jgi.p|Nanoce1779_2|576391, mRNA_156 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|576391
Unique Name	mRNA_156
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2119
Alignment location	scaffold_3:401561..403679 -

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Properties


Property Name	Value
TranscriptId	576477
Track	FilteredModels2
ProteinId	576391

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:401561..403679 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|576391	gene_156	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|576391	mRNA_156-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_156	CDS_156	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:401561..403679-
coding sequence from alignment at scaffold_3:401561..403679-

mRNA sequence

>mRNA_156 ID=mRNA_156|Name=jgi.p|Nanoce1779_2|576391|organism=Nannochloropsis oceanica|type=mRNA|length=2119bp
ACAGGCCAACCACGCTCGCGAGGCAGCCATCTACACGCCACAGGAATGAG
CAATTGTGGCGTTGGCGCAAGCATACATACGAGAAGACCAACACAAAGGA
GGAAAGGTCTGGCCTCTGTCAAGCCCTCAACCCTGCTGGCACTGACGGCC
CTCTTGTTTACTGCTGCCACCGTACACGCTTTTCTGCCTGCAAGCGCACC
TTCCCAGAAAATGCTCTTGAGACCAGCTCTGCGGACAGCGGCTGTTACGG
CGACAGCATACCCTCGTGCCTCTCTGACTCGCACGCTGCTGGTGCGCATG
CAAAGTGGGGGAGACGGCGCAGACGCCACCGCTCCCCCCAAGAAGCCGAA
GCAGCAACAAAAGCAAAAAGGCGGCGGCAAGCAACCTAAAGTGGAAGAGG
AGCTCTTAACAGGCGCAGCATTGACAGCGAAGGAGAACGAGATAAAGCAG
GATAGGTTGGTCAAGGCCCGGGCCATGGAAGCGGAGGGCCGAACGGCATT
TGCCACAACCTACCGGGTAACGGCGACGGTGGCCTCGATCAACGAGAAAT
GGGCTGCCCTTGAACCTGGGGTTGAGGACGAGGAGGCTGATGTATCGGTG
GCGGGGCGGATAATGGCGCGACGGGTGTTTGGGAAGCTAGCGTTTTTTAC
CTTGCAAGACGACAGTGGGGTCATTCAGTTGTACTTGGACAAGGGAAGGT
TGGAGGAGGAGTTTACGAAGCTGAAGGCATGGACGGATAGTGGAGATATT
GTGGGAGTGCGGGGGTCGGTGAAACGAACAGAGAAGGGGGAGATTTCGGT
ATATGCCAGGGAGTGGACAATGCTGACCAAGTCTCTCTTACCTCTGCCTG
ATAAATGGCATGGGCTCACGGATGTGAATAAGCGCTATAGGCAGAGGGAG
ACTGATTTAATTGTGAACCCGCATGTGAAAGAAATGTTTCGGCTGCGTGC
TAAGATGTTTTCTGGTATTCGGAGGATGCTTGATGATAAGGGTTTTCTGG
AGATAGAGACGCCTATCTTACAGACTCACCCCGGGGGGGCCGATGCCAGG
CCTTTCAAGACGTTCCACAACAGTCTGGACATGGATTTGACCTTACGGAT
TGCGACGGAATTGCATCTGAAAAGATTGGTGGTGGGGGGTTTTGATCGGG
TGTATGAGCTGGGGCGTATTTTTAGGAACGAGGGTATCTCGACGAGGCAT
AACCCGGAGTTTACTTCCATTGAGTTGTATCAGGCCTACAGCGACTATCA
CGACATGATGGATTTAACCGAGGAGATCATCAGTGGTCTGGCTACAAAAC
TCTTACAAACTGAGACCCTGACGTATCAGAATACCACCATTAACTTTCAA
CGTCCCTGGCGACGCGCTACCATGCATGAACTGGTCGCGGAGAAGCTACC
CGGAAATTTTGATTTGGCAACACTGCGAGACAGTAGTCCCGAGAGTCTCG
AAAAAGCCAAAGAGATAGCACGTGCGGCCAGTGTTCCTGAAATTGAAACT
TGTATCAGTGTTGGTCATGTGGTCCAGGCGTGTTTCGAAGAGCTGTGTGA
GGCTGACTTGATTCAACCAACCTTTGTGATTGATCATCCTGTGGAGGTCT
CTCCGCTGGCGAAGCCGCATAGGAGCAAGCCAGGACTGACGGAGCGATTT
GAGTTGTTCGTGTATGGGAGGGAGTTGGCGAATGCTTTTTCGGAGCTGAC
GGACCCCGTAGATCAGAGGAGGCGGTTCGAGGAGCAGGTCGAGAGGAAGG
CGAAGCTAGGGTTGGAGGAAGCGGCGGAGGTTGATGAGGAGTTCTTGGCC
GCGCTGGAGAGAGGAATGCCTCCGACAGGGGGATTGGGGATTGGCCTTGA
TAGGCTGGTGATGCTCTTTGGTGATGCACCGTCAATTAAGGATGTGATTG
CCTTCCCGCTGTTGAGGAAGGAGGATTAGGGGGATGGGGGCGAAGGAGGG
AGAGAAGGAGGGGTGGTATTGAAAGCACCGATTTGAAAAGGTAGATTTAC
AAAATAGTACGAAAAGGTGCAGGGGTAGTCGCTTGATTTTATTGTTACTT
TCATGATTTTCTTGCTCCTCCTCCCCCTCTTTCGCTCACTTGGGCGCGCG
CTGCAAGAGGAGGGAAAAC

protein sequence of jgi.p|Nanoce1779_2|576391

>mRNA_156-protein ID=mRNA_156-protein|Name=jgi.p|Nanoce1779_2|576391|organism=Nannochloropsis oceanica|type=polypeptide|length=628bp
MSNCGVGASIHTRRPTQRRKGLASVKPSTLLALTALLFTAATVHAFLPAS
APSQKMLLRPALRTAAVTATAYPRASLTRTLLVRMQSGGDGADATAPPKK
PKQQQKQKGGGKQPKVEEELLTGAALTAKENEIKQDRLVKARAMEAEGRT
AFATTYRVTATVASINEKWAALEPGVEDEEADVSVAGRIMARRVFGKLAF
FTLQDDSGVIQLYLDKGRLEEEFTKLKAWTDSGDIVGVRGSVKRTEKGEI
SVYAREWTMLTKSLLPLPDKWHGLTDVNKRYRQRETDLIVNPHVKEMFRL
RAKMFSGIRRMLDDKGFLEIETPILQTHPGGADARPFKTFHNSLDMDLTL
RIATELHLKRLVVGGFDRVYELGRIFRNEGISTRHNPEFTSIELYQAYSD
YHDMMDLTEEIISGLATKLLQTETLTYQNTTINFQRPWRRATMHELVAEK
LPGNFDLATLRDSSPESLEKAKEIARAASVPEIETCISVGHVVQACFEEL
CEADLIQPTFVIDHPVEVSPLAKPHRSKPGLTERFELFVYGRELANAFSE
LTDPVDQRRRFEEQVERKAKLGLEEAAEVDEEFLAALERGMPPTGGLGIG
LDRLVMLFGDAPSIKDVIAFPLLRKED*

mRNA from alignment at scaffold_3:401561..403679-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_156 ID=mRNA_156|Name=jgi.p|Nanoce1779_2|576391|organism=Nannochloropsis oceanica|type=mRNA|length=2119bp|location=Sequence derived from alignment at scaffold_3:401561..403679- (Nannochloropsis oceanica)
ACAGGCCAACCACGCTCGCGAGGCAGCCATCTACACGCCACAGGAATGAG
CAATTGTGGCGTTGGCGCAAGCATACATACGAGAAGACCAACACAAAGGA
GGAAAGGTCTGGCCTCTGTCAAGCCCTCAACCCTGCTGGCACTGACGGCC
CTCTTGTTTACTGCTGCCACCGTACACGCTTTTCTGCCTGCAAGCGCACC
TTCCCAGAAAATGCTCTTGAGACCAGCTCTGCGGACAGCGGCTGTTACGG
CGACAGCATACCCTCGTGCCTCTCTGACTCGCACGCTGCTGGTGCGCATG
CAAAGTGGGGGAGACGGCGCAGACGCCACCGCTCCCCCCAAGAAGCCGAA
GCAGCAACAAAAGCAAAAAGGCGGCGGCAAGCAACCTAAAGTGGAAGAGG
AGCTCTTAACAGGCGCAGCATTGACAGCGAAGGAGAACGAGATAAAGCAG
GATAGGTTGGTCAAGGCCCGGGCCATGGAAGCGGAGGGCCGAACGGCATT
TGCCACAACCTACCGGGTAACGGCGACGGTGGCCTCGATCAACGAGAAAT
GGGCTGCCCTTGAACCTGGGGTTGAGGACGAGGAGGCTGATGTATCGGTG
GCGGGGCGGATAATGGCGCGACGGGTGTTTGGGAAGCTAGCGTTTTTTAC
CTTGCAAGACGACAGTGGGGTCATTCAGTTGTACTTGGACAAGGGAAGGT
TGGAGGAGGAGTTTACGAAGCTGAAGGCATGGACGGATAGTGGAGATATT
GTGGGAGTGCGGGGGTCGGTGAAACGAACAGAGAAGGGGGAGATTTCGGT
ATATGCCAGGGAGTGGACAATGCTGACCAAGTCTCTCTTACCTCTGCCTG
ATAAATGGCATGGGCTCACGGATGTGAATAAGCGCTATAGGCAGAGGGAG
ACTGATTTAATTGTGAACCCGCATGTGAAAGAAATGTTTCGGCTGCGTGC
TAAGATGTTTTCTGGTATTCGGAGGATGCTTGATGATAAGGGTTTTCTGG
AGATAGAGACGCCTATCTTACAGACTCACCCCGGGGGGGCCGATGCCAGG
CCTTTCAAGACGTTCCACAACAGTCTGGACATGGATTTGACCTTACGGAT
TGCGACGGAATTGCATCTGAAAAGATTGGTGGTGGGGGGTTTTGATCGGG
TGTATGAGCTGGGGCGTATTTTTAGGAACGAGGGTATCTCGACGAGGCAT
AACCCGGAGTTTACTTCCATTGAGTTGTATCAGGCCTACAGCGACTATCA
CGACATGATGGATTTAACCGAGGAGATCATCAGTGGTCTGGCTACAAAAC
TCTTACAAACTGAGACCCTGACGTATCAGAATACCACCATTAACTTTCAA
CGTCCCTGGCGACGCGCTACCATGCATGAACTGGTCGCGGAGAAGCTACC
CGGAAATTTTGATTTGGCAACACTGCGAGACAGTAGTCCCGAGAGTCTCG
AAAAAGCCAAAGAGATAGCACGTGCGGCCAGTGTTCCTGAAATTGAAACT
TGTATCAGTGTTGGTCATGTGGTCCAGGCGTGTTTCGAAGAGCTGTGTGA
GGCTGACTTGATTCAACCAACCTTTGTGATTGATCATCCTGTGGAGGTCT
CTCCGCTGGCGAAGCCGCATAGGAGCAAGCCAGGACTGACGGAGCGATTT
GAGTTGTTCGTGTATGGGAGGGAGTTGGCGAATGCTTTTTCGGAGCTGAC
GGACCCCGTAGATCAGAGGAGGCGGTTCGAGGAGCAGGTCGAGAGGAAGG
CGAAGCTAGGGTTGGAGGAAGCGGCGGAGGTTGATGAGGAGTTCTTGGCC
GCGCTGGAGAGAGGAATGCCTCCGACAGGGGGATTGGGGATTGGCCTTGA
TAGGCTGGTGATGCTCTTTGGTGATGCACCGTCAATTAAGGATGTGATTG
CCTTCCCGCTGTTGAGGAAGGAGGATTAGGGGGATGGGGGCGAAGGAGGG
AGAGAAGGAGGGGTGGTATTGAAAGCACCGATTTGAAAAGGTAGATTTAC
AAAATAGTACGAAAAGGTGCAGGGGTAGTCGCTTGATTTTATTGTTACTT
TCATGATTTTCTTGCTCCTCCTCCCCCTCTTTCGCTCACTTGGGCGCGCG
CTGCAAGAGGAGGGAAAAC

Coding sequence (CDS) from alignment at scaffold_3:401561..403679-

>mRNA_156 ID=mRNA_156|Name=jgi.p|Nanoce1779_2|576391|organism=Nannochloropsis oceanica|type=CDS|length=1884bp|location=Sequence derived from alignment at scaffold_3:401561..403679- (Nannochloropsis oceanica)
ATGAGCAATTGTGGCGTTGGCGCAAGCATACATACGAGAAGACCAACACA
AAGGAGGAAAGGTCTGGCCTCTGTCAAGCCCTCAACCCTGCTGGCACTGA
CGGCCCTCTTGTTTACTGCTGCCACCGTACACGCTTTTCTGCCTGCAAGC
GCACCTTCCCAGAAAATGCTCTTGAGACCAGCTCTGCGGACAGCGGCTGT
TACGGCGACAGCATACCCTCGTGCCTCTCTGACTCGCACGCTGCTGGTGC
GCATGCAAAGTGGGGGAGACGGCGCAGACGCCACCGCTCCCCCCAAGAAG
CCGAAGCAGCAACAAAAGCAAAAAGGCGGCGGCAAGCAACCTAAAGTGGA
AGAGGAGCTCTTAACAGGCGCAGCATTGACAGCGAAGGAGAACGAGATAA
AGCAGGATAGGTTGGTCAAGGCCCGGGCCATGGAAGCGGAGGGCCGAACG
GCATTTGCCACAACCTACCGGGTAACGGCGACGGTGGCCTCGATCAACGA
GAAATGGGCTGCCCTTGAACCTGGGGTTGAGGACGAGGAGGCTGATGTAT
CGGTGGCGGGGCGGATAATGGCGCGACGGGTGTTTGGGAAGCTAGCGTTT
TTTACCTTGCAAGACGACAGTGGGGTCATTCAGTTGTACTTGGACAAGGG
AAGGTTGGAGGAGGAGTTTACGAAGCTGAAGGCATGGACGGATAGTGGAG
ATATTGTGGGAGTGCGGGGGTCGGTGAAACGAACAGAGAAGGGGGAGATT
TCGGTATATGCCAGGGAGTGGACAATGCTGACCAAGTCTCTCTTACCTCT
GCCTGATAAATGGCATGGGCTCACGGATGTGAATAAGCGCTATAGGCAGA
GGGAGACTGATTTAATTGTGAACCCGCATGTGAAAGAAATGTTTCGGCTG
CGTGCTAAGATGTTTTCTGGTATTCGGAGGATGCTTGATGATAAGGGTTT
TCTGGAGATAGAGACGCCTATCTTACAGACTCACCCCGGGGGGGCCGATG
CCAGGCCTTTCAAGACGTTCCACAACAGTCTGGACATGGATTTGACCTTA
CGGATTGCGACGGAATTGCATCTGAAAAGATTGGTGGTGGGGGGTTTTGA
TCGGGTGTATGAGCTGGGGCGTATTTTTAGGAACGAGGGTATCTCGACGA
GGCATAACCCGGAGTTTACTTCCATTGAGTTGTATCAGGCCTACAGCGAC
TATCACGACATGATGGATTTAACCGAGGAGATCATCAGTGGTCTGGCTAC
AAAACTCTTACAAACTGAGACCCTGACGTATCAGAATACCACCATTAACT
TTCAACGTCCCTGGCGACGCGCTACCATGCATGAACTGGTCGCGGAGAAG
CTACCCGGAAATTTTGATTTGGCAACACTGCGAGACAGTAGTCCCGAGAG
TCTCGAAAAAGCCAAAGAGATAGCACGTGCGGCCAGTGTTCCTGAAATTG
AAACTTGTATCAGTGTTGGTCATGTGGTCCAGGCGTGTTTCGAAGAGCTG
TGTGAGGCTGACTTGATTCAACCAACCTTTGTGATTGATCATCCTGTGGA
GGTCTCTCCGCTGGCGAAGCCGCATAGGAGCAAGCCAGGACTGACGGAGC
GATTTGAGTTGTTCGTGTATGGGAGGGAGTTGGCGAATGCTTTTTCGGAG
CTGACGGACCCCGTAGATCAGAGGAGGCGGTTCGAGGAGCAGGTCGAGAG
GAAGGCGAAGCTAGGGTTGGAGGAAGCGGCGGAGGTTGATGAGGAGTTCT
TGGCCGCGCTGGAGAGAGGAATGCCTCCGACAGGGGGATTGGGGATTGGC
CTTGATAGGCTGGTGATGCTCTTTGGTGATGCACCGTCAATTAAGGATGT
GATTGCCTTCCCGCTGTTGAGGAAGGAGGATTAG

Synonyms

Publications