jgi.p|Nanoce1779_2|572672, mRNA_1554 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|572672
Unique Name	mRNA_1554
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2289
Alignment location	scaffold_1:937119..939407 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	572758
Track	FilteredModels2
ProteinId	572672

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_1	supercontig	scaffold_1:937119..939407 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|572672	gene_1554	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|572672	mRNA_1554-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1554	CDS_1554	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_1:937119..939407+
coding sequence from alignment at scaffold_1:937119..939407+

mRNA sequence

>mRNA_1554 ID=mRNA_1554|Name=jgi.p|Nanoce1779_2|572672|organism=Nannochloropsis oceanica|type=mRNA|length=2289bp
GAGACATTTTGGAAGTTTCCCTTGGTGGGGAAGAGGAAAGCGGAGGAGGG
GAGTGGTACGGTGGCCCATGAGACTTTCGAGGCGAGTACGTTTGCCTTCT
CTTGCTTTGCTGTTTGCCACAAGACTTCACATTCTCCACTTTTTTATTCA
CCCTCCGAAGAGTACAGACTTTTGAAAAACACCAGGAAGCGCTGTCTGCC
CAAATCCGTGGAGTTAGACTGCGTGCCGATGGTTAACTCAACCAAGCTTG
AGTCCAGGACTCAAGATATGATCATGTTTGGCGTCGCCCTTGTGGTTGCC
ACCACCCTCATGCCAGGGCCGAGTCACGCGTTTGTAGGCCTTCCGCGGCC
AGCACACCATCACAGAAGAAGAGAACGGCCATGGATACAGCAATCCTGTT
TCTCGGTATCTCCCGCCTCCGCAAGCACTACGATCCCCACCCTGTTCCCC
ACTCCCACTCCAGATGACATGGCCATCTACTCCGACCGCCTTCATGCCCT
CGACATGCTGGCCCCTCTCCAAGTCGCCATCATCCAATCCCGTCTTGAAC
ATCTTCACACTCTGTTCCCCAGTGAGAATGCCACCTCCATGGCTTACCGC
CTCCCTGACCTGCTCCGCGTCGAACCCACCGACCTCGCGCACCGAGTGGC
CGAGCGCCGAGTGCAACTTGAGGCCTTACTTCCCGCCTGTCGCCCCCTCC
GTATGATGGCCAAGGTACCTGCTCTCGTCTTCCAAGACTTTGACGCACAA
ACCAAGAAAGTTGCAGAGAACCTTCGACGGGAATTTCCCGAGATGGACCT
AGCGCGGGTCGTGTACCAAAACCCCATTGTCCTTGCCCGCGAATGGGACG
CCGTCATCCTCCCAAAAATAACAGCCCTCCGCGCCCTGTTCCCGAAGCAA
GACCTCGGCAAAATGATTGCTCGTCGTCCCGACCTCCTCTCACGAGACGT
GGAAGGGAAAATGACAGAAAAACTTGCAGGACTAGCCGCCCTCCTTCCCT
CCGTCAACGTCCAAGAGCTCGTCGCCCGCCAACCCGATCTCCTCGCCCGC
GATCTCTCCCTCATCTCCTCCCGGATCAAGCATCTCGAATCCCTCTTTCC
TACCTCCATCCCTGGTGAGATTTTCACGATGATTAGCCGTAAACCCACTC
TCCTACTTACCAACAGTGACCGTGTGATAGGCCCCAAACTGGGCCACCTC
AAGCGCCTCCTCGGTTCGGCCGCCGCGCTGGAACTCTGCCACGCGATGCC
CACTATCTTCAATCGTGACCTAGATAAAGTTGAAGAGCGCTTAGGGGCCT
TGATCGCACACTTGCCTGGTATTGACGTCGTCAGATTTTTGAAGTTAAAC
CCCGCGTTTTTGACTGAGCCCGAAGGAGACGTCAGTGGCCACTTGGCTGC
CTTGCACACCGCCCTCCCTCCAGGGGTAGAGCTCGCGAAGCTTCTCGCGC
AAGAACCACAATTATACACGGAGAAAGCGGCAGTCTTGGCGTTGAAGTTG
AGGGAGGTCCGGGAGAGGACGGGCCTGGAGGTAGAGGAGATGACGGTGCG
ACTAGGTAGGGATGCGAGATTTTTGATTGTCCCTTATGGATTACTTGCGG
CCCGTTTGCGTTTTTGGGCGGCCTGGCAGCAGGTATCGGCGGAAGGAAAG
GATGCAGAGGAAATGAAGGGGAAGCAGGCAGGGGAAGAGGAGAGGAAGAA
GGCGTTGAAAAGGATCAATCTGAGTTCGTTGGTGGGCATGCCGTTGGACC
GATTCGTGGCGCTCTATCCTGCCTACCCTCACTACCTCGCCAGTAAGTTG
GGGGGGGACTGGACGCCCGCTTTGGGAGGCAATAATGCGTTTAGGCTTGA
AAAGGTGTATTCGGGCGTGTTGTGGCGTCAGACGGGGTTGGTGTATGAAA
AGGCTCGTTTCACTGGTGACCATGGTGGTGACCATGGTGGGGGCTACCAT
CAAGTGAATGGTGGAGGAGGGAGGCAATGGAAAAAGGGATCGCAGTATTC
GAAGCAGCAATCACCGGGGAGGTCAAAACCATACAATGCGAAGCGTCCGG
TCATGTCTCCTTAATTAAGGGGTGAGATGGAAAGAATGTGACACAAATAC
CGGGAGAAATTGAATAAATGCAGAGATTGAAGACGGAGAAACCTGAGGTG
TTTCATGCTTTTTTTTGTGTGCCGAGCATAAAATCTTACCGCTGATAGCA
GTTTGACGAGCACATCTATTTATACAAGTTTTACTTTCGAGAAGCCTCAT
TTCCTCTTCCTACTCCTGCTGCTGCTGCTGCTGTCGTTG

protein sequence of jgi.p|Nanoce1779_2|572672

>mRNA_1554-protein ID=mRNA_1554-protein|Name=jgi.p|Nanoce1779_2|572672|organism=Nannochloropsis oceanica|type=polypeptide|length=612bp
MVNSTKLESRTQDMIMFGVALVVATTLMPGPSHAFVGLPRPAHHHRRRER
PWIQQSCFSVSPASASTTIPTLFPTPTPDDMAIYSDRLHALDMLAPLQVA
IIQSRLEHLHTLFPSENATSMAYRLPDLLRVEPTDLAHRVAERRVQLEAL
LPACRPLRMMAKVPALVFQDFDAQTKKVAENLRREFPEMDLARVVYQNPI
VLAREWDAVILPKITALRALFPKQDLGKMIARRPDLLSRDVEGKMTEKLA
GLAALLPSVNVQELVARQPDLLARDLSLISSRIKHLESLFPTSIPGEIFT
MISRKPTLLLTNSDRVIGPKLGHLKRLLGSAAALELCHAMPTIFNRDLDK
VEERLGALIAHLPGIDVVRFLKLNPAFLTEPEGDVSGHLAALHTALPPGV
ELAKLLAQEPQLYTEKAAVLALKLREVRERTGLEVEEMTVRLGRDARFLI
VPYGLLAARLRFWAAWQQVSAEGKDAEEMKGKQAGEEERKKALKRINLSS
LVGMPLDRFVALYPAYPHYLASKLGGDWTPALGGNNAFRLEKVYSGVLWR
QTGLVYEKARFTGDHGGDHGGGYHQVNGGGGRQWKKGSQYSKQQSPGRSK
PYNAKRPVMSP*

mRNA from alignment at scaffold_1:937119..939407+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1554 ID=mRNA_1554|Name=jgi.p|Nanoce1779_2|572672|organism=Nannochloropsis oceanica|type=mRNA|length=2289bp|location=Sequence derived from alignment at scaffold_1:937119..939407+ (Nannochloropsis oceanica)
GAGACATTTTGGAAGTTTCCCTTGGTGGGGAAGAGGAAAGCGGAGGAGGG
GAGTGGTACGGTGGCCCATGAGACTTTCGAGGCGAGTACGTTTGCCTTCT
CTTGCTTTGCTGTTTGCCACAAGACTTCACATTCTCCACTTTTTTATTCA
CCCTCCGAAGAGTACAGACTTTTGAAAAACACCAGGAAGCGCTGTCTGCC
CAAATCCGTGGAGTTAGACTGCGTGCCGATGGTTAACTCAACCAAGCTTG
AGTCCAGGACTCAAGATATGATCATGTTTGGCGTCGCCCTTGTGGTTGCC
ACCACCCTCATGCCAGGGCCGAGTCACGCGTTTGTAGGCCTTCCGCGGCC
AGCACACCATCACAGAAGAAGAGAACGGCCATGGATACAGCAATCCTGTT
TCTCGGTATCTCCCGCCTCCGCAAGCACTACGATCCCCACCCTGTTCCCC
ACTCCCACTCCAGATGACATGGCCATCTACTCCGACCGCCTTCATGCCCT
CGACATGCTGGCCCCTCTCCAAGTCGCCATCATCCAATCCCGTCTTGAAC
ATCTTCACACTCTGTTCCCCAGTGAGAATGCCACCTCCATGGCTTACCGC
CTCCCTGACCTGCTCCGCGTCGAACCCACCGACCTCGCGCACCGAGTGGC
CGAGCGCCGAGTGCAACTTGAGGCCTTACTTCCCGCCTGTCGCCCCCTCC
GTATGATGGCCAAGGTACCTGCTCTCGTCTTCCAAGACTTTGACGCACAA
ACCAAGAAAGTTGCAGAGAACCTTCGACGGGAATTTCCCGAGATGGACCT
AGCGCGGGTCGTGTACCAAAACCCCATTGTCCTTGCCCGCGAATGGGACG
CCGTCATCCTCCCAAAAATAACAGCCCTCCGCGCCCTGTTCCCGAAGCAA
GACCTCGGCAAAATGATTGCTCGTCGTCCCGACCTCCTCTCACGAGACGT
GGAAGGGAAAATGACAGAAAAACTTGCAGGACTAGCCGCCCTCCTTCCCT
CCGTCAACGTCCAAGAGCTCGTCGCCCGCCAACCCGATCTCCTCGCCCGC
GATCTCTCCCTCATCTCCTCCCGGATCAAGCATCTCGAATCCCTCTTTCC
TACCTCCATCCCTGGTGAGATTTTCACGATGATTAGCCGTAAACCCACTC
TCCTACTTACCAACAGTGACCGTGTGATAGGCCCCAAACTGGGCCACCTC
AAGCGCCTCCTCGGTTCGGCCGCCGCGCTGGAACTCTGCCACGCGATGCC
CACTATCTTCAATCGTGACCTAGATAAAGTTGAAGAGCGCTTAGGGGCCT
TGATCGCACACTTGCCTGGTATTGACGTCGTCAGATTTTTGAAGTTAAAC
CCCGCGTTTTTGACTGAGCCCGAAGGAGACGTCAGTGGCCACTTGGCTGC
CTTGCACACCGCCCTCCCTCCAGGGGTAGAGCTCGCGAAGCTTCTCGCGC
AAGAACCACAATTATACACGGAGAAAGCGGCAGTCTTGGCGTTGAAGTTG
AGGGAGGTCCGGGAGAGGACGGGCCTGGAGGTAGAGGAGATGACGGTGCG
ACTAGGTAGGGATGCGAGATTTTTGATTGTCCCTTATGGATTACTTGCGG
CCCGTTTGCGTTTTTGGGCGGCCTGGCAGCAGGTATCGGCGGAAGGAAAG
GATGCAGAGGAAATGAAGGGGAAGCAGGCAGGGGAAGAGGAGAGGAAGAA
GGCGTTGAAAAGGATCAATCTGAGTTCGTTGGTGGGCATGCCGTTGGACC
GATTCGTGGCGCTCTATCCTGCCTACCCTCACTACCTCGCCAGTAAGTTG
GGGGGGGACTGGACGCCCGCTTTGGGAGGCAATAATGCGTTTAGGCTTGA
AAAGGTGTATTCGGGCGTGTTGTGGCGTCAGACGGGGTTGGTGTATGAAA
AGGCTCGTTTCACTGGTGACCATGGTGGTGACCATGGTGGGGGCTACCAT
CAAGTGAATGGTGGAGGAGGGAGGCAATGGAAAAAGGGATCGCAGTATTC
GAAGCAGCAATCACCGGGGAGGTCAAAACCATACAATGCGAAGCGTCCGG
TCATGTCTCCTTAATTAAGGGGTGAGATGGAAAGAATGTGACACAAATAC
CGGGAGAAATTGAATAAATGCAGAGATTGAAGACGGAGAAACCTGAGGTG
TTTCATGCTTTTTTTTGTGTGCCGAGCATAAAATCTTACCGCTGATAGCA
GTTTGACGAGCACATCTATTTATACAAGTTTTACTTTCGAGAAGCCTCAT
TTCCTCTTCCTACTCCTGCTGCTGCTGCTGCTGTCGTTG

Coding sequence (CDS) from alignment at scaffold_1:937119..939407+

>mRNA_1554 ID=mRNA_1554|Name=jgi.p|Nanoce1779_2|572672|organism=Nannochloropsis oceanica|type=CDS|length=1836bp|location=Sequence derived from alignment at scaffold_1:937119..939407+ (Nannochloropsis oceanica)
ATGGTTAACTCAACCAAGCTTGAGTCCAGGACTCAAGATATGATCATGTT
TGGCGTCGCCCTTGTGGTTGCCACCACCCTCATGCCAGGGCCGAGTCACG
CGTTTGTAGGCCTTCCGCGGCCAGCACACCATCACAGAAGAAGAGAACGG
CCATGGATACAGCAATCCTGTTTCTCGGTATCTCCCGCCTCCGCAAGCAC
TACGATCCCCACCCTGTTCCCCACTCCCACTCCAGATGACATGGCCATCT
ACTCCGACCGCCTTCATGCCCTCGACATGCTGGCCCCTCTCCAAGTCGCC
ATCATCCAATCCCGTCTTGAACATCTTCACACTCTGTTCCCCAGTGAGAA
TGCCACCTCCATGGCTTACCGCCTCCCTGACCTGCTCCGCGTCGAACCCA
CCGACCTCGCGCACCGAGTGGCCGAGCGCCGAGTGCAACTTGAGGCCTTA
CTTCCCGCCTGTCGCCCCCTCCGTATGATGGCCAAGGTACCTGCTCTCGT
CTTCCAAGACTTTGACGCACAAACCAAGAAAGTTGCAGAGAACCTTCGAC
GGGAATTTCCCGAGATGGACCTAGCGCGGGTCGTGTACCAAAACCCCATT
GTCCTTGCCCGCGAATGGGACGCCGTCATCCTCCCAAAAATAACAGCCCT
CCGCGCCCTGTTCCCGAAGCAAGACCTCGGCAAAATGATTGCTCGTCGTC
CCGACCTCCTCTCACGAGACGTGGAAGGGAAAATGACAGAAAAACTTGCA
GGACTAGCCGCCCTCCTTCCCTCCGTCAACGTCCAAGAGCTCGTCGCCCG
CCAACCCGATCTCCTCGCCCGCGATCTCTCCCTCATCTCCTCCCGGATCA
AGCATCTCGAATCCCTCTTTCCTACCTCCATCCCTGGTGAGATTTTCACG
ATGATTAGCCGTAAACCCACTCTCCTACTTACCAACAGTGACCGTGTGAT
AGGCCCCAAACTGGGCCACCTCAAGCGCCTCCTCGGTTCGGCCGCCGCGC
TGGAACTCTGCCACGCGATGCCCACTATCTTCAATCGTGACCTAGATAAA
GTTGAAGAGCGCTTAGGGGCCTTGATCGCACACTTGCCTGGTATTGACGT
CGTCAGATTTTTGAAGTTAAACCCCGCGTTTTTGACTGAGCCCGAAGGAG
ACGTCAGTGGCCACTTGGCTGCCTTGCACACCGCCCTCCCTCCAGGGGTA
GAGCTCGCGAAGCTTCTCGCGCAAGAACCACAATTATACACGGAGAAAGC
GGCAGTCTTGGCGTTGAAGTTGAGGGAGGTCCGGGAGAGGACGGGCCTGG
AGGTAGAGGAGATGACGGTGCGACTAGGTAGGGATGCGAGATTTTTGATT
GTCCCTTATGGATTACTTGCGGCCCGTTTGCGTTTTTGGGCGGCCTGGCA
GCAGGTATCGGCGGAAGGAAAGGATGCAGAGGAAATGAAGGGGAAGCAGG
CAGGGGAAGAGGAGAGGAAGAAGGCGTTGAAAAGGATCAATCTGAGTTCG
TTGGTGGGCATGCCGTTGGACCGATTCGTGGCGCTCTATCCTGCCTACCC
TCACTACCTCGCCAGTAAGTTGGGGGGGGACTGGACGCCCGCTTTGGGAG
GCAATAATGCGTTTAGGCTTGAAAAGGTGTATTCGGGCGTGTTGTGGCGT
CAGACGGGGTTGGTGTATGAAAAGGCTCGTTTCACTGGTGACCATGGTGG
TGACCATGGTGGGGGCTACCATCAAGTGAATGGTGGAGGAGGGAGGCAAT
GGAAAAAGGGATCGCAGTATTCGAAGCAGCAATCACCGGGGAGGTCAAAA
CCATACAATGCGAAGCGTCCGGTCATGTCTCCTTAA

Synonyms

Publications