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Properties
| Property Name | Value |
|---|
| TranscriptId | 576475 |
| Track | FilteredModels2 |
| ProteinId | 576389 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_3 | supercontig | scaffold_3:398802..401585 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_155 ID=mRNA_155|Name=jgi.p|Nanoce1779_2|576389|organism=Nannochloropsis oceanica|type=mRNA|length=2115bp
ACAGATCAGTCGCTCGGACGCGGCAACAGCAGGTATGGCTTCATTTAAGT
TCAAGGACGCGGCCTTCACAGTGGACAGCCCTGACGTCACCTACACTGAG
GAAGAAATTCTGGCCAAGTATATGTACGAGACGGTGGTCGTCGAGGGCAC
CAAGGCAGTGCCCACCAAGGAAGTCTACACCTTCAAAACGAAGCGACAAG
TACCCAAAACGGGGCTGATGCTCGTAGGATGGGGGGGCAACAACGGAACG
ACAACCACGGCAGGAATCATTGCCAACAAAATGGGGATGACGTGGCGGAC
GAAGGAAGGGACGCACAAAGCGAATTACTTTGGGTCCCTAACCCAGGCGT
CGACTGTGCGGTTGGGGAATGATAAGTATGGGAATTCGGTCTTTGTTCCT
TTCAATCGGTTATTGCCCATGGTGCATCCGAATGATCTGGTAGTGGGAGG
GTGGGATATATCTAAATTGACGATTGGGGAGGCGATGCTCAGATCGCAGG
TGCTGGATGTGGGGTTGCAAGACCAGCTGTACCCGCATATGAAGGACATG
CGTCCGTTGCCGTCTATTTATTTCCCGGACTTCATCGCGGCGAATCAGGC
GGAGCGAGCAGACAACGTACTTACGGGGTCGAAGCAAGAGCAGCTGGAGA
TAGTGCGGGGGCACATTCGGGACTTCAAGTCCGCCCATGCCCTTGACAAA
GTCATCGTCCTTTGGACCGCCAACACCGAGCGGTTCGCTGCCATTGAGGA
AGGCAATAACGACACGGCTGATAACCTCCTGGCGGCCATCGAACGGGGGG
AGGAGGAGCTGTCCCCCTCTACTCTTTTTGCGGTCGCTTCCGTGCTGGAA
GGCTGCTCGTACATCAATGGTTCGCCTCAAAACACTTTTGTACCCGGCGT
GGTGGACTTGGCTGAGCGGCATGGTGTCTATATTGGGGGAGACGACTTCA
AAAGTGGACAGACGAAGATGAAGAGTGTCTTAGTGGACTTTTTGGTATCA
GCCGGGATAAAGCCTACATCGATCGTAAGCTATAATCATTTGGGGAACAA
CGACGGGAAAAATCTATCGGCGCCCCAAACGTTTCGTTCGAAGGAGATTT
CGAAGAGCAATGTGGTGGATGACATGGTGGCTTCGAATAGGTTGTTGTAT
GCGGAGGATGAGCACCCGGACCACGTGGTGGTCATCAAGTACGTCCCCTG
CGTGGGGGACTCGAAGCGCGCAATGGACGAGTACACCTCAGAGATATTTA
TGGGCGGGACCAACACCATCGTGATGCATAATACGTGCGAAGATTCTCTC
CTCGCAACTCCCTTGATTTACGACCTCGTGGTGCTCACCGAGCTGGCGGA
ACGCATTTCCATGCGGAGGGAAGGGAAGGAGGGAGTAGAGGGAGGGGAGT
TCGAGCCGTTTGCGAGCGTGCTTTCGTTGCTGTCATACTTGATCAAGGCC
CCTTTGGTTCCTGCAGGGACACCGGTGGTGAATGCGCTGTTTGCTCAGAG
GCAATGTATCGTGAATATTTTCAGGGCGTGTGTGGGTCTGCCCCCTGACA
ATAACATGTTGCTGGAGCACAAGCTGGCGAGTTCGATTGAGGGATTGAAA
CAAGCGAGAGAGGCGGCGATGGACGGGCCGGCCAAGAAGAAGTTAAAGAA
CTAGTAGATGCGAGATGGCAGATGGGTTGTTAGGAAGCAGGCATTGAAGG
GATCGAGGGAGGAAGGGAGTTTGCGGACCGCGTGCGGAGGTAAGGAATCT
AGGGCAGGCAGGGAGACCAAGGCATACAGGCAGACAGAGTCGCTTCAAAT
CGTTGGACCGAAGCAATGAGAATAAAGAATCTGGTGGAATGAGCGGAGAG
AGAATCAAAGGTGCAGATAGCTGATAGGTTTAGGTAAAAGTAGTGTGAAA
GAGAAAGAGAGCGAACTAGAAGAGAGATGGGCAAGCTCGAAGGATGAAGA
AGAGAAGGAGGAGGGGAAGGGAAACGAGAGAGAAACGAAGTTCTGAAAGA
CGCTTTTTGAAGAGCTCTGAAGCGTAAAGCATTTCTAGTACCTGACATTT
CTTATCCTATATCTGTGTGTGTACCGCCGCGTATGTGTATGTTTTCCCTC
CTCTTGCAGCGCGCG back to topprotein sequence of jgi.p|Nanoce1779_2|576389 >mRNA_155-protein ID=mRNA_155-protein|Name=jgi.p|Nanoce1779_2|576389|organism=Nannochloropsis oceanica|type=polypeptide|length=540bp
MASFKFKDAAFTVDSPDVTYTEEEILAKYMYETVVVEGTKAVPTKEVYTF
KTKRQVPKTGLMLVGWGGNNGTTTTAGIIANKMGMTWRTKEGTHKANYFG
SLTQASTVRLGNDKYGNSVFVPFNRLLPMVHPNDLVVGGWDISKLTIGEA
MLRSQVLDVGLQDQLYPHMKDMRPLPSIYFPDFIAANQAERADNVLTGSK
QEQLEIVRGHIRDFKSAHALDKVIVLWTANTERFAAIEEGNNDTADNLLA
AIERGEEELSPSTLFAVASVLEGCSYINGSPQNTFVPGVVDLAERHGVYI
GGDDFKSGQTKMKSVLVDFLVSAGIKPTSIVSYNHLGNNDGKNLSAPQTF
RSKEISKSNVVDDMVASNRLLYAEDEHPDHVVVIKYVPCVGDSKRAMDEY
TSEIFMGGTNTIVMHNTCEDSLLATPLIYDLVVLTELAERISMRREGKEG
VEGGEFEPFASVLSLLSYLIKAPLVPAGTPVVNALFAQRQCIVNIFRACV
GLPPDNNMLLEHKLASSIEGLKQAREAAMDGPAKKKLKN* back to topmRNA from alignment at scaffold_3:398802..401585+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_155 ID=mRNA_155|Name=jgi.p|Nanoce1779_2|576389|organism=Nannochloropsis oceanica|type=mRNA|length=2784bp|location=Sequence derived from alignment at scaffold_3:398802..401585+ (Nannochloropsis oceanica)
ACAGATCAGTCGCTCGGACGCGGCAACAGCAGGTATGGCTTCATTTAAGT
TCAAGGACGCGGCCTTCACAGTGGACAGCCCTGACGTCACCTACACTGAG
GAAGAAATTCTGGCCAAGTATATGTACGAGACGGTGGTCGTCGAGGGCAC
CAAGGTATGGGGAAAAGAGAAGCTGAAGGCGTGGAGAGAGTACGAGGAAA
GGAGGGGTTGAATTTGTTGTGCGCGGGGTCTCGAGTTTGGAGGTCGCGCT
CCTCATCGTCCACGCTTCTGGTATTAAAAGATCAAGTGCATGCAGTGCTT
GCGTGCTTGAATAGGTCGGTCGAAGGTTTGCCTATATGGTTAAGAGCAGC
TTTTGGGTGCTTCAAACGCGTCGGCTTCCATGACCTACGCTTGTGTGCTC
TTGTTACATGCATGAAGAGGAGAGGAGGAGGGAATCGCCACCTTTCGCCC
GGCACATATTCGTATCAAAGCTCACACCCACCACAATTGCTTATTTTGCA
CGATCCAGCTACCTCTCCACCCATCGTTTTTAGTCGTCCTCTCACTCTCT
CACTCTCTCCCCACGTCCCTCCTTTCTTTCTCAATCGCAGGCAGTGCCCA
CCAAGGAAGTCTACACCTTCAAAACGAAGCGACAAGTACCCAAAACGGGG
CTGATGCTCGTAGGATGGGGGGGCAACAACGGAACGACAACCACGGCAGG
AATCATTGCCAACAAAATGGGGATGACGTGGCGGACGAAGGAAGGGACGC
ACAAAGCGAATTACTTTGGGTCCCTAACCCAGGCGTCGACTGTGCGGTTG
GGGAATGATAAGTATGGGAATTCGGTCTTTGTTCCTTTCAATCGGTTATT
GCCCATGGTGCATCCGAATGATCTGGTAGTGGGAGGGTGGGATATATCTA
AATTGACGATTGGGGAGGCGATGCTCAGATCGCAGGTGCTGGATGTGGGG
TTGCAAGACCAGCTGTACCCGCATATGAAGGACATGCGTCCGTTGCCGTC
TATTTATTTCCCGGACTTCATCGCGGCGAATCAGGCGGAGCGAGCAGACA
ACGTACTTACGGGGTCGAAGCAAGAGCAGCTGGAGATAGTGCGGGGGCAC
ATTCGGGACTTCAAGTCCGCCCATGCCCTTGACAAAGTCATCGTCCTTTG
GACCGCCAACACCGAGCGGTTCGCTGCCATTGAGGAAGGCAATAACGACA
CGGCTGATAACCTCCTGGCGGCCATCGAACGGGGGGAGGAGGAGCTGTCC
CCCTCTACTCTTTTTGCGGTCGCTTCCGTGCTGGAAGGCTGCTCGTACAT
CAATGGTTCGCCTCAAAACACTTTTGTACCCGGCGTGGTGGACTTGGCTG
AGCGGCATGGTGTCTATATTGGGGGAGACGACTTCAAAAGTGGACAGACG
AAGATGAAGAGTGTCTTAGTGGACTTTTTGGTATCAGCCGGGATAAAGCC
TACATCGATCGTAAGCTATAATCATTTGGGGAACAACGACGGGAAAAATC
TATCGGCGCCCCAAACGTTTCGTTCGAAGGAGATTTCGAAGAGCAATGTG
GTGGATGACATGGTGGCTTCGAATAGGTTGTTGTATGCGGAGGATGAGCA
CCCGGACCACGTGGTGGTCATCAAGTACGTTTGAAATTTCCTACCCTCCC
TCTTTCCCTCTTTCCCTCTTTTTATTTTTTCTATTTTCCGTTCGGCCAGA
GACCAGCATTGGCGCGAGATGATGTTTCGGTGCAAAGTGTCAGTGTAAAG
TGTCAGTGTCGGTGACATTTTCGTTGTCATTATCGCCGTGACAAGGTGAC
CAAAAACTCAACCTCCCCCCTCTCATTCCCTTTCCCTCCTCCTCTCTTCC
TTTCCAGGTACGTCCCCTGCGTGGGGGACTCGAAGCGCGCAATGGACGAG
TACACCTCAGAGATATTTATGGGCGGGACCAACACCATCGTGATGCATAA
TACGTGCGAAGATTCTCTCCTCGCAACTCCCTTGATTTACGACCTCGTGG
TGCTCACCGAGCTGGCGGAACGCATTTCCATGCGGAGGGAAGGGAAGGAG
GGAGTAGAGGGAGGGGAGTTCGAGCCGTTTGCGAGCGTGCTTTCGTTGCT
GTCATACTTGATCAAGGCCCCTTTGGTTCCTGCAGGGACACCGGTGGTGA
ATGCGCTGTTTGCTCAGAGGCAATGTATCGTGAATATTTTCAGGGCGTGT
GTGGGTCTGCCCCCTGACAATAACATGTTGCTGGAGCACAAGCTGGCGAG
TTCGATTGAGGGATTGAAACAAGCGAGAGAGGCGGCGATGGACGGGCCGG
CCAAGAAGAAGTTAAAGAACTAGTAGATGCGAGATGGCAGATGGGTTGTT
AGGAAGCAGGCATTGAAGGGATCGAGGGAGGAAGGGAGTTTGCGGACCGC
GTGCGGAGGTAAGGAATCTAGGGCAGGCAGGGAGACCAAGGCATACAGGC
AGACAGAGTCGCTTCAAATCGTTGGACCGAAGCAATGAGAATAAAGAATC
TGGTGGAATGAGCGGAGAGAGAATCAAAGGTGCAGATAGCTGATAGGTTT
AGGTAAAAGTAGTGTGAAAGAGAAAGAGAGCGAACTAGAAGAGAGATGGG
CAAGCTCGAAGGATGAAGAAGAGAAGGAGGAGGGGAAGGGAAACGAGAGA
GAAACGAAGTTCTGAAAGACGCTTTTTGAAGAGCTCTGAAGCGTAAAGCA
TTTCTAGTACCTGACATTTCTTATCCTATATCTGTGTGTGTACCGCCGCG
TATGTGTATGTTTTCCCTCCTCTTGCAGCGCGCG back to topCoding sequence (CDS) from alignment at scaffold_3:398802..401585+ >mRNA_155 ID=mRNA_155|Name=jgi.p|Nanoce1779_2|576389|organism=Nannochloropsis oceanica|type=CDS|length=4860bp|location=Sequence derived from alignment at scaffold_3:398802..401585+ (Nannochloropsis oceanica)
ATGGCTTCATTTAAGTTCAAGGACGCGGCCTTCACAGTGGACAGCCCTGA
CGTCACCTACACTGAGGAAGAAATTCTGGCCAAGTATATGTACGAGACGG
TGGTCGTCGAGGGCACCAAGGCAGTGCCCACCAAGGAAGTCTACACCTTC
AAAACGAAGCGACAAGTACCCAAAACGGGGCTGATGCTCGTAGGATGGGG
GGGCAACAACGGAACGACAACCACGGCAGGAATCATTGCCAACAAAATGG
GGATGACGTGGCGGACGAAGGAAGGGACGCACAAAGCGAATTACTTTGGG
TCCCTAACCCAGGCGTCGACTGTGCGGTTGGGGAATGATAAGTATGGGAA
TTCGGTCTTTGTTCCTTTCAATCGGTTATTGCCCATGGTGCATCCGAATG
ATCTGGTAGTGGGAGGGTGGGATATATCTAAATTGACGATTGGGGAGGCG
ATGCTCAGATCGCAGGTGCTGGATGTGGGGTTGCAAGACCAGCTGTACCC
GCATATGAAGGACATGCGTCCGTTGCCGTCTATTTATTTCCCGGACTTCA
TCGCGGCGAATCAGGCGGAGCGAGCAGACAACGTACTTACGGGGTCGAAG
CAAGAGCAGCTGGAGATAGTGCGGGGGCACATTCGGGACTTCAAGTCCGC
CCATGCCCTTGACAAAGTCATCGTCCTTTGGACCGCCAACACCGAGCGGT
TCGCTGCCATTGAGGAAGGCAATAACGACACGGCTGATAACCTCCTGGCG
GCCATCGAACGGGGGGAGGAGGAGCTGTCCCCCTCTACTCTTTTTGCGGT
CGCTTCCGTGCTGGAAGGCTGCTCGTACATCAATGGTTCGCCTCAAAACA
CTTTTGTACCCGGCGTGGTGGACTTGGCTGAGCGGCATGGTGTCTATATT
GGGGGAGACGACTTCAAAAGTGGACAGACGAAGATGAAGAGTGTCTTAGT
GGACTTTTTGGTATCAGCCGGGATAAAGCCTACATCGATCGTAAGCTATA
ATCATTTGGGGAACAACGACGGGAAAAATCTATCGGCGCCCCAAACGTTT
CGTTCGAAGGAGATTTCGAAGAGCAATGTGGTGGATGACATGGTGGCTTC
GAATAGGTTGTTGTATGCGGAGGATGAGCACCCGGACCACGTGGTGGTCA
TCAAGTACGTCCCCTGCGTGGGGGACTCGAAGCGCGCAATGGACGAGTAC
ACCTCAGAGATATTTATGGGCGGGACCAACACCATCGTGATGCATAATAC
GTGCGAAGATTCTCTCCTCGCAACTCCCTTGATTTACGACCTCGTGGTGC
TCACCGAGCTGGCGGAACGCATTTCCATGCGGAGGGAAGGGAAGGAGGGA
GTAGAGGGAGGGGAGTTCGAGCCGTTTGCGAGCGTGCTTTCGTTGCTGTC
ATACTTGATCAAGGCCCCTTTGGTTCCTGCAGGGACACCGGTGGTGAATG
CGCTGTTTGCTCAGAGGCAATGTATCGTGAATATTTTCAGGGCGTGTGTG
GGTCTGCCCCCTGACAATAACATGTTGCTGGAGCACAAGCTGGCGAGTTC
GATTGAGGGATTGAAACAAGCGAGAGAGGCGGCGATGGACGGGCCGGCCA
AGAAGAAGTTAAAGAACTAGATGGCTTCATTTAAGTTCAAGGACGCGGCC
TTCACAGTGGACAGCCCTGACGTCACCTACACTGAGGAAGAAATTCTGGC
CAAGTATATGTACGAGACGGTGGTCGTCGAGGGCACCAAGGCAGTGCCCA
CCAAGGAAGTCTACACCTTCAAAACGAAGCGACAAGTACCCAAAACGGGG
CTGATGCTCGTAGGATGGGGGGGCAACAACGGAACGACAACCACGGCAGG
AATCATTGCCAACAAAATGGGGATGACGTGGCGGACGAAGGAAGGGACGC
ACAAAGCGAATTACTTTGGGTCCCTAACCCAGGCGTCGACTGTGCGGTTG
GGGAATGATAAGTATGGGAATTCGGTCTTTGTTCCTTTCAATCGGTTATT
GCCCATGGTGCATCCGAATGATCTGGTAGTGGGAGGGTGGGATATATCTA
AATTGACGATTGGGGAGGCGATGCTCAGATCGCAGGTGCTGGATGTGGGG
TTGCAAGACCAGCTGTACCCGCATATGAAGGACATGCGTCCGTTGCCGTC
TATTTATTTCCCGGACTTCATCGCGGCGAATCAGGCGGAGCGAGCAGACA
ACGTACTTACGGGGTCGAAGCAAGAGCAGCTGGAGATAGTGCGGGGGCAC
ATTCGGGACTTCAAGTCCGCCCATGCCCTTGACAAAGTCATCGTCCTTTG
GACCGCCAACACCGAGCGGTTCGCTGCCATTGAGGAAGGCAATAACGACA
CGGCTGATAACCTCCTGGCGGCCATCGAACGGGGGGAGGAGGAGCTGTCC
CCCTCTACTCTTTTTGCGGTCGCTTCCGTGCTGGAAGGCTGCTCGTACAT
CAATGGTTCGCCTCAAAACACTTTTGTACCCGGCGTGGTGGACTTGGCTG
AGCGGCATGGTGTCTATATTGGGGGAGACGACTTCAAAAGTGGACAGACG
AAGATGAAGAGTGTCTTAGTGGACTTTTTGGTATCAGCCGGGATAAAGCC
TACATCGATCGTAAGCTATAATCATTTGGGGAACAACGACGGGAAAAATC
TATCGGCGCCCCAAACGTTTCGTTCGAAGGAGATTTCGAAGAGCAATGTG
GTGGATGACATGGTGGCTTCGAATAGGTTGTTGTATGCGGAGGATGAGCA
CCCGGACCACGTGGTGGTCATCAAGTACGTCCCCTGCGTGGGGGACTCGA
AGCGCGCAATGGACGAGTACACCTCAGAGATATTTATGGGCGGGACCAAC
ACCATCGTGATGCATAATACGTGCGAAGATTCTCTCCTCGCAACTCCCTT
GATTTACGACCTCGTGGTGCTCACCGAGCTGGCGGAACGCATTTCCATGC
GGAGGGAAGGGAAGGAGGGAGTAGAGGGAGGGGAGTTCGAGCCGTTTGCG
AGCGTGCTTTCGTTGCTGTCATACTTGATCAAGGCCCCTTTGGTTCCTGC
AGGGACACCGGTGGTGAATGCGCTGTTTGCTCAGAGGCAATGTATCGTGA
ATATTTTCAGGGCGTGTGTGGGTCTGCCCCCTGACAATAACATGTTGCTG
GAGCACAAGCTGGCGAGTTCGATTGAGGGATTGAAACAAGCGAGAGAGGC
GGCGATGGACGGGCCGGCCAAGAAGAAGTTAAAGAACTAGATGGCTTCAT
TTAAGTTCAAGGACGCGGCCTTCACAGTGGACAGCCCTGACGTCACCTAC
ACTGAGGAAGAAATTCTGGCCAAGTATATGTACGAGACGGTGGTCGTCGA
GGGCACCAAGGCAGTGCCCACCAAGGAAGTCTACACCTTCAAAACGAAGC
GACAAGTACCCAAAACGGGGCTGATGCTCGTAGGATGGGGGGGCAACAAC
GGAACGACAACCACGGCAGGAATCATTGCCAACAAAATGGGGATGACGTG
GCGGACGAAGGAAGGGACGCACAAAGCGAATTACTTTGGGTCCCTAACCC
AGGCGTCGACTGTGCGGTTGGGGAATGATAAGTATGGGAATTCGGTCTTT
GTTCCTTTCAATCGGTTATTGCCCATGGTGCATCCGAATGATCTGGTAGT
GGGAGGGTGGGATATATCTAAATTGACGATTGGGGAGGCGATGCTCAGAT
CGCAGGTGCTGGATGTGGGGTTGCAAGACCAGCTGTACCCGCATATGAAG
GACATGCGTCCGTTGCCGTCTATTTATTTCCCGGACTTCATCGCGGCGAA
TCAGGCGGAGCGAGCAGACAACGTACTTACGGGGTCGAAGCAAGAGCAGC
TGGAGATAGTGCGGGGGCACATTCGGGACTTCAAGTCCGCCCATGCCCTT
GACAAAGTCATCGTCCTTTGGACCGCCAACACCGAGCGGTTCGCTGCCAT
TGAGGAAGGCAATAACGACACGGCTGATAACCTCCTGGCGGCCATCGAAC
GGGGGGAGGAGGAGCTGTCCCCCTCTACTCTTTTTGCGGTCGCTTCCGTG
CTGGAAGGCTGCTCGTACATCAATGGTTCGCCTCAAAACACTTTTGTACC
CGGCGTGGTGGACTTGGCTGAGCGGCATGGTGTCTATATTGGGGGAGACG
ACTTCAAAAGTGGACAGACGAAGATGAAGAGTGTCTTAGTGGACTTTTTG
GTATCAGCCGGGATAAAGCCTACATCGATCGTAAGCTATAATCATTTGGG
GAACAACGACGGGAAAAATCTATCGGCGCCCCAAACGTTTCGTTCGAAGG
AGATTTCGAAGAGCAATGTGGTGGATGACATGGTGGCTTCGAATAGGTTG
TTGTATGCGGAGGATGAGCACCCGGACCACGTGGTGGTCATCAAGTACGT
CCCCTGCGTGGGGGACTCGAAGCGCGCAATGGACGAGTACACCTCAGAGA
TATTTATGGGCGGGACCAACACCATCGTGATGCATAATACGTGCGAAGAT
TCTCTCCTCGCAACTCCCTTGATTTACGACCTCGTGGTGCTCACCGAGCT
GGCGGAACGCATTTCCATGCGGAGGGAAGGGAAGGAGGGAGTAGAGGGAG
GGGAGTTCGAGCCGTTTGCGAGCGTGCTTTCGTTGCTGTCATACTTGATC
AAGGCCCCTTTGGTTCCTGCAGGGACACCGGTGGTGAATGCGCTGTTTGC
TCAGAGGCAATGTATCGTGAATATTTTCAGGGCGTGTGTGGGTCTGCCCC
CTGACAATAACATGTTGCTGGAGCACAAGCTGGCGAGTTCGATTGAGGGA
TTGAAACAAGCGAGAGAGGCGGCGATGGACGGGCCGGCCAAGAAGAAGTT
AAAGAACTAG back to top
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