jgi.p|Nanoce1779_2|549366, mRNA_1551 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|549366
Unique NamemRNA_1551
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1507
Alignment locationscaffold_1:934386..935892 -

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Properties
Property NameValue
TranscriptId549452
TrackFilteredModels2
ProteinId549366
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:934386..935892 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|549366gene_1551Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1551CDS_1551Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|549366mRNA_1551-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1551 ID=mRNA_1551|Name=jgi.p|Nanoce1779_2|549366|organism=Nannochloropsis oceanica|type=mRNA|length=1507bp
ACTGCTCATCACCACACGACGCCTCTCCCTACGCCCTTTTCACGCATCCA
CTTTCTCTCATATTATCCGATACAGGCAGCACTCTCGGCACAACCTAGCT
GTCATGGCTCCGGCATCCGCGACCCTGCTGAAGTGGTTGTCCTCGGGACT
TGCTAGAATTGAGTGGGTGGATAAGGAAGAAATGACGGTCAAGGTCGAGG
GGGATGTGGTCAAGGAGCCGAATGCCGTCGCCCGTGCAGTGGCCAAGGCA
GTACGCCCGGCCCTCGTGGGTGTTCTGCCGGCGGAGCATGCACAGGTGGT
GCAATGGCAGTCCTGGTCGACCGATACATCGGACGTTTTCGCTGCGGCAG
TCGAACTCAACACGTTCCTGGAGGGCCGTTCATTCCTGGTGGGCACGGCG
CCAACCCTGGCGGATATTCAAGTGTACTGGGCCTTGGCACCGGGCGTGAA
GCTCACGTTTCCTGGCCCACTGGGTGGGTTGGTGGCCTTAATGCGTTGGT
TTGATTTTATGCAGCACTCATTGCGACAAGAAGCTGCTTTTGACGCGACT
CTCCTCCCCGCTCTCGTCCCGCTCCATTCCATTTACAAACCTGTTTCAAT
GCCTGTATATGACAGAAAGAAGGCGGGAGAGAGCCCGGGAGCACAGGAAC
CGAATGGAAAAGTCGCGCCCGCGGTAGAAAGTACCAAGGGGGGGCCTGTG
AAGAAGGGCAAAGATGCCTCTCCTGCAGCCACCGCCACATCTTCTGGCAG
TGCCCAAAGTGCGGGCGACAAGGCGAATAAGAAACATATGCAGCAGGACG
CTGAAAAGCAGGAAAAGGAGAAGGGCGACAAAGCTGCGGGGAAGGGTGCG
TCTGACCCGACAGTCGAAGGAGGAGGAGGAGGAGCAGCAGCAGCAGCAGC
AGCAGAGAATCCAAACGCTCTTGACATCCGTGTGGGTAGAATGGTCAAAG
TGTGGCCGCATCCTGAAGCTGAGAAACTCTATTGCGAGGAGATTGATTGT
GGGGAGGAGGGTGGGCCGCGACAGATTGCGTCGGGGTTACGTCAGTTTTA
TTCAGAGGCTGCGGAGCTCGAGGGACGGTTGGTGTTGGTCTTGGCGAACC
TGAAACCGAGAAAATTGGTCGGATTTGCCAGTAATGGCATGGTGTTGTGC
GCATCAAATGATGAGCATACAGAGGTGAAGATTGTGGAGCCTCCGGCTGG
TGCCAAGGTGGGGGATCGCGTTGTGTTCCATGGCTTTCCTAGGGAGGGCT
TGCCATTGACGCCCGCGCAAGTGCAGAAGAAGAAGGTGTTTGAGACGTTG
GCACCGGGGTTGATGACGGATGGAAAGGGGGTGTGTGTGTATAAGGTGGC
GAGCCATCCGTTTTGGGTGGGGGAGGAGGGGGGGGGGGGGGGGGCCTTGC
ACCGCGCCCTTGACGAATGCCCACGTGTCGTGAGGTGTGACGGCGAGATT
GATGACGGTGAGCGGGGGTGGATAGTCTTTTGCGCTAGGTTTGCAATTCA
AAAGTAG
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protein sequence of jgi.p|Nanoce1779_2|549366

>mRNA_1551-protein ID=mRNA_1551-protein|Name=jgi.p|Nanoce1779_2|549366|organism=Nannochloropsis oceanica|type=polypeptide|length=468bp
MAPASATLLKWLSSGLARIEWVDKEEMTVKVEGDVVKEPNAVARAVAKAV
RPALVGVLPAEHAQVVQWQSWSTDTSDVFAAAVELNTFLEGRSFLVGTAP
TLADIQVYWALAPGVKLTFPGPLGGLVALMRWFDFMQHSLRQEAAFDATL
LPALVPLHSIYKPVSMPVYDRKKAGESPGAQEPNGKVAPAVESTKGGPVK
KGKDASPAATATSSGSAQSAGDKANKKHMQQDAEKQEKEKGDKAAGKGAS
DPTVEGGGGGAAAAAAAENPNALDIRVGRMVKVWPHPEAEKLYCEEIDCG
EEGGPRQIASGLRQFYSEAAELEGRLVLVLANLKPRKLVGFASNGMVLCA
SNDEHTEVKIVEPPAGAKVGDRVVFHGFPREGLPLTPAQVQKKKVFETLA
PGLMTDGKGVCVYKVASHPFWVGEEGGGGGALHRALDECPRVVRCDGEID
DGERGWIVFCARFAIQK*
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mRNA from alignment at scaffold_1:934386..935892-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1551 ID=mRNA_1551|Name=jgi.p|Nanoce1779_2|549366|organism=Nannochloropsis oceanica|type=mRNA|length=1507bp|location=Sequence derived from alignment at scaffold_1:934386..935892- (Nannochloropsis oceanica)
ACTGCTCATCACCACACGACGCCTCTCCCTACGCCCTTTTCACGCATCCA
CTTTCTCTCATATTATCCGATACAGGCAGCACTCTCGGCACAACCTAGCT
GTCATGGCTCCGGCATCCGCGACCCTGCTGAAGTGGTTGTCCTCGGGACT
TGCTAGAATTGAGTGGGTGGATAAGGAAGAAATGACGGTCAAGGTCGAGG
GGGATGTGGTCAAGGAGCCGAATGCCGTCGCCCGTGCAGTGGCCAAGGCA
GTACGCCCGGCCCTCGTGGGTGTTCTGCCGGCGGAGCATGCACAGGTGGT
GCAATGGCAGTCCTGGTCGACCGATACATCGGACGTTTTCGCTGCGGCAG
TCGAACTCAACACGTTCCTGGAGGGCCGTTCATTCCTGGTGGGCACGGCG
CCAACCCTGGCGGATATTCAAGTGTACTGGGCCTTGGCACCGGGCGTGAA
GCTCACGTTTCCTGGCCCACTGGGTGGGTTGGTGGCCTTAATGCGTTGGT
TTGATTTTATGCAGCACTCATTGCGACAAGAAGCTGCTTTTGACGCGACT
CTCCTCCCCGCTCTCGTCCCGCTCCATTCCATTTACAAACCTGTTTCAAT
GCCTGTATATGACAGAAAGAAGGCGGGAGAGAGCCCGGGAGCACAGGAAC
CGAATGGAAAAGTCGCGCCCGCGGTAGAAAGTACCAAGGGGGGGCCTGTG
AAGAAGGGCAAAGATGCCTCTCCTGCAGCCACCGCCACATCTTCTGGCAG
TGCCCAAAGTGCGGGCGACAAGGCGAATAAGAAACATATGCAGCAGGACG
CTGAAAAGCAGGAAAAGGAGAAGGGCGACAAAGCTGCGGGGAAGGGTGCG
TCTGACCCGACAGTCGAAGGAGGAGGAGGAGGAGCAGCAGCAGCAGCAGC
AGCAGAGAATCCAAACGCTCTTGACATCCGTGTGGGTAGAATGGTCAAAG
TGTGGCCGCATCCTGAAGCTGAGAAACTCTATTGCGAGGAGATTGATTGT
GGGGAGGAGGGTGGGCCGCGACAGATTGCGTCGGGGTTACGTCAGTTTTA
TTCAGAGGCTGCGGAGCTCGAGGGACGGTTGGTGTTGGTCTTGGCGAACC
TGAAACCGAGAAAATTGGTCGGATTTGCCAGTAATGGCATGGTGTTGTGC
GCATCAAATGATGAGCATACAGAGGTGAAGATTGTGGAGCCTCCGGCTGG
TGCCAAGGTGGGGGATCGCGTTGTGTTCCATGGCTTTCCTAGGGAGGGCT
TGCCATTGACGCCCGCGCAAGTGCAGAAGAAGAAGGTGTTTGAGACGTTG
GCACCGGGGTTGATGACGGATGGAAAGGGGGTGTGTGTGTATAAGGTGGC
GAGCCATCCGTTTTGGGTGGGGGAGGAGGGGGGGGGGGGGGGGGCCTTGC
ACCGCGCCCTTGACGAATGCCCACGTGTCGTGAGGTGTGACGGCGAGATT
GATGACGGTGAGCGGGGGTGGATAGTCTTTTGCGCTAGGTTTGCAATTCA
AAAGTAG
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Coding sequence (CDS) from alignment at scaffold_1:934386..935892-

>mRNA_1551 ID=mRNA_1551|Name=jgi.p|Nanoce1779_2|549366|organism=Nannochloropsis oceanica|type=CDS|length=1404bp|location=Sequence derived from alignment at scaffold_1:934386..935892- (Nannochloropsis oceanica)
ATGGCTCCGGCATCCGCGACCCTGCTGAAGTGGTTGTCCTCGGGACTTGC
TAGAATTGAGTGGGTGGATAAGGAAGAAATGACGGTCAAGGTCGAGGGGG
ATGTGGTCAAGGAGCCGAATGCCGTCGCCCGTGCAGTGGCCAAGGCAGTA
CGCCCGGCCCTCGTGGGTGTTCTGCCGGCGGAGCATGCACAGGTGGTGCA
ATGGCAGTCCTGGTCGACCGATACATCGGACGTTTTCGCTGCGGCAGTCG
AACTCAACACGTTCCTGGAGGGCCGTTCATTCCTGGTGGGCACGGCGCCA
ACCCTGGCGGATATTCAAGTGTACTGGGCCTTGGCACCGGGCGTGAAGCT
CACGTTTCCTGGCCCACTGGGTGGGTTGGTGGCCTTAATGCGTTGGTTTG
ATTTTATGCAGCACTCATTGCGACAAGAAGCTGCTTTTGACGCGACTCTC
CTCCCCGCTCTCGTCCCGCTCCATTCCATTTACAAACCTGTTTCAATGCC
TGTATATGACAGAAAGAAGGCGGGAGAGAGCCCGGGAGCACAGGAACCGA
ATGGAAAAGTCGCGCCCGCGGTAGAAAGTACCAAGGGGGGGCCTGTGAAG
AAGGGCAAAGATGCCTCTCCTGCAGCCACCGCCACATCTTCTGGCAGTGC
CCAAAGTGCGGGCGACAAGGCGAATAAGAAACATATGCAGCAGGACGCTG
AAAAGCAGGAAAAGGAGAAGGGCGACAAAGCTGCGGGGAAGGGTGCGTCT
GACCCGACAGTCGAAGGAGGAGGAGGAGGAGCAGCAGCAGCAGCAGCAGC
AGAGAATCCAAACGCTCTTGACATCCGTGTGGGTAGAATGGTCAAAGTGT
GGCCGCATCCTGAAGCTGAGAAACTCTATTGCGAGGAGATTGATTGTGGG
GAGGAGGGTGGGCCGCGACAGATTGCGTCGGGGTTACGTCAGTTTTATTC
AGAGGCTGCGGAGCTCGAGGGACGGTTGGTGTTGGTCTTGGCGAACCTGA
AACCGAGAAAATTGGTCGGATTTGCCAGTAATGGCATGGTGTTGTGCGCA
TCAAATGATGAGCATACAGAGGTGAAGATTGTGGAGCCTCCGGCTGGTGC
CAAGGTGGGGGATCGCGTTGTGTTCCATGGCTTTCCTAGGGAGGGCTTGC
CATTGACGCCCGCGCAAGTGCAGAAGAAGAAGGTGTTTGAGACGTTGGCA
CCGGGGTTGATGACGGATGGAAAGGGGGTGTGTGTGTATAAGGTGGCGAG
CCATCCGTTTTGGGTGGGGGAGGAGGGGGGGGGGGGGGGGGCCTTGCACC
GCGCCCTTGACGAATGCCCACGTGTCGTGAGGTGTGACGGCGAGATTGAT
GACGGTGAGCGGGGGTGGATAGTCTTTTGCGCTAGGTTTGCAATTCAAAA
GTAG
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Synonyms
Publications