|
|
Properties
| Property Name | Value |
|---|
| TranscriptId | 572735 |
| Track | FilteredModels2 |
| ProteinId | 572649 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_1 | supercontig | scaffold_1:916501..918039 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_1544 ID=mRNA_1544|Name=jgi.p|Nanoce1779_2|572649|organism=Nannochloropsis oceanica|type=mRNA|length=1135bp
ACAGACATCCTACTGCAATCCATTTCCACGGCACAGGGCTCTCCAGCCGC
GGTCCTCCCATAGATAGCACCCCATAACAACCATGCCTCACGCGCCCCAA
ATCTTCGAAGAAATGCGCGAGGCCGTTCAAGAAATCGGTCCGGCCCTAAA
GAAAAAGTTCACGGGCATCGTTCGCTTTGAGATCACTAACGTCGGCACCT
GGACTCTGGATTTGAAAAGCGGGGACGGCACAGTCATTACCGGGGAAGGG
AGCGTAAAACCCGATCTGGTCATCAAGGTCGCTGATGATGATTTCGCGTC
TTTGTACGAAGGGAAAAGCAATGCTCAACAGGCATTCATGAAAGGGAAGC
TCAAAGTAAAGGGCAATATGAGCCTAGCTATGAAATTCAACCAGGTTCTG
ACAGCCACCCGCAAGCAGCTGGAGAAGGGCAAGAAGAAGAAGGCGGCAGG
TGCGGCGGCCGCGGCGATAGCCGTCTCGGCAGCGCCGAAGGCTCAGGTGG
TGTTTGACCAGCTAGCAGAGGTCTTGCCCACGAAAGGTGCAGCCTTAGTG
GCTAAAATGAAGGGAGTGATTCAGTGGGATATCAATGGAGAGAAGTGGCT
GTTGGACCTTAAGAACGGAACGGGGAGCTTGAGCAAGGGCACGGGGCCCG
CAGACCTGACGGTGACCATGGCGGATGATGTCTTCTTCGAGGTGTCACAG
GGGAACTTGAGCGCGCAGCAGGCATTCATGAAGGGACAGATTAAGATCAA
GGGAAACATGGGAATGGCTACTAAATTAGGACCTATTTTGAATGCGGCAA
AACCGACGGCGCGGATGTAAGTCAAAGGAGGTGCTAGTTGAGGAAGGGGA
GCTGGTGGGGGAAAAGAAGAAAGTAGATTTTACATCACACAAATCATAAA
AAGAAAGATGAGTGAAATAAATGGGTTTGATCGCAAATGGGCGATAGTTC
TAATTACGACGATCAGGAAGAGTCGCAGGTGTGTCATTTTGTAGAGATTG
AGAGCCATAGGGAGAAGCTGCAAAAAAGGAACAAAGGAAACAAAAAGAAG
AGGGGAAAGCAAAACCGACAAGGGAAATGAATTAAAGCATTACACATGGA
AGCAAACCCAGGCACAGGTAGCAAGCATTTCTAAA back to topprotein sequence of jgi.p|Nanoce1779_2|572649 >mRNA_1544-protein ID=mRNA_1544-protein|Name=jgi.p|Nanoce1779_2|572649|organism=Nannochloropsis oceanica|type=polypeptide|length=246bp
MPHAPQIFEEMREAVQEIGPALKKKFTGIVRFEITNVGTWTLDLKSGDGT
VITGEGSVKPDLVIKVADDDFASLYEGKSNAQQAFMKGKLKVKGNMSLAM
KFNQVLTATRKQLEKGKKKKAAGAAAAAIAVSAAPKAQVVFDQLAEVLPT
KGAALVAKMKGVIQWDINGEKWLLDLKNGTGSLSKGTGPADLTVTMADDV
FFEVSQGNLSAQQAFMKGQIKIKGNMGMATKLGPILNAAKPTARM* back to topmRNA from alignment at scaffold_1:916501..918039+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_1544 ID=mRNA_1544|Name=jgi.p|Nanoce1779_2|572649|organism=Nannochloropsis oceanica|type=mRNA|length=1539bp|location=Sequence derived from alignment at scaffold_1:916501..918039+ (Nannochloropsis oceanica)
ACAGACATCCTACTGCAATCCATTTCCACGGCACAGGGCTCTCCAGCCGC
GGTCCTCCCATAGATAGCACCCCATAACAACCATGCCTCACGCGCCCCAA
ATCTTCGAAGAAATGCGTAAGTTTAAAGATGGGGGCGGGATAATTTTGTC
TGTATCTATCTTCTTTGCTGCCTCTTGTGTCACGCTGCACAACCCCCTTC
CTTTTATTGACATAAGGCTTCTCTTCAAGGAGAACGGCTGCAGTAAAAAC
CTAGAGAAATGACACACTTTCCTAGAAGTGGTGATTGCCGAGGAAATGGA
AAGTTGATGCTCTGTTGACGGCTCTGACAATTTATCATCCTTCCATCAAC
ACAAGCATCCTTCTTCTATATAAATACATGGGGTGAAAGATTTCCAAACA
TCTATATCTCATTCTGAAAAGCATATGTAATCGTCTTCGTGGTACTTTAA
GAAAAAGATTCCTCCTCCAATCCTTTACACTTACCCGTAGCCTTCCCCCC
CCCCACGACAATTTACTCAGGCGAGGCCGTTCAAGAAATCGGTCCGGCCC
TAAAGAAAAAGTTCACGGGCATCGTTCGCTTTGAGATCACTAACGTCGGC
ACCTGGACTCTGGATTTGAAAAGCGGGGACGGCACAGTCATTACCGGGGA
AGGGAGCGTAAAACCCGATCTGGTCATCAAGGTCGCTGATGATGATTTCG
CGTCTTTGTACGAAGGGAAAAGCAATGCTCAACAGGCATTCATGAAAGGG
AAGCTCAAAGTAAAGGGCAATATGAGCCTAGCTATGAAATTCAACCAGGT
TCTGACAGCCACCCGCAAGCAGCTGGAGAAGGGCAAGAAGAAGAAGGCGG
CAGGTGCGGCGGCCGCGGCGATAGCCGTCTCGGCAGCGCCGAAGGCTCAG
GTGGTGTTTGACCAGCTAGCAGAGGTCTTGCCCACGAAAGGTGCAGCCTT
AGTGGCTAAAATGAAGGGAGTGATTCAGTGGGATATCAATGGAGAGAAGT
GGCTGTTGGACCTTAAGAACGGAACGGGGAGCTTGAGCAAGGGCACGGGG
CCCGCAGACCTGACGGTGACCATGGCGGATGATGTCTTCTTCGAGGTGTC
ACAGGGGAACTTGAGCGCGCAGCAGGCATTCATGAAGGGACAGATTAAGA
TCAAGGGAAACATGGGAATGGCTACTAAATTAGGACCTATTTTGAATGCG
GCAAAACCGACGGCGCGGATGTAAGTCAAAGGAGGTGCTAGTTGAGGAAG
GGGAGCTGGTGGGGGAAAAGAAGAAAGTAGATTTTACATCACACAAATCA
TAAAAAGAAAGATGAGTGAAATAAATGGGTTTGATCGCAAATGGGCGATA
GTTCTAATTACGACGATCAGGAAGAGTCGCAGGTGTGTCATTTTGTAGAG
ATTGAGAGCCATAGGGAGAAGCTGCAAAAAAGGAACAAAGGAAACAAAAA
GAAGAGGGGAAAGCAAAACCGACAAGGGAAATGAATTAAAGCATTACACA
TGGAAGCAAACCCAGGCACAGGTAGCAAGCATTTCTAAA back to topCoding sequence (CDS) from alignment at scaffold_1:916501..918039+ >mRNA_1544 ID=mRNA_1544|Name=jgi.p|Nanoce1779_2|572649|organism=Nannochloropsis oceanica|type=CDS|length=1476bp|location=Sequence derived from alignment at scaffold_1:916501..918039+ (Nannochloropsis oceanica)
ATGCCTCACGCGCCCCAAATCTTCGAAGAAATGCGCGAGGCCGTTCAAGA
AATCGGTCCGGCCCTAAAGAAAAAGTTCACGGGCATCGTTCGCTTTGAGA
TCACTAACGTCGGCACCTGGACTCTGGATTTGAAAAGCGGGGACGGCACA
GTCATTACCGGGGAAGGGAGCGTAAAACCCGATCTGGTCATCAAGGTCGC
TGATGATGATTTCGCGTCTTTGTACGAAGGGAAAAGCAATGCTCAACAGG
CATTCATGAAAGGGAAGCTCAAAGTAAAGGGCAATATGAGCCTAGCTATG
AAATTCAACCAGGTTCTGACAGCCACCCGCAAGCAGCTGGAGAAGGGCAA
GAAGAAGAAGGCGGCAGGTGCGGCGGCCGCGGCGATAGCCGTCTCGGCAG
CGCCGAAGGCTCAGGTGGTGTTTGACCAGCTAGCAGAGGTCTTGCCCACG
AAAGGTGCAGCCTTAGTGGCTAAAATGAAGGGAGTGATTCAGTGGGATAT
CAATGGAGAGAAGTGGCTGTTGGACCTTAAGAACGGAACGGGGAGCTTGA
GCAAGGGCACGGGGCCCGCAGACCTGACGGTGACCATGGCGGATGATGTC
TTCTTCGAGGTGTCACAGGGGAACTTGAGCGCGCAGCAGGCATTCATGAA
GGGACAGATTAAGATCAAGGGAAACATGGGAATGGCTACTAAATTAGGAC
CTATTTTGAATGCGGCAAAACCGACGGCGCGGATGTAAATGCCTCACGCG
CCCCAAATCTTCGAAGAAATGCGCGAGGCCGTTCAAGAAATCGGTCCGGC
CCTAAAGAAAAAGTTCACGGGCATCGTTCGCTTTGAGATCACTAACGTCG
GCACCTGGACTCTGGATTTGAAAAGCGGGGACGGCACAGTCATTACCGGG
GAAGGGAGCGTAAAACCCGATCTGGTCATCAAGGTCGCTGATGATGATTT
CGCGTCTTTGTACGAAGGGAAAAGCAATGCTCAACAGGCATTCATGAAAG
GGAAGCTCAAAGTAAAGGGCAATATGAGCCTAGCTATGAAATTCAACCAG
GTTCTGACAGCCACCCGCAAGCAGCTGGAGAAGGGCAAGAAGAAGAAGGC
GGCAGGTGCGGCGGCCGCGGCGATAGCCGTCTCGGCAGCGCCGAAGGCTC
AGGTGGTGTTTGACCAGCTAGCAGAGGTCTTGCCCACGAAAGGTGCAGCC
TTAGTGGCTAAAATGAAGGGAGTGATTCAGTGGGATATCAATGGAGAGAA
GTGGCTGTTGGACCTTAAGAACGGAACGGGGAGCTTGAGCAAGGGCACGG
GGCCCGCAGACCTGACGGTGACCATGGCGGATGATGTCTTCTTCGAGGTG
TCACAGGGGAACTTGAGCGCGCAGCAGGCATTCATGAAGGGACAGATTAA
GATCAAGGGAAACATGGGAATGGCTACTAAATTAGGACCTATTTTGAATG
CGGCAAAACCGACGGCGCGGATGTAA back to top
|