jgi.p|Nanoce1779_2|572669, mRNA_1552 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|572669
Unique NamemRNA_1552
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length533
Alignment locationscaffold_1:935964..936562 +

Link to JBrowse

Properties
Property NameValue
TranscriptId572755
TrackFilteredModels2
ProteinId572669
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:935964..936562 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572669gene_1552Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572669mRNA_1552-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1552CDS_1552Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1552 ID=mRNA_1552|Name=jgi.p|Nanoce1779_2|572669|organism=Nannochloropsis oceanica|type=mRNA|length=533bp
ACAGGCACAATTTCCAACACTAGACGCAACGAGATGGAAACCCGCGGCAG
AATACACGTGACCCTCCAATCCCTTGTTGTCCTTTTGCTGCTTCTCGCAG
CAGCAACGACGCATGGCTTCTATCATCCCATAGGTCCCACTTTCATATCG
AGCAGGAGGAGAGGCGCCTTTCAACCTTGCAGGCGATCCCTGTTGCCCGC
ATCAACACTGTTATTCGCCCCGCTGCCACCGCATCAGCGCCAGTACGACC
ATCTAGAAGGGCGGCGATGGCAGCTCTTGCCATTGGCGGCGGCGGGCGGC
AAAGGCTTCGGGAAAAAACCAAACAAGGAGGGAGGAGGAGAGAGTAGCAA
ACAACAGCCTATGCAGCAGGGAACTGGCAAGGTGGGAAGCTCGACGACCT
GATCGGGCAAAGAAGCGCAACCTCATGTTCTAACTTCTCCCACACATCTC
CTCCCACAAACAAAGGCGGACAAAGGCCCTGACATCATCCGCCCAACCTT
CAGTCAGCGAGACCGTAGAGAAGAAGCCGCCAA
back to top

protein sequence of jgi.p|Nanoce1779_2|572669

>mRNA_1552-protein ID=mRNA_1552-protein|Name=jgi.p|Nanoce1779_2|572669|organism=Nannochloropsis oceanica|type=polypeptide|length=123bp
METRGRIHVTLQSLVVLLLLLAAATTHGFYHPIGPTFISSRRRGAFQPCR
RSLLPASTLLFAPLPPHQRQYDHLEGRRWQLLPLAAAGGKGFGKKPNKEG
GGESSKQQPMQQGTGKVGSSTT*
back to top

mRNA from alignment at scaffold_1:935964..936562+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1552 ID=mRNA_1552|Name=jgi.p|Nanoce1779_2|572669|organism=Nannochloropsis oceanica|type=mRNA|length=599bp|location=Sequence derived from alignment at scaffold_1:935964..936562+ (Nannochloropsis oceanica)
ACAGGCACAATTTCCAACACTAGACGCAACGAGATGGAAACCCGCGGCAG
AATACACGTGACCCTCCAATCCCTTGTTGTCCTTTTGCTGCTTCTCGCAG
CAGCAACGACGCATGGCTTCTATCATCCCATAGGTACGTCACTCCTCTAA
ATACGCGCACATACGATTTTGGTGCACTCACTTCCGCTCCACCCCACAGG
TCCCACTTTCATATCGAGCAGGAGGAGAGGCGCCTTTCAACCTTGCAGGC
GATCCCTGTTGCCCGCATCAACACTGTTATTCGCCCCGCTGCCACCGCAT
CAGCGCCAGTACGACCATCTAGAAGGGCGGCGATGGCAGCTCTTGCCATT
GGCGGCGGCGGGCGGCAAAGGCTTCGGGAAAAAACCAAACAAGGAGGGAG
GAGGAGAGAGTAGCAAACAACAGCCTATGCAGCAGGGAACTGGCAAGGTG
GGAAGCTCGACGACCTGATCGGGCAAAGAAGCGCAACCTCATGTTCTAAC
TTCTCCCACACATCTCCTCCCACAAACAAAGGCGGACAAAGGCCCTGACA
TCATCCGCCCAACCTTCAGTCAGCGAGACCGTAGAGAAGAAGCCGCCAA
back to top

Coding sequence (CDS) from alignment at scaffold_1:935964..936562+

>mRNA_1552 ID=mRNA_1552|Name=jgi.p|Nanoce1779_2|572669|organism=Nannochloropsis oceanica|type=CDS|length=738bp|location=Sequence derived from alignment at scaffold_1:935964..936562+ (Nannochloropsis oceanica)
ATGGAAACCCGCGGCAGAATACACGTGACCCTCCAATCCCTTGTTGTCCT
TTTGCTGCTTCTCGCAGCAGCAACGACGCATGGCTTCTATCATCCCATAG
GTCCCACTTTCATATCGAGCAGGAGGAGAGGCGCCTTTCAACCTTGCAGG
CGATCCCTGTTGCCCGCATCAACACTGTTATTCGCCCCGCTGCCACCGCA
TCAGCGCCAGTACGACCATCTAGAAGGGCGGCGATGGCAGCTCTTGCCAT
TGGCGGCGGCGGGCGGCAAAGGCTTCGGGAAAAAACCAAACAAGGAGGGA
GGAGGAGAGAGTAGCAAACAACAGCCTATGCAGCAGGGAACTGGCAAGGT
GGGAAGCTCGACGACCTGAATGGAAACCCGCGGCAGAATACACGTGACCC
TCCAATCCCTTGTTGTCCTTTTGCTGCTTCTCGCAGCAGCAACGACGCAT
GGCTTCTATCATCCCATAGGTCCCACTTTCATATCGAGCAGGAGGAGAGG
CGCCTTTCAACCTTGCAGGCGATCCCTGTTGCCCGCATCAACACTGTTAT
TCGCCCCGCTGCCACCGCATCAGCGCCAGTACGACCATCTAGAAGGGCGG
CGATGGCAGCTCTTGCCATTGGCGGCGGCGGGCGGCAAAGGCTTCGGGAA
AAAACCAAACAAGGAGGGAGGAGGAGAGAGTAGCAAACAACAGCCTATGC
AGCAGGGAACTGGCAAGGTGGGAAGCTCGACGACCTGA
back to top
Synonyms
Publications