jgi.p|Nanoce1779_2|572662, mRNA_1550 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|572662
Unique NamemRNA_1550
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1272
Alignment locationscaffold_1:933079..934350 +

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Properties
Property NameValue
TranscriptId572748
TrackFilteredModels2
ProteinId572662
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:933079..934350 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572662gene_1550Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572662mRNA_1550-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1550CDS_1550Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1550 ID=mRNA_1550|Name=jgi.p|Nanoce1779_2|572662|organism=Nannochloropsis oceanica|type=mRNA|length=1272bp
ACAGGAAAATCCCCTCACACAACTCACCCACACAGGCTTGGTCTACCTAG
CTAGCCATATGGGATTGTCTTCGTTGTCGTCTTTGCCTTCTGTTCAAACA
CTTTCTGCCGCCTGCCGTCTACGAGTCGCCTCGTCAATCTCAGCCTCCGT
GTCCTCCTTGCGCCGCCCACGTCCCAGCAGTGCGGCCTTAAGTGTGCTCT
ACACCGCTTGCATTTTTAGCCTCAACGCCTACACAACCGGCAGCGCCGCT
GTTTCTCCTTCCAGAACCTCCTCGTCGTCGTCGCCGGGCTTCGCGTGCCA
GAGTGGCACAGTCTTCTTTTCTTCCTCCTCCGCTTCTTCCTCTGCCTCCG
CTTGCTCTACTCGGCGGCACCTCATGACTCGCGGCAGCAGCAGCAGTAGC
AACGGCAATGGCGGAAGCATTGCTACTATTAAGGGTATGACCAGCAGTTT
GAGCTGTAGCAGCCTTGATCAGCCCGTAGAGGGGTTGGCGATGCGTCGAC
CTCTCATTATTACCGGCCCCTCGGGCGTGGGCAAAGGGACACTTATCCGC
CGTTTGCTGGGGGAATATCCTGCGCGCTTTGGGTTTTCCTGCAGCCATAC
CACTCGGGGACCCCGTCCAGGGGAACAACATGGAATCGATTACTTTTTTA
CGACCCGGGAGAAATTACAAGCGGAGATTGATGAGGGCAAGTTTTTGGAG
CATGCAACCGTCCATAACAACTTGTATGGGACGAGCTTTGACGCTGTGAG
GGAGGTACAAGACGATGGAAAGATTTGTGTGTTGGACATTGATGTGCAGG
GTGTGTTGTCGGTAAAAAAGGCGGCGGCAATGGGGTTGGTGCATGACTTA
AGGCCGATTTACGTTTTTATTTCCCCTCCGTCGTTGGAGGTGTTGGAGAA
GAGGCTGCGGGGCAGAGAGACAGAAAAGGAGGAGGATGTCCTGCGTAGGC
TTGGGAATGCAAGGAGAGAGCTAGAGTATGGGTGTGCCAAGGGGAATTTC
GATAAGATTGTGGTGAATGGAGAGTTCGACGAGGCGTATAGGGATTTAGT
TGGGTATATTGAGAGAATGTATTATGGTGAAGAGGGCGTAGAGGAACAAA
AGTAGTGGTGATGGGGATAGTTAAAAATAAACAGAACGAGAAATTACAGT
GGTGTGGAGGGAAAGTTATGATGTGAAGGAATGCAGCAGCCTCAAGATGG
AAGGAGCGCACCCGCAACAAAAAACAACAAACACTGTTACAAACAGCAAC
GACAGCAGCAACATGCAACAAA
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protein sequence of jgi.p|Nanoce1779_2|572662

>mRNA_1550-protein ID=mRNA_1550-protein|Name=jgi.p|Nanoce1779_2|572662|organism=Nannochloropsis oceanica|type=polypeptide|length=349bp
MGLSSLSSLPSVQTLSAACRLRVASSISASVSSLRRPRPSSAALSVLYTA
CIFSLNAYTTGSAAVSPSRTSSSSSPGFACQSGTVFFSSSSASSSASACS
TRRHLMTRGSSSSSNGNGGSIATIKGMTSSLSCSSLDQPVEGLAMRRPLI
ITGPSGVGKGTLIRRLLGEYPARFGFSCSHTTRGPRPGEQHGIDYFFTTR
EKLQAEIDEGKFLEHATVHNNLYGTSFDAVREVQDDGKICVLDIDVQGVL
SVKKAAAMGLVHDLRPIYVFISPPSLEVLEKRLRGRETEKEEDVLRRLGN
ARRELEYGCAKGNFDKIVVNGEFDEAYRDLVGYIERMYYGEEGVEEQK*
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mRNA from alignment at scaffold_1:933079..934350+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1550 ID=mRNA_1550|Name=jgi.p|Nanoce1779_2|572662|organism=Nannochloropsis oceanica|type=mRNA|length=1272bp|location=Sequence derived from alignment at scaffold_1:933079..934350+ (Nannochloropsis oceanica)
ACAGGAAAATCCCCTCACACAACTCACCCACACAGGCTTGGTCTACCTAG
CTAGCCATATGGGATTGTCTTCGTTGTCGTCTTTGCCTTCTGTTCAAACA
CTTTCTGCCGCCTGCCGTCTACGAGTCGCCTCGTCAATCTCAGCCTCCGT
GTCCTCCTTGCGCCGCCCACGTCCCAGCAGTGCGGCCTTAAGTGTGCTCT
ACACCGCTTGCATTTTTAGCCTCAACGCCTACACAACCGGCAGCGCCGCT
GTTTCTCCTTCCAGAACCTCCTCGTCGTCGTCGCCGGGCTTCGCGTGCCA
GAGTGGCACAGTCTTCTTTTCTTCCTCCTCCGCTTCTTCCTCTGCCTCCG
CTTGCTCTACTCGGCGGCACCTCATGACTCGCGGCAGCAGCAGCAGTAGC
AACGGCAATGGCGGAAGCATTGCTACTATTAAGGGTATGACCAGCAGTTT
GAGCTGTAGCAGCCTTGATCAGCCCGTAGAGGGGTTGGCGATGCGTCGAC
CTCTCATTATTACCGGCCCCTCGGGCGTGGGCAAAGGGACACTTATCCGC
CGTTTGCTGGGGGAATATCCTGCGCGCTTTGGGTTTTCCTGCAGCCATAC
CACTCGGGGACCCCGTCCAGGGGAACAACATGGAATCGATTACTTTTTTA
CGACCCGGGAGAAATTACAAGCGGAGATTGATGAGGGCAAGTTTTTGGAG
CATGCAACCGTCCATAACAACTTGTATGGGACGAGCTTTGACGCTGTGAG
GGAGGTACAAGACGATGGAAAGATTTGTGTGTTGGACATTGATGTGCAGG
GTGTGTTGTCGGTAAAAAAGGCGGCGGCAATGGGGTTGGTGCATGACTTA
AGGCCGATTTACGTTTTTATTTCCCCTCCGTCGTTGGAGGTGTTGGAGAA
GAGGCTGCGGGGCAGAGAGACAGAAAAGGAGGAGGATGTCCTGCGTAGGC
TTGGGAATGCAAGGAGAGAGCTAGAGTATGGGTGTGCCAAGGGGAATTTC
GATAAGATTGTGGTGAATGGAGAGTTCGACGAGGCGTATAGGGATTTAGT
TGGGTATATTGAGAGAATGTATTATGGTGAAGAGGGCGTAGAGGAACAAA
AGTAGTGGTGATGGGGATAGTTAAAAATAAACAGAACGAGAAATTACAGT
GGTGTGGAGGGAAAGTTATGATGTGAAGGAATGCAGCAGCCTCAAGATGG
AAGGAGCGCACCCGCAACAAAAAACAACAAACACTGTTACAAACAGCAAC
GACAGCAGCAACATGCAACAAA
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Coding sequence (CDS) from alignment at scaffold_1:933079..934350+

>mRNA_1550 ID=mRNA_1550|Name=jgi.p|Nanoce1779_2|572662|organism=Nannochloropsis oceanica|type=CDS|length=1047bp|location=Sequence derived from alignment at scaffold_1:933079..934350+ (Nannochloropsis oceanica)
ATGGGATTGTCTTCGTTGTCGTCTTTGCCTTCTGTTCAAACACTTTCTGC
CGCCTGCCGTCTACGAGTCGCCTCGTCAATCTCAGCCTCCGTGTCCTCCT
TGCGCCGCCCACGTCCCAGCAGTGCGGCCTTAAGTGTGCTCTACACCGCT
TGCATTTTTAGCCTCAACGCCTACACAACCGGCAGCGCCGCTGTTTCTCC
TTCCAGAACCTCCTCGTCGTCGTCGCCGGGCTTCGCGTGCCAGAGTGGCA
CAGTCTTCTTTTCTTCCTCCTCCGCTTCTTCCTCTGCCTCCGCTTGCTCT
ACTCGGCGGCACCTCATGACTCGCGGCAGCAGCAGCAGTAGCAACGGCAA
TGGCGGAAGCATTGCTACTATTAAGGGTATGACCAGCAGTTTGAGCTGTA
GCAGCCTTGATCAGCCCGTAGAGGGGTTGGCGATGCGTCGACCTCTCATT
ATTACCGGCCCCTCGGGCGTGGGCAAAGGGACACTTATCCGCCGTTTGCT
GGGGGAATATCCTGCGCGCTTTGGGTTTTCCTGCAGCCATACCACTCGGG
GACCCCGTCCAGGGGAACAACATGGAATCGATTACTTTTTTACGACCCGG
GAGAAATTACAAGCGGAGATTGATGAGGGCAAGTTTTTGGAGCATGCAAC
CGTCCATAACAACTTGTATGGGACGAGCTTTGACGCTGTGAGGGAGGTAC
AAGACGATGGAAAGATTTGTGTGTTGGACATTGATGTGCAGGGTGTGTTG
TCGGTAAAAAAGGCGGCGGCAATGGGGTTGGTGCATGACTTAAGGCCGAT
TTACGTTTTTATTTCCCCTCCGTCGTTGGAGGTGTTGGAGAAGAGGCTGC
GGGGCAGAGAGACAGAAAAGGAGGAGGATGTCCTGCGTAGGCTTGGGAAT
GCAAGGAGAGAGCTAGAGTATGGGTGTGCCAAGGGGAATTTCGATAAGAT
TGTGGTGAATGGAGAGTTCGACGAGGCGTATAGGGATTTAGTTGGGTATA
TTGAGAGAATGTATTATGGTGAAGAGGGCGTAGAGGAACAAAAGTAG
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Synonyms
Publications