jgi.p|Nanoce1779_2|572675, mRNA_1555 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|572675
Unique NamemRNA_1555
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length947
Alignment locationscaffold_1:939326..940272 -

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Properties
Property NameValue
TranscriptId572761
TrackFilteredModels2
ProteinId572675
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:939326..940272 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572675gene_1555Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572675mRNA_1555-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1555CDS_1555Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1555 ID=mRNA_1555|Name=jgi.p|Nanoce1779_2|572675|organism=Nannochloropsis oceanica|type=mRNA|length=947bp
CAGAAACAAACATGCCGCCTAAAAATGAAGATGCAAAGCGCACAAGTAAT
ACGAGCGGCAATCAAGTCTCTCTAATTAACACCGCCTTTCAGGCGGCCAG
CCGCGACTCAAGCACCAGCAATTCCTCCACATCTTTATTTCTCTTTTACG
GCATGGCAGGTGCAGTGGGGCTGCTGACGATGGCTTCCTTACCATTCTTG
GTCGTACCTATGCTGAAAGGAAATGCCCTACCTTATATGAACATTCCCGT
TGTCAAATACAAGAATCTCTTTGACAAGATATTGCCCCGCCACATCTACC
ACGGACGTCCAAAAAGGGCTCTGCCGCATCGCTTCATAGATTTAGGGCAC
GGCTTTGGAGAGGCCGTCGTGAGTGCGGCGCAACGAGGGTACTTCGCCGC
AGGCGTGGAGCTCAATCCCACACTATATTTGCTATCGGTATGGAACGTGT
GGCGACATCGTCTCTGGTGGCCATTTGACACTCGCGTGAGGCTTGTGTGC
GGTGACATGTGGAAGCGAGATTTACGTTTTGGTGAGCAAGACGTCATCTT
AATGTTTGGGGTACAAAGTCTCATGGCTCAATTGACAGCGAAGGTACTAG
CTGAGGCCAAGGATGGTGCATTAGTGGTGCTGTATCGCTTCCAGCTCACC
CTGCCAGCTTCATCACCGTCTTTGTCGCCGTCATCACCTTTGTCGTTGGC
TGTGGCGGAAGAGAGAGTAGGAGCGGAATGCAAGAGTGGGACGGTGAGCA
ATAATACAAAGGCCGAAATTGAATTGCTGGAAGTGAGCGAAGATGAGTTT
TCCGTGTATCGTGTGCTTCGGCCGGTATCATGGATAAGAGAAGGAGGAAT
GGTAGAGAATGCAAACAACGACAGCAGCAGCAGCAGCAGGAGTAGGAAGA
GGAAATGAGGCTTCTCGAAAGTAAAACTTGTATAAATAGATGTGCTC
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protein sequence of jgi.p|Nanoce1779_2|572675

>mRNA_1555-protein ID=mRNA_1555-protein|Name=jgi.p|Nanoce1779_2|572675|organism=Nannochloropsis oceanica|type=polypeptide|length=299bp
MPPKNEDAKRTSNTSGNQVSLINTAFQAASRDSSTSNSSTSLFLFYGMAG
AVGLLTMASLPFLVVPMLKGNALPYMNIPVVKYKNLFDKILPRHIYHGRP
KRALPHRFIDLGHGFGEAVVSAAQRGYFAAGVELNPTLYLLSVWNVWRHR
LWWPFDTRVRLVCGDMWKRDLRFGEQDVILMFGVQSLMAQLTAKVLAEAK
DGALVVLYRFQLTLPASSPSLSPSSPLSLAVAEERVGAECKSGTVSNNTK
AEIELLEVSEDEFSVYRVLRPVSWIREGGMVENANNDSSSSSRSRKRK*
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mRNA from alignment at scaffold_1:939326..940272-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1555 ID=mRNA_1555|Name=jgi.p|Nanoce1779_2|572675|organism=Nannochloropsis oceanica|type=mRNA|length=947bp|location=Sequence derived from alignment at scaffold_1:939326..940272- (Nannochloropsis oceanica)
CAGAAACAAACATGCCGCCTAAAAATGAAGATGCAAAGCGCACAAGTAAT
ACGAGCGGCAATCAAGTCTCTCTAATTAACACCGCCTTTCAGGCGGCCAG
CCGCGACTCAAGCACCAGCAATTCCTCCACATCTTTATTTCTCTTTTACG
GCATGGCAGGTGCAGTGGGGCTGCTGACGATGGCTTCCTTACCATTCTTG
GTCGTACCTATGCTGAAAGGAAATGCCCTACCTTATATGAACATTCCCGT
TGTCAAATACAAGAATCTCTTTGACAAGATATTGCCCCGCCACATCTACC
ACGGACGTCCAAAAAGGGCTCTGCCGCATCGCTTCATAGATTTAGGGCAC
GGCTTTGGAGAGGCCGTCGTGAGTGCGGCGCAACGAGGGTACTTCGCCGC
AGGCGTGGAGCTCAATCCCACACTATATTTGCTATCGGTATGGAACGTGT
GGCGACATCGTCTCTGGTGGCCATTTGACACTCGCGTGAGGCTTGTGTGC
GGTGACATGTGGAAGCGAGATTTACGTTTTGGTGAGCAAGACGTCATCTT
AATGTTTGGGGTACAAAGTCTCATGGCTCAATTGACAGCGAAGGTACTAG
CTGAGGCCAAGGATGGTGCATTAGTGGTGCTGTATCGCTTCCAGCTCACC
CTGCCAGCTTCATCACCGTCTTTGTCGCCGTCATCACCTTTGTCGTTGGC
TGTGGCGGAAGAGAGAGTAGGAGCGGAATGCAAGAGTGGGACGGTGAGCA
ATAATACAAAGGCCGAAATTGAATTGCTGGAAGTGAGCGAAGATGAGTTT
TCCGTGTATCGTGTGCTTCGGCCGGTATCATGGATAAGAGAAGGAGGAAT
GGTAGAGAATGCAAACAACGACAGCAGCAGCAGCAGCAGGAGTAGGAAGA
GGAAATGAGGCTTCTCGAAAGTAAAACTTGTATAAATAGATGTGCTC
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Coding sequence (CDS) from alignment at scaffold_1:939326..940272-

>mRNA_1555 ID=mRNA_1555|Name=jgi.p|Nanoce1779_2|572675|organism=Nannochloropsis oceanica|type=CDS|length=897bp|location=Sequence derived from alignment at scaffold_1:939326..940272- (Nannochloropsis oceanica)
ATGCCGCCTAAAAATGAAGATGCAAAGCGCACAAGTAATACGAGCGGCAA
TCAAGTCTCTCTAATTAACACCGCCTTTCAGGCGGCCAGCCGCGACTCAA
GCACCAGCAATTCCTCCACATCTTTATTTCTCTTTTACGGCATGGCAGGT
GCAGTGGGGCTGCTGACGATGGCTTCCTTACCATTCTTGGTCGTACCTAT
GCTGAAAGGAAATGCCCTACCTTATATGAACATTCCCGTTGTCAAATACA
AGAATCTCTTTGACAAGATATTGCCCCGCCACATCTACCACGGACGTCCA
AAAAGGGCTCTGCCGCATCGCTTCATAGATTTAGGGCACGGCTTTGGAGA
GGCCGTCGTGAGTGCGGCGCAACGAGGGTACTTCGCCGCAGGCGTGGAGC
TCAATCCCACACTATATTTGCTATCGGTATGGAACGTGTGGCGACATCGT
CTCTGGTGGCCATTTGACACTCGCGTGAGGCTTGTGTGCGGTGACATGTG
GAAGCGAGATTTACGTTTTGGTGAGCAAGACGTCATCTTAATGTTTGGGG
TACAAAGTCTCATGGCTCAATTGACAGCGAAGGTACTAGCTGAGGCCAAG
GATGGTGCATTAGTGGTGCTGTATCGCTTCCAGCTCACCCTGCCAGCTTC
ATCACCGTCTTTGTCGCCGTCATCACCTTTGTCGTTGGCTGTGGCGGAAG
AGAGAGTAGGAGCGGAATGCAAGAGTGGGACGGTGAGCAATAATACAAAG
GCCGAAATTGAATTGCTGGAAGTGAGCGAAGATGAGTTTTCCGTGTATCG
TGTGCTTCGGCCGGTATCATGGATAAGAGAAGGAGGAATGGTAGAGAATG
CAAACAACGACAGCAGCAGCAGCAGCAGGAGTAGGAAGAGGAAATGA
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Synonyms
Publications