jgi.p|Nanoce1779_2|572670, mRNA_1553 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|572670
Unique NamemRNA_1553
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length447
Alignment locationscaffold_1:936538..936984 +

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Properties
Property NameValue
TranscriptId572756
TrackFilteredModels2
ProteinId572670
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:936538..936984 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572670gene_1553Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572670mRNA_1553-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1553CDS_1553Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1553 ID=mRNA_1553|Name=jgi.p|Nanoce1779_2|572670|organism=Nannochloropsis oceanica|type=mRNA|length=447bp
GAGACCGTAGAGAAGAAGCCGCCAAGCCTGCCGCAGCTCCCAACATTGCC
ACTGCGTCCTCCTCCTCCTTGCCCCCCCGGAAATTTCAAATGCTCTATAC
GTGCAACATCTGCGAAGGCCGAAACCTAATTCAAGTGGACCGTATTGCAT
TTACCGAGGGGATTGTTGTGGCCCGTTGCAAACACTGTGATGCCAAACAT
TTGGTCGCAGATAATTTAAGTAAGCTGGACTTTGGGGCCGTTCTAGGAAA
GGGCGCCAAGGATGGCGAGGCTCCTCCAACGGGTGGTGGGAAAGTGACGC
TGGAGGATCTGTTGGCGGCGAGTGGACAGGAGGCCAAGTATCTCGACATA
AAGAATAATCCGCAGCTAGCTAAAAAGTATGATTTGGTGGTCTTGGAGGA
TGGGACGGTGGAGCTGGCGCCCAAGGAGAAGAGTGAGGAGTAGACTG
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protein sequence of jgi.p|Nanoce1779_2|572670

>mRNA_1553-protein ID=mRNA_1553-protein|Name=jgi.p|Nanoce1779_2|572670|organism=Nannochloropsis oceanica|type=polypeptide|length=118bp
MLYTCNICEGRNLIQVDRIAFTEGIVVARCKHCDAKHLVADNLSKLDFGA
VLGKGAKDGEAPPTGGGKVTLEDLLAASGQEAKYLDIKNNPQLAKKYDLV
VLEDGTVELAPKEKSEE*
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mRNA from alignment at scaffold_1:936538..936984+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1553 ID=mRNA_1553|Name=jgi.p|Nanoce1779_2|572670|organism=Nannochloropsis oceanica|type=mRNA|length=447bp|location=Sequence derived from alignment at scaffold_1:936538..936984+ (Nannochloropsis oceanica)
GAGACCGTAGAGAAGAAGCCGCCAAGCCTGCCGCAGCTCCCAACATTGCC
ACTGCGTCCTCCTCCTCCTTGCCCCCCCGGAAATTTCAAATGCTCTATAC
GTGCAACATCTGCGAAGGCCGAAACCTAATTCAAGTGGACCGTATTGCAT
TTACCGAGGGGATTGTTGTGGCCCGTTGCAAACACTGTGATGCCAAACAT
TTGGTCGCAGATAATTTAAGTAAGCTGGACTTTGGGGCCGTTCTAGGAAA
GGGCGCCAAGGATGGCGAGGCTCCTCCAACGGGTGGTGGGAAAGTGACGC
TGGAGGATCTGTTGGCGGCGAGTGGACAGGAGGCCAAGTATCTCGACATA
AAGAATAATCCGCAGCTAGCTAAAAAGTATGATTTGGTGGTCTTGGAGGA
TGGGACGGTGGAGCTGGCGCCCAAGGAGAAGAGTGAGGAGTAGACTG
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Coding sequence (CDS) from alignment at scaffold_1:936538..936984+

>mRNA_1553 ID=mRNA_1553|Name=jgi.p|Nanoce1779_2|572670|organism=Nannochloropsis oceanica|type=CDS|length=354bp|location=Sequence derived from alignment at scaffold_1:936538..936984+ (Nannochloropsis oceanica)
ATGCTCTATACGTGCAACATCTGCGAAGGCCGAAACCTAATTCAAGTGGA
CCGTATTGCATTTACCGAGGGGATTGTTGTGGCCCGTTGCAAACACTGTG
ATGCCAAACATTTGGTCGCAGATAATTTAAGTAAGCTGGACTTTGGGGCC
GTTCTAGGAAAGGGCGCCAAGGATGGCGAGGCTCCTCCAACGGGTGGTGG
GAAAGTGACGCTGGAGGATCTGTTGGCGGCGAGTGGACAGGAGGCCAAGT
ATCTCGACATAAAGAATAATCCGCAGCTAGCTAAAAAGTATGATTTGGTG
GTCTTGGAGGATGGGACGGTGGAGCTGGCGCCCAAGGAGAAGAGTGAGGA
GTAG
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Synonyms
Publications