jgi.p|Nanoce1779_2|635753, mRNA_1545 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|635753
Unique NamemRNA_1545
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length804
Alignment locationscaffold_1:918280..919083 -

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Properties
Property NameValue
TranscriptId635839
TrackFilteredModels2
ProteinId635753
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:918280..919083 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|635753gene_1545Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1545CDS_1545Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|635753mRNA_1545-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1545 ID=mRNA_1545|Name=jgi.p|Nanoce1779_2|635753|organism=Nannochloropsis oceanica|type=mRNA|length=804bp
ATGCAGCTGCATCGCCTGTATGGCAGCAGTGGTGACATTATTGGGTTCCG
TCCTGGGGATGGTAAGGAAGGCATTGAAGCCCACGAAAAAGCCATGAAAA
ACTTTGAGCTTGAAGTCGTGCATGACGATGCGGACATCATCGTTGTTAAT
AAACCGGCCGGGGCTTTGTGTGTACCTGGGCGCTTCATTCAAGACTCGTT
GGTAGTACGTGTTGCAGCCCACTTTGGCATCAAAGACTTTACGCGCATGG
TCGTCCATCGCTTGGACCAAGGCACTTCAGGCGTACTCGTCTTAGCTAAG
AACGATGTTGCCCTTAAAAATCTACACATGCAGCTCCGACCGGAAGCCAG
GAATCTGACGGCGGGCGGGGACGGAGGGATGCAAAAAAAGTACGTGGCCG
TGGTGGAAGGCGATGACCTGTATCCTATCAATGGGCAAATCAACCTTCCC
TTGAGCAAGGATATGGACAATCCACCCAAACAAATGGTGGACAAGATGAC
AGGTAAGCCCTCTTTGACTGAGTACACGATTCGAAGCCGTGGCGCTGACA
GCAGTTTGGTTGAGCTGCGGCCTATCACAGGAAGGACGCACCAGTTACGC
GTGCACCTCAGTTGCATTGGCCATCCTATCTTAGGGGATCCCTTTTACGC
CTCACTGAGAGTACAAAACAAGGCACCGGGTGGACGGTTATGTTTGCACG
CGGAGTCATTGGCTTTCAGGCATCCAACGACACAGGAGCGGGTGAGTTTC
TCGACGCAGTATCCTAAGGTGTGGGACGAGGGAATGGTGAGTGTGATGAT
ATAA
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protein sequence of jgi.p|Nanoce1779_2|635753

>mRNA_1545-protein ID=mRNA_1545-protein|Name=jgi.p|Nanoce1779_2|635753|organism=Nannochloropsis oceanica|type=polypeptide|length=268bp
MQLHRLYGSSGDIIGFRPGDGKEGIEAHEKAMKNFELEVVHDDADIIVVN
KPAGALCVPGRFIQDSLVVRVAAHFGIKDFTRMVVHRLDQGTSGVLVLAK
NDVALKNLHMQLRPEARNLTAGGDGGMQKKYVAVVEGDDLYPINGQINLP
LSKDMDNPPKQMVDKMTGKPSLTEYTIRSRGADSSLVELRPITGRTHQLR
VHLSCIGHPILGDPFYASLRVQNKAPGGRLCLHAESLAFRHPTTQERVSF
STQYPKVWDEGMVSVMI*
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mRNA from alignment at scaffold_1:918280..919083-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1545 ID=mRNA_1545|Name=jgi.p|Nanoce1779_2|635753|organism=Nannochloropsis oceanica|type=mRNA|length=804bp|location=Sequence derived from alignment at scaffold_1:918280..919083- (Nannochloropsis oceanica)
ATGCAGCTGCATCGCCTGTATGGCAGCAGTGGTGACATTATTGGGTTCCG
TCCTGGGGATGGTAAGGAAGGCATTGAAGCCCACGAAAAAGCCATGAAAA
ACTTTGAGCTTGAAGTCGTGCATGACGATGCGGACATCATCGTTGTTAAT
AAACCGGCCGGGGCTTTGTGTGTACCTGGGCGCTTCATTCAAGACTCGTT
GGTAGTACGTGTTGCAGCCCACTTTGGCATCAAAGACTTTACGCGCATGG
TCGTCCATCGCTTGGACCAAGGCACTTCAGGCGTACTCGTCTTAGCTAAG
AACGATGTTGCCCTTAAAAATCTACACATGCAGCTCCGACCGGAAGCCAG
GAATCTGACGGCGGGCGGGGACGGAGGGATGCAAAAAAAGTACGTGGCCG
TGGTGGAAGGCGATGACCTGTATCCTATCAATGGGCAAATCAACCTTCCC
TTGAGCAAGGATATGGACAATCCACCCAAACAAATGGTGGACAAGATGAC
AGGTAAGCCCTCTTTGACTGAGTACACGATTCGAAGCCGTGGCGCTGACA
GCAGTTTGGTTGAGCTGCGGCCTATCACAGGAAGGACGCACCAGTTACGC
GTGCACCTCAGTTGCATTGGCCATCCTATCTTAGGGGATCCCTTTTACGC
CTCACTGAGAGTACAAAACAAGGCACCGGGTGGACGGTTATGTTTGCACG
CGGAGTCATTGGCTTTCAGGCATCCAACGACACAGGAGCGGGTGAGTTTC
TCGACGCAGTATCCTAAGGTGTGGGACGAGGGAATGGTGAGTGTGATGAT
ATAA
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Coding sequence (CDS) from alignment at scaffold_1:918280..919083-

>mRNA_1545 ID=mRNA_1545|Name=jgi.p|Nanoce1779_2|635753|organism=Nannochloropsis oceanica|type=CDS|length=804bp|location=Sequence derived from alignment at scaffold_1:918280..919083- (Nannochloropsis oceanica)
ATGCAGCTGCATCGCCTGTATGGCAGCAGTGGTGACATTATTGGGTTCCG
TCCTGGGGATGGTAAGGAAGGCATTGAAGCCCACGAAAAAGCCATGAAAA
ACTTTGAGCTTGAAGTCGTGCATGACGATGCGGACATCATCGTTGTTAAT
AAACCGGCCGGGGCTTTGTGTGTACCTGGGCGCTTCATTCAAGACTCGTT
GGTAGTACGTGTTGCAGCCCACTTTGGCATCAAAGACTTTACGCGCATGG
TCGTCCATCGCTTGGACCAAGGCACTTCAGGCGTACTCGTCTTAGCTAAG
AACGATGTTGCCCTTAAAAATCTACACATGCAGCTCCGACCGGAAGCCAG
GAATCTGACGGCGGGCGGGGACGGAGGGATGCAAAAAAAGTACGTGGCCG
TGGTGGAAGGCGATGACCTGTATCCTATCAATGGGCAAATCAACCTTCCC
TTGAGCAAGGATATGGACAATCCACCCAAACAAATGGTGGACAAGATGAC
AGGTAAGCCCTCTTTGACTGAGTACACGATTCGAAGCCGTGGCGCTGACA
GCAGTTTGGTTGAGCTGCGGCCTATCACAGGAAGGACGCACCAGTTACGC
GTGCACCTCAGTTGCATTGGCCATCCTATCTTAGGGGATCCCTTTTACGC
CTCACTGAGAGTACAAAACAAGGCACCGGGTGGACGGTTATGTTTGCACG
CGGAGTCATTGGCTTTCAGGCATCCAACGACACAGGAGCGGGTGAGTTTC
TCGACGCAGTATCCTAAGGTGTGGGACGAGGGAATGGTGAGTGTGATGAT
ATAA
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Synonyms
Publications