIQASPTGGALGPDWTVGLSTGTGTPAACNPEANIKPPQAPSGKLLT
ILFRAEIEDLYESPPAPSSTGNQDEDWVLWVHLTNGQVWGCDFVVSATGV
MPSVSFLGPEFERGDDGGVLVNENMQTTASKDVYAAGDCCSMTWPESEVW
FQMRLWTQARAMARYAARCMAGLVDELGSGFAFELFAHMTRFFGFKVALL
GCFNAQLLKDEEQRRLILTRLTPGVEYIKVLLVGGRVKGAMLVGESTELA
ETFENLILNELDVSAFGVGLLDPDVDIDDYFD* back to topmRNA from alignment at scaffold_1:950558..952872- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_1560 ID=mRNA_1560|Name=jgi.p|Nanoce1779_2|549379|organism=Nannochloropsis oceanica|type=mRNA|length=2315bp|location=Sequence derived from alignment at scaffold_1:950558..952872- (Nannochloropsis oceanica)
GGGCCAATTAAGGGGAGGGCTGCTTCATTTTCGTTTGAAATCGCTCCTGC
TTGGGTAACGGACATACCATCGCTTTAAAGATGACTCCCACCGCCATACC
GTCCAAAATTTACAAGACCTGGACAACATCTGAGCACAGGGCGTGCAAAC
GGGGTGATTCCACTGTCTGAGTGTCAAGAGGTAGAGTTCGACGGATCGTG
TTGTGACGGAAGTGTGTCTAAACCCGTCGTCATGCCATACCCACAAAAAG
CTACATCACCACCACCACTATACGCGACCCACAAGACGGACGGGGACGAT
GGCCACAAAGACATCATCAAATCGTGCAGGTCGGCTTAGGTATGTGATTT
TGGGCGGGGGTATTGCCGGCTGCACGGCTGCAGAGGAGCTGCTTGCCATG
CTGCCGCCGGATTGCGCCGAGGTGACCATGGTCACGGCTACCCCCATCGT
CAAGCAGGTGGGCAAGGTGGTGCAAGTCACGCGGAACTTGGAGGAGATGA
AGATTATAGAACGGGACGCCGATGCCTTCGGGCAGGACCATGCCAACTTG
CGAGTGGTGCAAGCGCGCGTCACGGGGTTGGACGTGAGCAAACATACGGT
GGAATGCGAAGGGGGGATCTGCTTGCCCTTTGACCGGTGCTTGATCTGCA
CGGGCGCTGTGCCAAAAGTGCATGCGACGCACGAGCACGTAGTTGGCATT
CGTGACACGGAAAGCGTGCAGGACTTGGCCAGGCGCCTGGAGACGGCGCG
ACGGGTGCTGGTGCTGGGCAATGGTGGAATTGCATTAGAGCTTGTGCATG
AGGTCACAGGCTGCGAACTCGTGTGGGCCGTTAAGGATCCGTACGTAGGC
AACACCTTTTTTGACCACACGGCATCGGGATTCGTGCTGCCGGAGTTGGA
GAAGCGGCGGCCGATCCGCATTATCGACAACGAGTACACCAAAGGCGGTA
CTGACGGAAAAAATGATCCGAAGAAACAGCAGCAGCAGCAGCAGCTGCAA
CTACCACTACTACTACAACAACAGTCAGCGCACGTCAAGGAGCCACCAGC
TGTCGAGTCCATCCAAGCCAGTCCCACCGGCGGTGCCTTGGGTCCAGATT
GGACAGTCGGTCTATCAACCGGCACCGGCACACCCGCCGCATGCAACCCA
GAGGCCAACATAAAGCCGCCCCAGGCTCCCTCTGGAAAGTTGCTCACCAT
CCTCTTCCGTGCCGAGATCGAAGATTTGTATGAATCACCCCCTGCTCCTT
CCTCCACAGGAAATCAAGACGAAGACTGGGTGCTGTGGGTACATCTGACG
AACGGACAGGTTTGGGGGTGTGATTTCGTGGTGTCCGCTACCGGGGTTAT
GCCATCGGTTAGTTTTCTTGGTCCTGAATTTGAGCGAGGGGACGATGGGG
GTGTGTTGGTCAATGAAAATATGCAAACGACGGCGAGTAAGGATGTGTAT
GCGGCGGGGGACTGCTGCTCCATGACTTGGCCGGAGAGTGAGGTTTGGTT
TCAGATGAGACTGTGGACACAAGCGAGGGCCATGGCGAGGTATGCGGCGA
GGTGTATGGCGGGATTAGTGGATGAGCTAGGGTCAGGGTTTGCTTTTGAG
CTATTTGCGCATATGACGAGGTTTTTCGGGTTTAAGGTGGCGTTGTTGGG
CTGTTTCAATGCCCAGCTATTGAAGGATGAGGAGCAACGGCGGTTGGTGC
AAGAGATACAGGTGATGCCTTCTTTGACGATGGGAGGGAGGGAGGAAAGG
GTGAAGGAAGATGGGGGCGATAGAAGAGGGGAGGATGAGTCAATGATGGG
TGTATTGGCGCCATCGATGGAAAGGGGGAGGAAAGGTGGAAAGGAGGAGG
GGGATGCTATAGCAAAAGAGACGATGTCGAAAGACAAAGTTGAGATTTTG
ACACGGTTGACGCCGGGGGTGGAGTATATCAAGGTGTTGCTGGTAGGTGG
AAGGGTGAAGGGTGCGATGCTGGTGGGAGAGAGCACAGAGCTGGCGGAGA
CGTTCGAAAATTTGATTTTGAATGAGCTGGACGTAAGTGCTTTTGGGGTG
GGGTTGTTGGATCCGGATGTGGATATCGATGATTATTTTGATTAGTGTAT
ATGTAGAGGGGATGGAGGTAAGGAAGGGAGGTGGAGGGTAGGAGGAAGGG
AAAAGAGGATGAGGATTCTTTTTTTATGGAAGTATGAAAGTACACGTGAA
AACGTATACAAGTCAAGACATTGGCAAGACTCAGTGCAGATAAAGAAATA
CGCAATGCACACATGGTAACAATGACAACAACAATTACTCAAAGCAGGTA
GATGGTGGATTCGCG back to topCoding sequence (CDS) from alignment at scaffold_1:950558..952872- >mRNA_1560 ID=mRNA_1560|Name=jgi.p|Nanoce1779_2|549379|organism=Nannochloropsis oceanica|type=CDS|length=3198bp|location=Sequence derived from alignment at scaffold_1:950558..952872- (Nannochloropsis oceanica)
ATTTTGACACGGTTGACGCCGGGGGTGGAGTATATCAAGGTGTTGCTGGT
AGGTGGAAGGGTGAAGGGTGCGATGCTGGTGGGAGAGAGCACAGAGCTGG
CGGAGACGTTCGAAAATTTGATTTTGAATGAGCTGGACGTAAGTGCTTTT
GGGGTGGGGTTGTTGGATCCGGATGTGGATATCGATGATTATTTTGATTA
GATGGCCACAAAGACATCATCAAATCGTGCAGGTCGGCTTAGGTATGTGA
TTTTGGGCGGGGGTATTGCCGGCTGCACGGCTGCAGAGGAGCTGCTTGCC
ATGCTGCCGCCGGATTGCGCCGAGGTGACCATGGTCACGGCTACCCCCAT
CGTCAAGCAGGTGGGCAAGGTGGTGCAAGTCACGCGGAACTTGGAGGAGA
TGAAGATTATAGAACGGGACGCCGATGCCTTCGGGCAGGACCATGCCAAC
TTGCGAGTGGTGCAAGCGCGCGTCACGGGGTTGGACGTGAGCAAACATAC
GGTGGAATGCGAAGGGGGGATCTGCTTGCCCTTTGACCGGTGCTTGATCT
GCACGGGCGCTGTGCCAAAAGTGCATGCGACGCACGAGCACGTAGTTGGC
ATTCGTGACACGGAAAGCGTGCAGGACTTGGCCAGGCGCCTGGAGACGGC
GCGACGGGTGCTGGTGCTGGGCAATGGTGGAATTGCATTAGAGCTTGTGC
ATGAGGTCACAGGCTGCGAACTCGTGTGGGCCGTTAAGGATCCGTACGTA
GGCAACACCTTTTTTGACCACACGGCATCGGGATTCGTGCTGCCGGAGTT
GGAGAAGCGGCGGCCGATCCGCATTATCGACAACGAGTACACCAAAGGCG
GTACTGACGGAAAAAATGATCCGAAGAAACAGCAGCAGCAGCAGCAGCTG
CAACTACCACTACTACTACAACAACAGTCAGCGCACGTCAAGGAGCCACC
AGCTGTCGAGTCCATCCAAGCCAGTCCCACCGGCGGTGCCTTGGGTCCAG
ATTGGACAGTCGGTCTATCAACCGGCACCGGCACACCCGCCGCATGCAAC
CCAGAGGCCAACATAAAGCCGCCCCAGGCTCCCTCTGGAAAGTTGCTCAC
CATCCTCTTCCGTGCCGAGATCGAAGATTTGTATGAATCACCCCCTGCTC
CTTCCTCCACAGGAAATCAAGACGAAGACTGGGTGCTGTGGGTACATCTG
ACGAACGGACAGGTTTGGGGGTGTGATTTCGTGGTGTCCGCTACCGGGGT
TATGCCATCGGTTAGTTTTCTTGGTCCTGAATTTGAGCGAGGGGACGATG
GGGGTGTGTTGGTCAATGAAAATATGCAAACGACGGCGAGTAAGGATGTG
TATGCGGCGGGGGACTGCTGCTCCATGACTTGGCCGGAGAGTGAGGTTTG
GTTTCAGATGAGACTGTGGACACAAGCGAGGGCCATGGCGAGGTATGCGG
CGAGGTGTATGGCGGGATTAGTGGATGAGCTAGGGTCAGGGTTTGCTTTT
GAGCTATTTGCGCATATGACGAGGTTTTTCGGGTTTAAGGTGGCGTTGTT
GGGCTGTTTCAATGCCCAGCTATTGAAGGATGAGGAGCAACGGCGGTTGA
TTTTGACACGGTTGACGCCGGGGGTGGAGTATATCAAGGTGTTGCTGGTA
GGTGGAAGGGTGAAGGGTGCGATGCTGGTGGGAGAGAGCACAGAGCTGGC
GGAGACGTTCGAAAATTTGATTTTGAATGAGCTGGACGTAAGTGCTTTTG
GGGTGGGGTTGTTGGATCCGGATGTGGATATCGATGATTATTTTGATTAG
ATGGCCACAAAGACATCATCAAATCGTGCAGGTCGGCTTAGGTATGTGAT
TTTGGGCGGGGGTATTGCCGGCTGCACGGCTGCAGAGGAGCTGCTTGCCA
TGCTGCCGCCGGATTGCGCCGAGGTGACCATGGTCACGGCTACCCCCATC
GTCAAGCAGGTGGGCAAGGTGGTGCAAGTCACGCGGAACTTGGAGGAGAT
GAAGATTATAGAACGGGACGCCGATGCCTTCGGGCAGGACCATGCCAACT
TGCGAGTGGTGCAAGCGCGCGTCACGGGGTTGGACGTGAGCAAACATACG
GTGGAATGCGAAGGGGGGATCTGCTTGCCCTTTGACCGGTGCTTGATCTG
CACGGGCGCTGTGCCAAAAGTGCATGCGACGCACGAGCACGTAGTTGGCA
TTCGTGACACGGAAAGCGTGCAGGACTTGGCCAGGCGCCTGGAGACGGCG
CGACGGGTGCTGGTGCTGGGCAATGGTGGAATTGCATTAGAGCTTGTGCA
TGAGGTCACAGGCTGCGAACTCGTGTGGGCCGTTAAGGATCCGTACGTAG
GCAACACCTTTTTTGACCACACGGCATCGGGATTCGTGCTGCCGGAGTTG
GAGAAGCGGCGGCCGATCCGCATTATCGACAACGAGTACACCAAAGGCGG
TACTGACGGAAAAAATGATCCGAAGAAACAGCAGCAGCAGCAGCAGCTGC
AACTACCACTACTACTACAACAACAGTCAGCGCACGTCAAGGAGCCACCA
GCTGTCGAGTCCATCCAAGCCAGTCCCACCGGCGGTGCCTTGGGTCCAGA
TTGGACAGTCGGTCTATCAACCGGCACCGGCACACCCGCCGCATGCAACC
CAGAGGCCAACATAAAGCCGCCCCAGGCTCCCTCTGGAAAGTTGCTCACC
ATCCTCTTCCGTGCCGAGATCGAAGATTTGTATGAATCACCCCCTGCTCC
TTCCTCCACAGGAAATCAAGACGAAGACTGGGTGCTGTGGGTACATCTGA
CGAACGGACAGGTTTGGGGGTGTGATTTCGTGGTGTCCGCTACCGGGGTT
ATGCCATCGGTTAGTTTTCTTGGTCCTGAATTTGAGCGAGGGGACGATGG
GGGTGTGTTGGTCAATGAAAATATGCAAACGACGGCGAGTAAGGATGTGT
ATGCGGCGGGGGACTGCTGCTCCATGACTTGGCCGGAGAGTGAGGTTTGG
TTTCAGATGAGACTGTGGACACAAGCGAGGGCCATGGCGAGGTATGCGGC
GAGGTGTATGGCGGGATTAGTGGATGAGCTAGGGTCAGGGTTTGCTTTTG
AGCTATTTGCGCATATGACGAGGTTTTTCGGGTTTAAGGTGGCGTTGTTG
GGCTGTTTCAATGCCCAGCTATTGAAGGATGAGGAGCAACGGCGGTTG back to top
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