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Properties
| Property Name | Value |
| TranscriptId | 572728 |
| Track | FilteredModels2 |
| ProteinId | 572642 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
| scaffold_1 | supercontig | scaffold_1:909982..912689 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_1541 ID=mRNA_1541|Name=jgi.p|Nanoce1779_2|572642|organism=Nannochloropsis oceanica|type=mRNA|length=2470bp AGGCGCCATGCCCTCCATCTTTGGCCTGGGTGGGAGCGGCAGTGGGAGCA GCCGGAGTGGCAACGGAAGAGGGGGAAGGAGCAACGACACCGGGCCTGCT CCCGCGCCTTGTTCCACAAGCCGGGTCAGTAATGAGGAATGTGCTGCTGT CAAGTCCGCCCACCGATCTGTCAAGGTCATGGAGCCAGTTGTGGACGGCT GCAGCACAAATTTGGTTGACTTTCGACGCTCCCCCCCCCACCCCCTCGTC ACACGGACCGTGCCTGACAACCACATCCTCTTCCAGGGCTGGGTCACGGA CGAAAGGTGTATGGATGTTAAACCCAAAAGGTTCCTCGTGTTGGAGGGCA GCACCCTGAGCTTCTACCAAAATGAGGAAAACACCGGCCCCATGGTTGGA ATGGAAAATGTGGAGAAATTGAGGCTGGCTGATGACTCAGTGCTGGACTT TGTGCACGTGCCTGAGGACAAGACCAAGCTGATATTTCTTGTCAAGGGAG ATGGAGGAGGTGGAACGGAGACGAACGATAAGTCCTTCACTTTCTCCAGC AACGGCGGTCGGGACAACGACGAATGGATAGAGCACATCCAGGAGGCAAT TGAATCGATCCAGCGACAGAGCGAGCAGGAATTAGTTGGGTTTCCGCCGG GTCAGTCGTCCATCCTGTCTACTCCTAGCACGCGCAATGGCGACACGGCC ACCTGCGTGGAGCGTGGGACCCCACTAGGCTCGGACGGTCGGATGCAAAT GTCTGCCCCTTCTTTGCCGTCCAGCGAACCAGCATTTAGCCGCCCTGTAG TACCAATGTCACCATCATCACGACAACAGCCACCATCATCACTGCAAAAG CAAAGGATACCGATTGTAGAATCGTCCCTCGTCCCACTGGCCCCATTCGA GCTTTCCATCCAAAATCCTCACACCTTGCACCTTCGTTCCTCCGTCTCCT GTACCCAGCCCGTCAGCATCATTACTGCCACTCCACCACAAGCACCGCTG GCCCAGTATCCTCACCAGCCGCAACAGCAGCTGCAGCAGCATGACGCGGT TTGGACTCCTGTTCCTGTCTCGTCGTCGCAGCAACCCACTCCTTGGGGTG AGGCGGGTGACGGGGAAGGAAAACGAGCCGAGAGTGCGAGTCATTTGTCG GTCCTCCCACCCTCACCGGGAATGCTTCGTAAGGATGAGAGCAACTCAGG TTTTGGCGGCGGTGGTGAAGGGGGAATGGGGAGAGGGATGGACGAGACGA CTGCAGGGATGCTAGGGATGACTGTTCGCACTTTGGCTGCTGTCACGGGC GAGGGGGAGGAGGAAGATGAGGAGACTGAGGAGGAGGTAAAGCCTACTGA GGCAGCTTTGTCAAGAGGAGGTCTGACGATGAGCGCCTTGGAAGAGCTAG CAGGGGGAAAGCGACGGCCAAATCCAGAACGGGAAGACATGATCAGCATG GAGGAGCGGAAGCAGCGCGTGGAAGAAGGAATGCGAAGGACAGCGAGTGC TTGTCGGGCTGACGCCCGCATCAGGGTGGAAGAAACGGTTCGGAACGAGA AGTATCAAGGGTGGGTGAACATGTCGCGGCGAAAACGGTATATGGTCCTG CTCGCCCCCGAAATGCCCATAATTGCTGCAACCGCAGCTAAACCACAAAT AGAACTACAAGTAGGACCACCAACAGTATTCGTAACAGCCGCCACCTCGT CAGCATTATCCACGAGATTGCCTTCCCTCTCCACGGCAACTTTAACAGGA AAAGAGAGCTTTCCCCGCCTGGCCCTGTACTCGAACCCGAGTGACCTACG AAGTCACAAGCCACCAAAGGAGACAATAGTCCTTACAGCTGACTGCATCG TCGAGTCCCGTCGGTTGCCCATCGCCGCAACCCTTTCGAGCAGCGGTGGC ATAAGGGGCAGGGGTAGGAGCAGTAGTTGGCAGAAGACCTCATTCTCGGC CCCGTCAACCAGTACATCGCCGAGCTCGTTTTCCGAGACGCTGGAGCCGG ATACGGTCATTGACTTGCTGCTGACCAGCAGTCGGACAGGGCTCCTCAAG ACTTTAACCTTGCAGTGTTTTACGGTGGAGGAGGAGAATAGATGGATTTC GGAGTTGCAGCAGGCGATTGGCGCGTTGACGGGCGAAGAGGAGTACGAGA GCAGCCCAGGGTTCTTGGGTGGTGTGGGAAGCTTTTCTCGTGAGCTCTCG GAGCACATTTTTCCGAGTGTGTGCTGTTCTCTCTCATAAAGGTTTTGAAT AGGAATATAGAAGAATGTGAGTGCAAATTGTCATACGTAAGTATGTACAT TCGCACAAACCACTAAATCAAGCAGATTTTCACTTCTATTGCGTATGCAT TTATGCATGTGTGTTTATTTTGTAGATGTATCCGAATAAAAACAGACCAG TCAGTTTTAAGCATCTCTTGAAATTCAAAGAAACTTAATTTTGCTTGCTT CGAATCACATGCTTGCAACC back to topprotein sequence of jgi.p|Nanoce1779_2|572642 >mRNA_1541-protein ID=mRNA_1541-protein|Name=jgi.p|Nanoce1779_2|572642|organism=Nannochloropsis oceanica|type=polypeptide|length=744bp MPSIFGLGGSGSGSSRSGNGRGGRSNDTGPAPAPCSTSRVSNEECAAVKS AHRSVKVMEPVVDGCSTNLVDFRRSPPHPLVTRTVPDNHILFQGWVTDER CMDVKPKRFLVLEGSTLSFYQNEENTGPMVGMENVEKLRLADDSVLDFVH VPEDKTKLIFLVKGDGGGGTETNDKSFTFSSNGGRDNDEWIEHIQEAIES IQRQSEQELVGFPPGQSSILSTPSTRNGDTATCVERGTPLGSDGRMQMSA PSLPSSEPAFSRPVVPMSPSSRQQPPSSLQKQRIPIVESSLVPLAPFELS IQNPHTLHLRSSVSCTQPVSIITATPPQAPLAQYPHQPQQQLQQHDAVWT PVPVSSSQQPTPWGEAGDGEGKRAESASHLSVLPPSPGMLRKDESNSGFG GGGEGGMGRGMDETTAGMLGMTVRTLAAVTGEGEEEDEETEEEVKPTEAA LSRGGLTMSALEELAGGKRRPNPEREDMISMEERKQRVEEGMRRTASACR ADARIRVEETVRNEKYQGWVNMSRRKRYMVLLAPEMPIIAATAAKPQIEL QVGPPTVFVTAATSSALSTRLPSLSTATLTGKESFPRLALYSNPSDLRSH KPPKETIVLTADCIVESRRLPIAATLSSSGGIRGRGRSSSWQKTSFSAPS TSTSPSSFSETLEPDTVIDLLLTSSRTGLLKTLTLQCFTVEEENRWISEL QQAIGALTGEEEYESSPGFLGGVGSFSRELSEHIFPSVCCSLS* back to topmRNA from alignment at scaffold_1:909982..912689- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_1541 ID=mRNA_1541|Name=jgi.p|Nanoce1779_2|572642|organism=Nannochloropsis oceanica|type=mRNA|length=2708bp|location=Sequence derived from alignment at scaffold_1:909982..912689- (Nannochloropsis oceanica) AGGCGCCATGCCCTCCATCTTTGGCCTGGGTGGGAGCGGCAGTGGGAGCA
GCCGGAGTGGCAACGGAAGAGGGGGAAGGAGCAACGACACCGGGCCTGCT
CCCGCGCCTTGTTCCACAAGCCGGGTCAGTAATGAGGAATGTGCTGCTGT
CAAGTCCGCCCACCGATCTGTCAAGGTCATGGAGCCAGTTGTGGACGGCT
GCAGCACAAATTTGGTTGACTTTCGACGCTCCCCCCCCCACCCCCTCGTC
ACACGGACCGTGCCTGACAACCACATCCTCTTCCAGGGCTGGGTCACGGA
CGAAAGGTGTATGGATGTTAAACCCAAAAGGTGCATATTCTCAGTTTTTT
TATAGGATACGGGTGTGTAATGTGCATGACCCTTCAATCCACTGCATATG
CGTCGGGATCGCGTGGTCGACTGGCCCCTTCCTCGATATGGAGTCCCCGC
CATAGTGCTTTGGTCGAATTTTGTACCCTGACCTAAATGCTTCCCATGTT
CCGAATGTATTCAAAATTTGTCTTTTTCAATTACGCAACGCCTCTCTCGC
CGCTACCACCTTATACAGGTTCCTCGTGTTGGAGGGCAGCACCCTGAGCT
TCTACCAAAATGAGGAAAACACCGGCCCCATGGTTGGAATGGAAAATGTG
GAGAAATTGAGGCTGGCTGATGACTCAGTGCTGGACTTTGTGCACGTGCC
TGAGGACAAGACCAAGCTGATATTTCTTGTCAAGGGAGATGGAGGAGGTG
GAACGGAGACGAACGATAAGTCCTTCACTTTCTCCAGCAACGGCGGTCGG
GACAACGACGAATGGATAGAGCACATCCAGGAGGCAATTGAATCGATCCA
GCGACAGAGCGAGCAGGAATTAGTTGGGTTTCCGCCGGGTCAGTCGTCCA
TCCTGTCTACTCCTAGCACGCGCAATGGCGACACGGCCACCTGCGTGGAG
CGTGGGACCCCACTAGGCTCGGACGGTCGGATGCAAATGTCTGCCCCTTC
TTTGCCGTCCAGCGAACCAGCATTTAGCCGCCCTGTAGTACCAATGTCAC
CATCATCACGACAACAGCCACCATCATCACTGCAAAAGCAAAGGATACCG
ATTGTAGAATCGTCCCTCGTCCCACTGGCCCCATTCGAGCTTTCCATCCA
AAATCCTCACACCTTGCACCTTCGTTCCTCCGTCTCCTGTACCCAGCCCG
TCAGCATCATTACTGCCACTCCACCACAAGCACCGCTGGCCCAGTATCCT
CACCAGCCGCAACAGCAGCTGCAGCAGCATGACGCGGTTTGGACTCCTGT
TCCTGTCTCGTCGTCGCAGCAACCCACTCCTTGGGGTGAGGCGGGTGACG
GGGAAGGAAAACGAGCCGAGAGTGCGAGTCATTTGTCGGTCCTCCCACCC
TCACCGGGAATGCTTCGTAAGGATGAGAGCAACTCAGGTTTTGGCGGCGG
TGGTGAAGGGGGAATGGGGAGAGGGATGGACGAGACGACTGCAGGGATGC
TAGGGATGACTGTTCGCACTTTGGCTGCTGTCACGGGCGAGGGGGAGGAG
GAAGATGAGGAGACTGAGGAGGAGGTAAAGCCTACTGAGGCAGCTTTGTC
AAGAGGAGGTCTGACGATGAGCGCCTTGGAAGAGCTAGCAGGGGGAAAGC
GACGGCCAAATCCAGAACGGGAAGACATGATCAGCATGGAGGAGCGGAAG
CAGCGCGTGGAAGAAGGAATGCGAAGGACAGCGAGTGCTTGTCGGGCTGA
CGCCCGCATCAGGGTGGAAGAAACGGTTCGGAACGAGAAGTATCAAGGGT
GGGTGAACATGTCGCGGCGAAAACGGTATATGGTCCTGCTCGCCCCCGAA
ATGCCCATAATTGCTGCAACCGCAGCTAAACCACAAATAGAACTACAAGT
AGGACCACCAACAGTATTCGTAACAGCCGCCACCTCGTCAGCATTATCCA
CGAGATTGCCTTCCCTCTCCACGGCAACTTTAACAGGAAAAGAGAGCTTT
CCCCGCCTGGCCCTGTACTCGAACCCGAGTGACCTACGAAGTCACAAGCC
ACCAAAGGAGACAATAGTCCTTACAGCTGACTGCATCGTCGAGTCCCGTC
GGTTGCCCATCGCCGCAACCCTTTCGAGCAGCGGTGGCATAAGGGGCAGG
GGTAGGAGCAGTAGTTGGCAGAAGACCTCATTCTCGGCCCCGTCAACCAG
TACATCGCCGAGCTCGTTTTCCGAGACGCTGGAGCCGGATACGGTCATTG
ACTTGCTGCTGACCAGCAGTCGGACAGGGCTCCTCAAGACTTTAACCTTG
CAGTGTTTTACGGTGGAGGAGGAGAATAGATGGATTTCGGAGTTGCAGCA
GGCGATTGGCGCGTTGACGGGCGAAGAGGAGTACGAGAGCAGCCCAGGGT
TCTTGGGTGGTGTGGGAAGCTTTTCTCGTGAGCTCTCGGAGCACATTTTT
CCGAGTGTGTGCTGTTCTCTCTCATAAAGGTTTTGAATAGGAATATAGAA
GAATGTGAGTGCAAATTGTCATACGTAAGTATGTACATTCGCACAAACCA
CTAAATCAAGCAGATTTTCACTTCTATTGCGTATGCATTTATGCATGTGT
GTTTATTTTGTAGATGTATCCGAATAAAAACAGACCAGTCAGTTTTAAGC
ATCTCTTGAAATTCAAAGAAACTTAATTTTGCTTGCTTCGAATCACATGC
TTGCAACC back to topCoding sequence (CDS) from alignment at scaffold_1:909982..912689- >mRNA_1541 ID=mRNA_1541|Name=jgi.p|Nanoce1779_2|572642|organism=Nannochloropsis oceanica|type=CDS|length=4464bp|location=Sequence derived from alignment at scaffold_1:909982..912689- (Nannochloropsis oceanica) GTTCCTCGTGTTGGAGGGCAGCACCCTGAGCTTCTACCAAAATGAGGAAA ACACCGGCCCCATGGTTGGAATGGAAAATGTGGAGAAATTGAGGCTGGCT GATGACTCAGTGCTGGACTTTGTGCACGTGCCTGAGGACAAGACCAAGCT GATATTTCTTGTCAAGGGAGATGGAGGAGGTGGAACGGAGACGAACGATA AGTCCTTCACTTTCTCCAGCAACGGCGGTCGGGACAACGACGAATGGATA GAGCACATCCAGGAGGCAATTGAATCGATCCAGCGACAGAGCGAGCAGGA ATTAGTTGGGTTTCCGCCGGGTCAGTCGTCCATCCTGTCTACTCCTAGCA CGCGCAATGGCGACACGGCCACCTGCGTGGAGCGTGGGACCCCACTAGGC TCGGACGGTCGGATGCAAATGTCTGCCCCTTCTTTGCCGTCCAGCGAACC AGCATTTAGCCGCCCTGTAGTACCAATGTCACCATCATCACGACAACAGC CACCATCATCACTGCAAAAGCAAAGGATACCGATTGTAGAATCGTCCCTC GTCCCACTGGCCCCATTCGAGCTTTCCATCCAAAATCCTCACACCTTGCA CCTTCGTTCCTCCGTCTCCTGTACCCAGCCCGTCAGCATCATTACTGCCA CTCCACCACAAGCACCGCTGGCCCAGTATCCTCACCAGCCGCAACAGCAG CTGCAGCAGCATGACGCGGTTTGGACTCCTGTTCCTGTCTCGTCGTCGCA GCAACCCACTCCTTGGGGTGAGGCGGGTGACGGGGAAGGAAAACGAGCCG AGAGTGCGAGTCATTTGTCGGTCCTCCCACCCTCACCGGGAATGCTTCGT AAGGATGAGAGCAACTCAGGTTTTGGCGGCGGTGGTGAAGGGGGAATGGG GAGAGGGATGGACGAGACGACTGCAGGGATGCTAGGGATGACTGTTCGCA CTTTGGCTGCTGTCACGGGCGAGGGGGAGGAGGAAGATGAGGAGACTGAG GAGGAGGTAAAGCCTACTGAGGCAGCTTTGTCAAGAGGAGGTCTGACGAT GAGCGCCTTGGAAGAGCTAGCAGGGGGAAAGCGACGGCCAAATCCAGAAC GGGAAGACATGATCAGCATGGAGGAGCGGAAGCAGCGCGTGGAAGAAGGA ATGCGAAGGACAGCGAGTGCTTGTCGGGCTGACGCCCGCATCAGGGTGGA AGAAACGGTTCGGAACGAGAAGTATCAAGGGTGGGTGAACATGTCGCGGC GAAAACGGTATATGGTCCTGCTCGCCCCCGAAATGCCCATAATTGCTGCA ACCGCAGCTAAACCACAAATAGAACTACAAGTAGGACCACCAACAGTATT CGTAACAGCCGCCACCTCGTCAGCATTATCCACGAGATTGCCTTCCCTCT CCACGGCAACTTTAACAGGAAAAGAGAGCTTTCCCCGCCTGGCCCTGTAC TCGAACCCGAGTGACCTACGAAGTCACAAGCCACCAAAGGAGACAATAGT CCTTACAGCTGACTGCATCGTCGAGTCCCGTCGGTTGCCCATCGCCGCAA CCCTTTCGAGCAGCGGTGGCATAAGGGGCAGGGGTAGGAGCAGTAGTTGG CAGAAGACCTCATTCTCGGCCCCGTCAACCAGTACATCGCCGAGCTCGTT TTCCGAGACGCTGGAGCCGGATACGGTCATTGACTTGCTGCTGACCAGCA GTCGGACAGGGCTCCTCAAGACTTTAACCTTGCAGTGTTTTACGGTGGAG GAGGAGAATAGATGGATTTCGGAGTTGCAGCAGGCGATTGGCGCGTTGAC GGGCGAAGAGGAGTACGAGAGCAGCCCAGGGTTCTTGGGTGGTGTGGGAA GCTTTTCTCGTGAGCTCTCGGAGCACATTTTTCCGAGTGTGTGCTGTTCT CTCTCATAAATGCCCTCCATCTTTGGCCTGGGTGGGAGCGGCAGTGGGAG CAGCCGGAGTGGCAACGGAAGAGGGGGAAGGAGCAACGACACCGGGCCTG CTCCCGCGCCTTGTTCCACAAGCCGGGTCAGTAATGAGGAATGTGCTGCT GTCAAGTCCGCCCACCGATCTGTCAAGGTCATGGAGCCAGTTGTGGACGG CTGCAGCACAAATTTGGTTGACTTTCGACGCTCCCCCCCCCACCCCCTCG TCACACGGACCGTGCCTGACAACCACATCCTCTTCCAGGGCTGGGTCACG GACGAAAGGTGTATGGATGTTAAACCCAAAAGGTTCCTCGTGTTGGAGGG CAGCACCCTGAGCTTCTACCAAAATGAGGAAAACACCGGCCCCATGGTTG GAATGGAAAATGTGGAGAAATTGAGGCTGGCTGATGACTCAGTGCTGGAC TTTGTGCACGTGCCTGAGGACAAGACCAAGCTGATATTTCTTGTCAAGGG AGATGGAGGAGGTGGAACGGAGACGAACGATAAGTCCTTCACTTTCTCCA GCAACGGCGGTCGGGACAACGACGAATGGATAGAGCACATCCAGGAGGCA ATTGAATCGATCCAGCGACAGAGCGAGCAGGAATTAGTTGGGTTTCCGCC GGGTCAGTCGTCCATCCTGTCTACTCCTAGCACGCGCAATGGCGACACGG CCACCTGCGTGGAGCGTGGGACCCCACTAGGCTCGGACGGTCGGATGCAA ATGTCTGCCCCTTCTTTGCCGTCCAGCGAACCAGCATTTAGCCGCCCTGT AGTACCAATGTCACCATCATCACGACAACAGCCACCATCATCACTGCAAA AGCAAAGGATACCGATTGTAGAATCGTCCCTCGTCCCACTGGCCCCATTC GAGCTTTCCATCCAAAATCCTCACACCTTGCACCTTCGTTCCTCCGTCTC CTGTACCCAGCCCGTCAGCATCATTACTGCCACTCCACCACAAGCACCGC TGGCCCAGTATCCTCACCAGCCGCAACAGCAGCTGCAGCAGCATGACGCG GTTTGGACTCCTGTTCCTGTCTCGTCGTCGCAGCAACCCACTCCTTGGGG TGAGGCGGGTGACGGGGAAGGAAAACGAGCCGAGAGTGCGAGTCATTTGT CGGTCCTCCCACCCTCACCGGGAATGCTTCGTAAGGATGAGAGCAACTCA GGTTTTGGCGGCGGTGGTGAAGGGGGAATGGGGAGAGGGATGGACGAGAC GACTGCAGGGATGCTAGGGATGACTGTTCGCACTTTGGCTGCTGTCACGG GCGAGGGGGAGGAGGAAGATGAGGAGACTGAGGAGGAGGTAAAGCCTACT GAGGCAGCTTTGTCAAGAGGAGGTCTGACGATGAGCGCCTTGGAAGAGCT AGCAGGGGGAAAGCGACGGCCAAATCCAGAACGGGAAGACATGATCAGCA TGGAGGAGCGGAAGCAGCGCGTGGAAGAAGGAATGCGAAGGACAGCGAGT GCTTGTCGGGCTGACGCCCGCATCAGGGTGGAAGAAACGGTTCGGAACGA GAAGTATCAAGGGTGGGTGAACATGTCGCGGCGAAAACGGTATATGGTCC TGCTCGCCCCCGAAATGCCCATAATTGCTGCAACCGCAGCTAAACCACAA ATAGAACTACAAGTAGGACCACCAACAGTATTCGTAACAGCCGCCACCTC GTCAGCATTATCCACGAGATTGCCTTCCCTCTCCACGGCAACTTTAACAG GAAAAGAGAGCTTTCCCCGCCTGGCCCTGTACTCGAACCCGAGTGACCTA CGAAGTCACAAGCCACCAAAGGAGACAATAGTCCTTACAGCTGACTGCAT CGTCGAGTCCCGTCGGTTGCCCATCGCCGCAACCCTTTCGAGCAGCGGTG GCATAAGGGGCAGGGGTAGGAGCAGTAGTTGGCAGAAGACCTCATTCTCG GCCCCGTCAACCAGTACATCGCCGAGCTCGTTTTCCGAGACGCTGGAGCC GGATACGGTCATTGACTTGCTGCTGACCAGCAGTCGGACAGGGCTCCTCA AGACTTTAACCTTGCAGTGTTTTACGGTGGAGGAGGAGAATAGATGGATT TCGGAGTTGCAGCAGGCGATTGGCGCGTTGACGGGCGAAGAGGAGTACGA GAGCAGCCCAGGGTTCTTGGGTGGTGTGGGAAGCTTTTCTCGTGAGCTCT CGGAGCACATTTTTCCGAGTGTGTGCTGTTCTCTCTCATAAATGCCCTCC ATCTTTGGCCTGGGTGGGAGCGGCAGTGGGAGCAGCCGGAGTGGCAACGG AAGAGGGGGAAGGAGCAACGACACCGGGCCTGCTCCCGCGCCTTGTTCCA CAAGCCGGGTCAGTAATGAGGAATGTGCTGCTGTCAAGTCCGCCCACCGA TCTGTCAAGGTCATGGAGCCAGTTGTGGACGGCTGCAGCACAAATTTGGT TGACTTTCGACGCTCCCCCCCCCACCCCCTCGTCACACGGACCGTGCCTG ACAACCACATCCTCTTCCAGGGCTGGGTCACGGACGAAAGGTGTATGGAT GTTAAACCCAAAAG back to top
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