jgi.p|Nanoce1779_2|572640, mRNA_1540 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|572640
Unique Name	mRNA_1540
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2119
Alignment location	scaffold_1:907700..909981 +

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Properties


Property Name	Value
TranscriptId	572726
Track	FilteredModels2
ProteinId	572640

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_1	supercontig	scaffold_1:907700..909981 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|572640	gene_1540	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|572640	mRNA_1540-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1540	CDS_1540	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_1:907700..909981+
coding sequence from alignment at scaffold_1:907700..909981+

mRNA sequence

>mRNA_1540 ID=mRNA_1540|Name=jgi.p|Nanoce1779_2|572640|organism=Nannochloropsis oceanica|type=mRNA|length=2119bp
ACAGGCAACTGCATTGTCTGGTCGTCCAATCCGGAGGGCGCCCTGGATTA
TAGTGCAACCGGTGGTGGTGCAGGCCAACCTCCTGAACTCCTGCGACCTC
CCGTCTCAGATCTTTTTATCGTCATCCCATCCGTGCATCTCCCACCCCGC
ATTGCACGGCACACCTGCCTGTAAGGCGTGCGCTACCTCAAGAAATCGTA
CCGAGGATGGGGTTGATCAGGCGAAGGCTTGTTGTCTTTTTGCCATGGCA
AGCGCCACCGCCCTGCACCGGGCAAAGAAGCTCATCAACGCGCCCGAGAG
TTTGGTGGAGGAAGCCGTTCAAGGTATGCTGCTCGCTCACCCTAAGACGC
TCGCACGCCTCGACGGTCTGCACGTACTCTTGCGGGTCGATTACGCTAAC
GTGAAAGCTTACCAAGTCGCATTAATTTCAGGCGGAGGCAGCGGACACGA
GCCAGCCCACGGGGGGTTCGTCGCGGACGGCATGCTGAGTGCGGCTGTGC
TTGGGGATGTGTTTGCTTCGCCGAGCGTAGGCAGCATTTTGGCAGCCATT
CGGGCTGTAACTGGACCTCGAGGCACCTTGCTTATTGTCAAGCGTTACAC
GGGCGACCTGCTGAATTTTGGCATGGCACGCGAACAAGCCTTGAGCGAGG
GGTTGCTAGTGGAGATGGTGGTGGTGGCGGACGATTGCGCTTTGCCGCAA
GCAAAGGGCATCACCGGCCGACGGGGGGTAGCGGGGACGGTCTTGGTCCA
TAAGATCGCGGGAGCTGCGGCCTCGGCGGGATTGGATTTGATGCATGTCA
AGGCAGAGGCCGAGCAGGCCATTTCCGACATGGGCTCATTAGGCCTGGCA
CTATCTGTGTGTACGGTGCCGGGCTCAACGCCTTCGGCGCGATTGGATGG
AGACACGGTGGAGCTGGGAATGGGTATTCACGGCGAGGAGGGGATCGAGC
GCATGCCCCTGCAACCTGTCGACGTTTTGATAGAGCGGATGATACAGACT
ATCATCAGCAAGGAGGGTGAGGGAGGGCACGGGTACCTTCCGCTGGCTCC
AAATCAAGACGTGGCACTGCTGGTCAACAATCTGGGAGCTACTCCACTCA
TTGAGTTAAATGTTGTGGTCAGACGGGCAGTGCAGGTGCTGGAGAGTGCA
CCGGTCTTTGCCCGTGTCCACCGTGTGTTTGTGGGGCCTTATATGACTTC
CTTGGAGATGGCTGGCGTGTCGCTGACCATTTTGAAAGCAATGCCGGAGT
GCTTAGCTCGATTGGACGCGCCCACCAAAGCTCCAGGTTGGCTCTCGGCG
GAGGTACGCGTGCCTGGAACGACAGGAGCCTCGATACCTTTGTCTCCTGC
CCCCAAAAGAAGCAATGCTGATACCGACGATTCCTCCGCCTCTACATCGC
CTTCTTCTTCACTTCTTCACGCCATCAAGATGTACCAAAACAACACTTTA
GCCGTAGGCGCAGCTTTGATTAAAGAAGAGGGTTATTTGAATGAGTTGGA
CAGCTATGGGGGCGACGGAGATTGCGGCGTAACGCTCAAGCGTGGAGCGA
AGGCCGCGATGGATCTTCCCGCGGATGTGGAACCGCGCAATGCCTCCGAT
TATGTCACCTCTGTAGCTAATGCTGTAAGCGACTCTATGGGAGGGACGTC
GGGAGCACTCTTCGAAATCTTTTTTCGGGCGCTAGCCCGTTCATTGTCCG
AGCAACAGGCGATGATCCCTACGCCGGAGCAGTGGGCAATCGGTGTGAAG
CACGCCGTTGAGCGTATGTCTTTCTATAGTGGCGCAAAGCCGGGCTACCG
CACGATGTTGGACGCTTGGATCCCAGCAAGCGAGGCTTTGCTGGCCGGTA
AAGGGTTGGAAGGAGCGGCAGCGGCCGCGAGAGCTGGTGCGGACGCGACC
AAAACGATGGAGGCTATGGCGGGGAGGGCAAATTACGTGCCGATATCTGT
GACCCATGGGCATGCAGACCCTGGTGCCGCGGCCGTGGCTCTCGCTTTTG
AGGTTATTCGGAGAAATCATTGCGGATGAACAATGGCTAAGCTTTAATGC
GAGAGAAAGATTGAGATAATTTATGTTTTTTGTCGACCGATAAGGAAAGA
GTTTAATGAACCAAAGAAG

protein sequence of jgi.p|Nanoce1779_2|572640

>mRNA_1540-protein ID=mRNA_1540-protein|Name=jgi.p|Nanoce1779_2|572640|organism=Nannochloropsis oceanica|type=polypeptide|length=595bp
MASATALHRAKKLINAPESLVEEAVQGMLLAHPKTLARLDGLHVLLRVDY
ANVKAYQVALISGGGSGHEPAHGGFVADGMLSAAVLGDVFASPSVGSILA
AIRAVTGPRGTLLIVKRYTGDLLNFGMAREQALSEGLLVEMVVVADDCAL
PQAKGITGRRGVAGTVLVHKIAGAAASAGLDLMHVKAEAEQAISDMGSLG
LALSVCTVPGSTPSARLDGDTVELGMGIHGEEGIERMPLQPVDVLIERMI
QTIISKEGEGGHGYLPLAPNQDVALLVNNLGATPLIELNVVVRRAVQVLE
SAPVFARVHRVFVGPYMTSLEMAGVSLTILKAMPECLARLDAPTKAPGWL
SAEVRVPGTTGASIPLSPAPKRSNADTDDSSASTSPSSSLLHAIKMYQNN
TLAVGAALIKEEGYLNELDSYGGDGDCGVTLKRGAKAAMDLPADVEPRNA
SDYVTSVANAVSDSMGGTSGALFEIFFRALARSLSEQQAMIPTPEQWAIG
VKHAVERMSFYSGAKPGYRTMLDAWIPASEALLAGKGLEGAAAAARAGAD
ATKTMEAMAGRANYVPISVTHGHADPGAAAVALAFEVIRRNHCG*

mRNA from alignment at scaffold_1:907700..909981+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1540 ID=mRNA_1540|Name=jgi.p|Nanoce1779_2|572640|organism=Nannochloropsis oceanica|type=mRNA|length=2282bp|location=Sequence derived from alignment at scaffold_1:907700..909981+ (Nannochloropsis oceanica)
ACAGGCAACTGCATTGTCTGGTCGTCCAATCCGGAGGGCGCCCTGGATTA
TAGTGCAACCGGTGGTGGTGCAGGCCAACCTCCTGAACTCCTGCGACCTC
CCGTCTCAGATCTTTTTATCGTCATCCCATCCGTGCATCTCCCACCCCGC
ATTGCACGGCACACCTGCCTGTAAGGCGTGCGCTACCTCAAGAAATCGTA
CCGAGGATGGGGTTGATCAGGCGAAGGCTTGTTGTCTTTTTGGTGGGTGC
CGTGGGGAATTGCTTTTAATGGCGCATGCATGCCAAAGCAGGTCAACATG
CCGAACACCCCCCCTCCCTTGGCGGGGTGCTTAGGTTTTGTGCATTTGTA
AAACATTACGTGACAATCGAATGACCTCCCATATCTTTATTTTCCCCCAC
ATCAGCCATGGCAAGCGCCACCGCCCTGCACCGGGCAAAGAAGCTCATCA
ACGCGCCCGAGAGTTTGGTGGAGGAAGCCGTTCAAGGTATGCTGCTCGCT
CACCCTAAGACGCTCGCACGCCTCGACGGTCTGCACGTACTCTTGCGGGT
CGATTACGCTAACGTGAAAGCTTACCAAGTCGCATTAATTTCAGGCGGAG
GCAGCGGACACGAGCCAGCCCACGGGGGGTTCGTCGCGGACGGCATGCTG
AGTGCGGCTGTGCTTGGGGATGTGTTTGCTTCGCCGAGCGTAGGCAGCAT
TTTGGCAGCCATTCGGGCTGTAACTGGACCTCGAGGCACCTTGCTTATTG
TCAAGCGTTACACGGGCGACCTGCTGAATTTTGGCATGGCACGCGAACAA
GCCTTGAGCGAGGGGTTGCTAGTGGAGATGGTGGTGGTGGCGGACGATTG
CGCTTTGCCGCAAGCAAAGGGCATCACCGGCCGACGGGGGGTAGCGGGGA
CGGTCTTGGTCCATAAGATCGCGGGAGCTGCGGCCTCGGCGGGATTGGAT
TTGATGCATGTCAAGGCAGAGGCCGAGCAGGCCATTTCCGACATGGGCTC
ATTAGGCCTGGCACTATCTGTGTGTACGGTGCCGGGCTCAACGCCTTCGG
CGCGATTGGATGGAGACACGGTGGAGCTGGGAATGGGTATTCACGGCGAG
GAGGGGATCGAGCGCATGCCCCTGCAACCTGTCGACGTTTTGATAGAGCG
GATGATACAGACTATCATCAGCAAGGAGGGTGAGGGAGGGCACGGGTACC
TTCCGCTGGCTCCAAATCAAGACGTGGCACTGCTGGTCAACAATCTGGGA
GCTACTCCACTCATTGAGTTAAATGTTGTGGTCAGACGGGCAGTGCAGGT
GCTGGAGAGTGCACCGGTCTTTGCCCGTGTCCACCGTGTGTTTGTGGGGC
CTTATATGACTTCCTTGGAGATGGCTGGCGTGTCGCTGACCATTTTGAAA
GCAATGCCGGAGTGCTTAGCTCGATTGGACGCGCCCACCAAAGCTCCAGG
TTGGCTCTCGGCGGAGGTACGCGTGCCTGGAACGACAGGAGCCTCGATAC
CTTTGTCTCCTGCCCCCAAAAGAAGCAATGCTGATACCGACGATTCCTCC
GCCTCTACATCGCCTTCTTCTTCACTTCTTCACGCCATCAAGATGTACCA
AAACAACACTTTAGCCGTAGGCGCAGCTTTGATTAAAGAAGAGGGTTATT
TGAATGAGTTGGACAGCTATGGGGGCGACGGAGATTGCGGCGTAACGCTC
AAGCGTGGAGCGAAGGCCGCGATGGATCTTCCCGCGGATGTGGAACCGCG
CAATGCCTCCGATTATGTCACCTCTGTAGCTAATGCTGTAAGCGACTCTA
TGGGAGGGACGTCGGGAGCACTCTTCGAAATCTTTTTTCGGGCGCTAGCC
CGTTCATTGTCCGAGCAACAGGCGATGATCCCTACGCCGGAGCAGTGGGC
AATCGGTGTGAAGCACGCCGTTGAGCGTATGTCTTTCTATAGTGGCGCAA
AGCCGGGCTACCGCACGATGTTGGACGCTTGGATCCCAGCAAGCGAGGCT
TTGCTGGCCGGTAAAGGGTTGGAAGGAGCGGCAGCGGCCGCGAGAGCTGG
TGCGGACGCGACCAAAACGATGGAGGCTATGGCGGGGAGGGCAAATTACG
TGCCGATATCTGTGACCCATGGGCATGCAGACCCTGGTGCCGCGGCCGTG
GCTCTCGCTTTTGAGGTTATTCGGAGAAATCATTGCGGATGAACAATGGC
TAAGCTTTAATGCGAGAGAAAGATTGAGATAATTTATGTTTTTTGTCGAC
CGATAAGGAAAGAGTTTAATGAACCAAAGAAG

Coding sequence (CDS) from alignment at scaffold_1:907700..909981+

>mRNA_1540 ID=mRNA_1540|Name=jgi.p|Nanoce1779_2|572640|organism=Nannochloropsis oceanica|type=CDS|length=1785bp|location=Sequence derived from alignment at scaffold_1:907700..909981+ (Nannochloropsis oceanica)
ATGGCAAGCGCCACCGCCCTGCACCGGGCAAAGAAGCTCATCAACGCGCC
CGAGAGTTTGGTGGAGGAAGCCGTTCAAGGTATGCTGCTCGCTCACCCTA
AGACGCTCGCACGCCTCGACGGTCTGCACGTACTCTTGCGGGTCGATTAC
GCTAACGTGAAAGCTTACCAAGTCGCATTAATTTCAGGCGGAGGCAGCGG
ACACGAGCCAGCCCACGGGGGGTTCGTCGCGGACGGCATGCTGAGTGCGG
CTGTGCTTGGGGATGTGTTTGCTTCGCCGAGCGTAGGCAGCATTTTGGCA
GCCATTCGGGCTGTAACTGGACCTCGAGGCACCTTGCTTATTGTCAAGCG
TTACACGGGCGACCTGCTGAATTTTGGCATGGCACGCGAACAAGCCTTGA
GCGAGGGGTTGCTAGTGGAGATGGTGGTGGTGGCGGACGATTGCGCTTTG
CCGCAAGCAAAGGGCATCACCGGCCGACGGGGGGTAGCGGGGACGGTCTT
GGTCCATAAGATCGCGGGAGCTGCGGCCTCGGCGGGATTGGATTTGATGC
ATGTCAAGGCAGAGGCCGAGCAGGCCATTTCCGACATGGGCTCATTAGGC
CTGGCACTATCTGTGTGTACGGTGCCGGGCTCAACGCCTTCGGCGCGATT
GGATGGAGACACGGTGGAGCTGGGAATGGGTATTCACGGCGAGGAGGGGA
TCGAGCGCATGCCCCTGCAACCTGTCGACGTTTTGATAGAGCGGATGATA
CAGACTATCATCAGCAAGGAGGGTGAGGGAGGGCACGGGTACCTTCCGCT
GGCTCCAAATCAAGACGTGGCACTGCTGGTCAACAATCTGGGAGCTACTC
CACTCATTGAGTTAAATGTTGTGGTCAGACGGGCAGTGCAGGTGCTGGAG
AGTGCACCGGTCTTTGCCCGTGTCCACCGTGTGTTTGTGGGGCCTTATAT
GACTTCCTTGGAGATGGCTGGCGTGTCGCTGACCATTTTGAAAGCAATGC
CGGAGTGCTTAGCTCGATTGGACGCGCCCACCAAAGCTCCAGGTTGGCTC
TCGGCGGAGGTACGCGTGCCTGGAACGACAGGAGCCTCGATACCTTTGTC
TCCTGCCCCCAAAAGAAGCAATGCTGATACCGACGATTCCTCCGCCTCTA
CATCGCCTTCTTCTTCACTTCTTCACGCCATCAAGATGTACCAAAACAAC
ACTTTAGCCGTAGGCGCAGCTTTGATTAAAGAAGAGGGTTATTTGAATGA
GTTGGACAGCTATGGGGGCGACGGAGATTGCGGCGTAACGCTCAAGCGTG
GAGCGAAGGCCGCGATGGATCTTCCCGCGGATGTGGAACCGCGCAATGCC
TCCGATTATGTCACCTCTGTAGCTAATGCTGTAAGCGACTCTATGGGAGG
GACGTCGGGAGCACTCTTCGAAATCTTTTTTCGGGCGCTAGCCCGTTCAT
TGTCCGAGCAACAGGCGATGATCCCTACGCCGGAGCAGTGGGCAATCGGT
GTGAAGCACGCCGTTGAGCGTATGTCTTTCTATAGTGGCGCAAAGCCGGG
CTACCGCACGATGTTGGACGCTTGGATCCCAGCAAGCGAGGCTTTGCTGG
CCGGTAAAGGGTTGGAAGGAGCGGCAGCGGCCGCGAGAGCTGGTGCGGAC
GCGACCAAAACGATGGAGGCTATGGCGGGGAGGGCAAATTACGTGCCGAT
ATCTGTGACCCATGGGCATGCAGACCCTGGTGCCGCGGCCGTGGCTCTCG
CTTTTGAGGTTATTCGGAGAAATCATTGCGGATGA

Synonyms

Publications