jgi.p|Nanoce1779_2|576386, mRNA_154 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|576386
Unique NamemRNA_154
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length673
Alignment locationscaffold_3:397695..398367 -

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Properties
Property NameValue
TranscriptId576472
TrackFilteredModels2
ProteinId576386
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:397695..398367 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576386gene_154Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576386mRNA_154-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_154CDS_154Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_154 ID=mRNA_154|Name=jgi.p|Nanoce1779_2|576386|organism=Nannochloropsis oceanica|type=mRNA|length=673bp
AACACTAGATCGCGTGACATAGAGCGACAAGAAATGTGCGGTCACGAGGC
CATAGAATTAAAGCACATAATTACGGTCCTCGACGGGATACCTAAGGCAT
GAAGCCTTACAATATGTTGTGAGAGATCAATATGTGCGGTATTTGGTGAG
GAAGACAACACGTCCAGACTACAGACATTCGAGTTGGGAGGCAAGAAGAT
GGGCCAAGTGGGAACTGTCTTCTATCTATTCAGATGATTTGTATCTCTTC
ACTGGGACTGCTTACACCCCCTCCTTCCCTAACAGTTTCTATATTTGACA
AGGATTTGACGAAAAGGGGGTTGAGGAGGGAGGGGAGAAGGGATGTTTGG
TGGAAGGGTGTAGGAGGGGTTGCCTTGCGGAGGGGGGAAAGTGGAGGGGA
GGAAGAGGAAGGCACGGAGAAGGAGGAGGATACGAGTTTTCGGTTTATAG
AAACGAGACGGATATGGACCATTTATAAAGTTAGAGTGTGGTAGAAGGGT
GGGAGGGAGGGGTGGAGTAAGGGAGATTAAGATGCATGTAGGATTATGAC
ATGAGCTTTCACTCAAGATTTTTTTCAGGAATCAGGGTACTTTTCATTTA
CAATTGATTCGCTGGCTAGTCCTGAAAGTAAGTAAGCAAAAACATCAGGT
TGAAGAGAAATGGTAAGTAAAGC
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protein sequence of jgi.p|Nanoce1779_2|576386

>mRNA_154-protein ID=mRNA_154-protein|Name=jgi.p|Nanoce1779_2|576386|organism=Nannochloropsis oceanica|type=polypeptide|length=87bp
MICISSLGLLTPPPSLTVSIFDKDLTKRGLRREGRRDVWWKGVGGVALRR
GESGGEEEEGTEKEEDTSFRFIETRRIWTIYKVRVW*
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mRNA from alignment at scaffold_3:397695..398367-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_154 ID=mRNA_154|Name=jgi.p|Nanoce1779_2|576386|organism=Nannochloropsis oceanica|type=mRNA|length=673bp|location=Sequence derived from alignment at scaffold_3:397695..398367- (Nannochloropsis oceanica)
AACACTAGATCGCGTGACATAGAGCGACAAGAAATGTGCGGTCACGAGGC
CATAGAATTAAAGCACATAATTACGGTCCTCGACGGGATACCTAAGGCAT
GAAGCCTTACAATATGTTGTGAGAGATCAATATGTGCGGTATTTGGTGAG
GAAGACAACACGTCCAGACTACAGACATTCGAGTTGGGAGGCAAGAAGAT
GGGCCAAGTGGGAACTGTCTTCTATCTATTCAGATGATTTGTATCTCTTC
ACTGGGACTGCTTACACCCCCTCCTTCCCTAACAGTTTCTATATTTGACA
AGGATTTGACGAAAAGGGGGTTGAGGAGGGAGGGGAGAAGGGATGTTTGG
TGGAAGGGTGTAGGAGGGGTTGCCTTGCGGAGGGGGGAAAGTGGAGGGGA
GGAAGAGGAAGGCACGGAGAAGGAGGAGGATACGAGTTTTCGGTTTATAG
AAACGAGACGGATATGGACCATTTATAAAGTTAGAGTGTGGTAGAAGGGT
GGGAGGGAGGGGTGGAGTAAGGGAGATTAAGATGCATGTAGGATTATGAC
ATGAGCTTTCACTCAAGATTTTTTTCAGGAATCAGGGTACTTTTCATTTA
CAATTGATTCGCTGGCTAGTCCTGAAAGTAAGTAAGCAAAAACATCAGGT
TGAAGAGAAATGGTAAGTAAAGC
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Coding sequence (CDS) from alignment at scaffold_3:397695..398367-

>mRNA_154 ID=mRNA_154|Name=jgi.p|Nanoce1779_2|576386|organism=Nannochloropsis oceanica|type=CDS|length=261bp|location=Sequence derived from alignment at scaffold_3:397695..398367- (Nannochloropsis oceanica)
ATGATTTGTATCTCTTCACTGGGACTGCTTACACCCCCTCCTTCCCTAAC
AGTTTCTATATTTGACAAGGATTTGACGAAAAGGGGGTTGAGGAGGGAGG
GGAGAAGGGATGTTTGGTGGAAGGGTGTAGGAGGGGTTGCCTTGCGGAGG
GGGGAAAGTGGAGGGGAGGAAGAGGAAGGCACGGAGAAGGAGGAGGATAC
GAGTTTTCGGTTTATAGAAACGAGACGGATATGGACCATTTATAAAGTTA
GAGTGTGGTAG
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Synonyms
Publications