jgi.p|Nanoce1779_2|11383, mRNA_1557 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|11383
Unique NamemRNA_1557
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length509
Alignment locationscaffold_1:942936..943444 -

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Properties
Property NameValue
TranscriptId11469
TrackFilteredModels2
ProteinId11383
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:942936..943444 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|11383gene_1557Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|11383mRNA_1557-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1557CDS_1557Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1557 ID=mRNA_1557|Name=jgi.p|Nanoce1779_2|11383|organism=Nannochloropsis oceanica|type=mRNA|length=509bp
AGGAGGAGTAAGAAAGGGAGAAGCTGGGGAGCGATCGTGTTGGAGGGTCT
CATCTTCGAGCTGGTAGTAGAAATTGGAGGACCAAACTCTCAGCCATTTC
AGTCAGACACAGTTGGACATGGGATACGATTGCAACACTTACAAGAGCAG
TCACCGCAAGATGCACGTTAAGATGTGGGTGTGGGGTACGTATGTCTTTC
GTGCTAATTCCAGGGAAGGATGATGATGTGCTTGCCATTCTATTTTATTT
TTTGCGTCTCTTTAGTTTGTTTCCCATCTTTCAAACCAGCAACGTCAACT
AGGATCGTGTCCGTGAAGCAGAAAAATATGCGAGCGAAGTTAAAGAGAGA
CGGAGACAGAGACGTAGTCAAACACAACAGGAGAAGTAGTATCGGACGGG
TTGAAGGACAGGTAGATGGTCGCAGAGACCTGACGATGAGATGGAAAGAA
GGAAAAATGGCAAATGGGGATTATTGAACACCCAGTGATTGAAGAGATAA
GTTGAAGCA
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protein sequence of jgi.p|Nanoce1779_2|11383

>mRNA_1557-protein ID=mRNA_1557-protein|Name=jgi.p|Nanoce1779_2|11383|organism=Nannochloropsis oceanica|type=polypeptide|length=86bp
MMMCLPFYFIFCVSLVCFPSFKPATSTRIVSVKQKNMRAKLKRDGDRDVV
KHNRRSSIGRVEGQVDGRRDLTMRWKEGKMANGDY*
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mRNA from alignment at scaffold_1:942936..943444-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1557 ID=mRNA_1557|Name=jgi.p|Nanoce1779_2|11383|organism=Nannochloropsis oceanica|type=mRNA|length=509bp|location=Sequence derived from alignment at scaffold_1:942936..943444- (Nannochloropsis oceanica)
AGGAGGAGTAAGAAAGGGAGAAGCTGGGGAGCGATCGTGTTGGAGGGTCT
CATCTTCGAGCTGGTAGTAGAAATTGGAGGACCAAACTCTCAGCCATTTC
AGTCAGACACAGTTGGACATGGGATACGATTGCAACACTTACAAGAGCAG
TCACCGCAAGATGCACGTTAAGATGTGGGTGTGGGGTACGTATGTCTTTC
GTGCTAATTCCAGGGAAGGATGATGATGTGCTTGCCATTCTATTTTATTT
TTTGCGTCTCTTTAGTTTGTTTCCCATCTTTCAAACCAGCAACGTCAACT
AGGATCGTGTCCGTGAAGCAGAAAAATATGCGAGCGAAGTTAAAGAGAGA
CGGAGACAGAGACGTAGTCAAACACAACAGGAGAAGTAGTATCGGACGGG
TTGAAGGACAGGTAGATGGTCGCAGAGACCTGACGATGAGATGGAAAGAA
GGAAAAATGGCAAATGGGGATTATTGAACACCCAGTGATTGAAGAGATAA
GTTGAAGCA
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Coding sequence (CDS) from alignment at scaffold_1:942936..943444-

>mRNA_1557 ID=mRNA_1557|Name=jgi.p|Nanoce1779_2|11383|organism=Nannochloropsis oceanica|type=CDS|length=258bp|location=Sequence derived from alignment at scaffold_1:942936..943444- (Nannochloropsis oceanica)
ATGATGATGTGCTTGCCATTCTATTTTATTTTTTGCGTCTCTTTAGTTTG
TTTCCCATCTTTCAAACCAGCAACGTCAACTAGGATCGTGTCCGTGAAGC
AGAAAAATATGCGAGCGAAGTTAAAGAGAGACGGAGACAGAGACGTAGTC
AAACACAACAGGAGAAGTAGTATCGGACGGGTTGAAGGACAGGTAGATGG
TCGCAGAGACCTGACGATGAGATGGAAAGAAGGAAAAATGGCAAATGGGG
ATTATTGA
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Synonyms
Publications