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Properties
| Property Name | Value |
|---|
| TranscriptId | 11128 |
| Track | FilteredModels2 |
| ProteinId | 11042 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_1 | supercontig | scaffold_1:915058..916496 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_1543 ID=mRNA_1543|Name=jgi.p|Nanoce1779_2|11042|organism=Nannochloropsis oceanica|type=mRNA|length=1439bp
GTGTGGCGCAGTGGAGTTGAAGTTGTAGGGAAGAGAATGAAAGGCAAAGC
AAAGCAGAAACCATATGGCTGCCCCTGAGCCGGGTCTTACACCACTGTAA
CTTCAAGACATCTTATGTGGTATTGTCTTGGTTGTCTGCAGGTAGTTGTC
CATGGCTCATGGCCGGTGTGCAGTGGGATAAATAGGAAGAGCCCCCTCTG
AGTGACGTGCTCGCCGAATGGCGGGTTTCGAGCGGGTTAAACGCTCATGA
TGAGGACGACCGAGGCACCACAAGGCCATTCAAGAGACGGTGTTTTGGAA
AGGCTGTACAGGACTCTCGATAAGTGGAGACGGGGCATAAATGTTCTTAT
TTTGGGAAAGCGTGCAATCAACCTCCCCTCACCATACATATCCCTTGCAG
GGAATGAATGGAGGCAACAAATGGAAAAAAGGGAGACACGCCTACTCCGA
CCACTGCAGCCACCACTACCAGCAGCAACGACAACGATACACCGCGATGC
ATCTACCGGGACACGAATGCGGTTCCTCGTAACCTCGACTCGACGACGCT
CCACCTTGGCCTCAAAGAAGGCCAAATAGCCTCCCGCATCGTCACGGTTG
GCTGCCCAAGACGTGCCGCGCTGATTACCAAGGCACTAGATAGCACGCAA
CCAATCTTTGAGCACACCTCGCCGCGTGGTTTTATTACCTATACGGGAAC
CTTTGAGGGTGTAGGCGTTTCCATTGTTGCTATTGGGATGGGTTCGCCCA
TGATGGATTTTTTTGTGCGGGAAGCCAGGCAAATTGTCGCAGGCCCCTTG
ATCATTGCCCGCTTTGGGACTTGTGGAGTGTTGCAGTCACATGTGACTGT
CGGCGGGGTCATTGTTGCATCTCCTGGCTCCGTGCTGTGCATGCGCAACC
CCGACGCCTTCTTGCCTCCCACCACCTCCACCACTACGACAAAAACGGTA
CCAACAGACGCTGTCAACGATACGGTTCACACACCTCACCAACCATATCT
GGTATTTGCACCTCAACCCTCTGATCGAGCACTATCCCATGCCTTGGTTT
CTGAACTCATCGCCGAGCTAGGTCCTGCCCGAGTTACACAAGGAATGAAC
GCCTCTGCCTGCTCCTTCTACTCTTCCCAAGGCCGAGAAGACACCCTGTT
CGACGACCGGAACATGCACGTGCTCGACACACTGCGGACCCAGCATCCTT
CGTTGTTAAGCATGGAAATGGAGACTTTTCAATTGTTTGCTTTGGCAAAC
GCCAGTCGGGGTACTGTTCGCGCGGCGGCCGCGAGTATTGGTGTCGCGAA
CCGTCCTACAGGCGATGTGTGTGAACAGTCAGTTTTCAGTTGTTTGGAAG
TTACAGGGGGCAGGGCAGTGGTAAGAGCGCTGGCGAGATTCGTGATGTAG
GGGGAAGGAGACAAGGGAGGTGCAGGTACTTGCATTGGC back to topprotein sequence of jgi.p|Nanoce1779_2|11042 >mRNA_1543-protein ID=mRNA_1543-protein|Name=jgi.p|Nanoce1779_2|11042|organism=Nannochloropsis oceanica|type=polypeptide|length=331bp
MEATNGKKGDTPTPTTAATTTSSNDNDTPRCIYRDTNAVPRNLDSTTLHL
GLKEGQIASRIVTVGCPRRAALITKALDSTQPIFEHTSPRGFITYTGTFE
GVGVSIVAIGMGSPMMDFFVREARQIVAGPLIIARFGTCGVLQSHVTVGG
VIVASPGSVLCMRNPDAFLPPTTSTTTTKTVPTDAVNDTVHTPHQPYLVF
APQPSDRALSHALVSELIAELGPARVTQGMNASACSFYSSQGREDTLFDD
RNMHVLDTLRTQHPSLLSMEMETFQLFALANASRGTVRAAAASIGVANRP
TGDVCEQSVFSCLEVTGGRAVVRALARFVM* back to topmRNA from alignment at scaffold_1:915058..916496- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_1543 ID=mRNA_1543|Name=jgi.p|Nanoce1779_2|11042|organism=Nannochloropsis oceanica|type=mRNA|length=1439bp|location=Sequence derived from alignment at scaffold_1:915058..916496- (Nannochloropsis oceanica)
GTGTGGCGCAGTGGAGTTGAAGTTGTAGGGAAGAGAATGAAAGGCAAAGC
AAAGCAGAAACCATATGGCTGCCCCTGAGCCGGGTCTTACACCACTGTAA
CTTCAAGACATCTTATGTGGTATTGTCTTGGTTGTCTGCAGGTAGTTGTC
CATGGCTCATGGCCGGTGTGCAGTGGGATAAATAGGAAGAGCCCCCTCTG
AGTGACGTGCTCGCCGAATGGCGGGTTTCGAGCGGGTTAAACGCTCATGA
TGAGGACGACCGAGGCACCACAAGGCCATTCAAGAGACGGTGTTTTGGAA
AGGCTGTACAGGACTCTCGATAAGTGGAGACGGGGCATAAATGTTCTTAT
TTTGGGAAAGCGTGCAATCAACCTCCCCTCACCATACATATCCCTTGCAG
GGAATGAATGGAGGCAACAAATGGAAAAAAGGGAGACACGCCTACTCCGA
CCACTGCAGCCACCACTACCAGCAGCAACGACAACGATACACCGCGATGC
ATCTACCGGGACACGAATGCGGTTCCTCGTAACCTCGACTCGACGACGCT
CCACCTTGGCCTCAAAGAAGGCCAAATAGCCTCCCGCATCGTCACGGTTG
GCTGCCCAAGACGTGCCGCGCTGATTACCAAGGCACTAGATAGCACGCAA
CCAATCTTTGAGCACACCTCGCCGCGTGGTTTTATTACCTATACGGGAAC
CTTTGAGGGTGTAGGCGTTTCCATTGTTGCTATTGGGATGGGTTCGCCCA
TGATGGATTTTTTTGTGCGGGAAGCCAGGCAAATTGTCGCAGGCCCCTTG
ATCATTGCCCGCTTTGGGACTTGTGGAGTGTTGCAGTCACATGTGACTGT
CGGCGGGGTCATTGTTGCATCTCCTGGCTCCGTGCTGTGCATGCGCAACC
CCGACGCCTTCTTGCCTCCCACCACCTCCACCACTACGACAAAAACGGTA
CCAACAGACGCTGTCAACGATACGGTTCACACACCTCACCAACCATATCT
GGTATTTGCACCTCAACCCTCTGATCGAGCACTATCCCATGCCTTGGTTT
CTGAACTCATCGCCGAGCTAGGTCCTGCCCGAGTTACACAAGGAATGAAC
GCCTCTGCCTGCTCCTTCTACTCTTCCCAAGGCCGAGAAGACACCCTGTT
CGACGACCGGAACATGCACGTGCTCGACACACTGCGGACCCAGCATCCTT
CGTTGTTAAGCATGGAAATGGAGACTTTTCAATTGTTTGCTTTGGCAAAC
GCCAGTCGGGGTACTGTTCGCGCGGCGGCCGCGAGTATTGGTGTCGCGAA
CCGTCCTACAGGCGATGTGTGTGAACAGTCAGTTTTCAGTTGTTTGGAAG
TTACAGGGGGCAGGGCAGTGGTAAGAGCGCTGGCGAGATTCGTGATGTAG
GGGGAAGGAGACAAGGGAGGTGCAGGTACTTGCATTGGC back to topCoding sequence (CDS) from alignment at scaffold_1:915058..916496- >mRNA_1543 ID=mRNA_1543|Name=jgi.p|Nanoce1779_2|11042|organism=Nannochloropsis oceanica|type=CDS|length=993bp|location=Sequence derived from alignment at scaffold_1:915058..916496- (Nannochloropsis oceanica)
ATGGAGGCAACAAATGGAAAAAAGGGAGACACGCCTACTCCGACCACTGC
AGCCACCACTACCAGCAGCAACGACAACGATACACCGCGATGCATCTACC
GGGACACGAATGCGGTTCCTCGTAACCTCGACTCGACGACGCTCCACCTT
GGCCTCAAAGAAGGCCAAATAGCCTCCCGCATCGTCACGGTTGGCTGCCC
AAGACGTGCCGCGCTGATTACCAAGGCACTAGATAGCACGCAACCAATCT
TTGAGCACACCTCGCCGCGTGGTTTTATTACCTATACGGGAACCTTTGAG
GGTGTAGGCGTTTCCATTGTTGCTATTGGGATGGGTTCGCCCATGATGGA
TTTTTTTGTGCGGGAAGCCAGGCAAATTGTCGCAGGCCCCTTGATCATTG
CCCGCTTTGGGACTTGTGGAGTGTTGCAGTCACATGTGACTGTCGGCGGG
GTCATTGTTGCATCTCCTGGCTCCGTGCTGTGCATGCGCAACCCCGACGC
CTTCTTGCCTCCCACCACCTCCACCACTACGACAAAAACGGTACCAACAG
ACGCTGTCAACGATACGGTTCACACACCTCACCAACCATATCTGGTATTT
GCACCTCAACCCTCTGATCGAGCACTATCCCATGCCTTGGTTTCTGAACT
CATCGCCGAGCTAGGTCCTGCCCGAGTTACACAAGGAATGAACGCCTCTG
CCTGCTCCTTCTACTCTTCCCAAGGCCGAGAAGACACCCTGTTCGACGAC
CGGAACATGCACGTGCTCGACACACTGCGGACCCAGCATCCTTCGTTGTT
AAGCATGGAAATGGAGACTTTTCAATTGTTTGCTTTGGCAAACGCCAGTC
GGGGTACTGTTCGCGCGGCGGCCGCGAGTATTGGTGTCGCGAACCGTCCT
ACAGGCGATGTGTGTGAACAGTCAGTTTTCAGTTGTTTGGAAGTTACAGG
GGGCAGGGCAGTGGTAAGAGCGCTGGCGAGATTCGTGATGTAG back to top
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