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Properties
| Property Name | Value |
|---|
| TranscriptId | 572723 |
| Track | FilteredModels2 |
| ProteinId | 572637 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_1 | supercontig | scaffold_1:905697..907306 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_1539 ID=mRNA_1539|Name=jgi.p|Nanoce1779_2|572637|organism=Nannochloropsis oceanica|type=mRNA|length=1610bp
ACAGAAGGATATGCATGCCACTATGAGCATCGGGACCGGGGCCTTGGGCC
TGATGTGGATGCTGTGCGTCTCTCAGGTAGTCGCTTTCAGACCAGTTGTC
ATGCTAAGAGCAACGGCAGCACGAGGAGGCATGATCACGACCGCCTCTTC
GTGTGTCGCCCTACCAGTAGCCATATCGCTGCCATGCAAACGGCTTTACT
CCACGATTGCGTAAGTACATGCAGGGATGATGGCAAAGGTCGTCGAAAAA
GGGGCATAGGAGCCCGGGCCTGGTCTCGCGCTCGGGAGAAATATTCCTTT
GTACGAACAAAATGATCTTTCTGCTACTTCTACCATCGATGCCAGCATGC
ATACTCTGCGAGCTTTCATGTTTATCTTCATATGTATGATGGTGCTTCTA
GATTTGGTGATGTCTTATTATATAGGTTTATCGAACCCCTCCTTTCTAAT
TCTATATCGCCTGCACCCGCCACCACTCTCCGATCAAATTGCTACTTGAA
GACATCTCTTCTCTTTCTCCTCTATGACTCTCCTCACCATCACTACTTCA
GCGAATCAACGGACGCGGCCTCCGATCAGGCGGCCGCAGAAGAACTGGAG
AAGGACGTGCTCAAGTCCGAGTGCGGGGTGGACTATGTGCCCTTGGCCAA
CATGCTGCTTACCGGAGACTTCAAGGCCGCCGACCAATTTACCCGCGATG
CTCTCATTCAGATTGCCGGGGAGGATGCGCAAAAGCGGGGATATGTGTAT
TTTACTGAGGTAAGAGGCTTGCCGGAGGCGGACATGGCGACGATCGAGAA
GCTCTGGCTCAAGTACAGCAAGGGCAAGTTTGGATTCACAGTCCAGCGCG
CGATCTGGAACCAAGTAACGGTGGGCAAGGATTTCGAGCGATTTTGCCGG
AAGATTGGGTGGAATATGATGGAGAACGGGATCGAGCGCAAGCTTAAGTG
GTTTGGTAACTCTGAGTTTATCTACGATTTGGACAAGGCTCCCCCCGGCC
ACCTACCTCTCACCTCGGCCCTACGCGGCACGTCTCTGTTGAAAAATTTG
CTGACTTACCCTCTGTGGGAGACGGATTGGAATAAAGAGGAGAAAAAAGA
GTAGAAATGACATGAGATAGATGGAGTGGGAAGTCACGAAGGAAAGTGTG
TGAATAGGGGGCGACGACAGGGAGGAGAAGGAGGGCGTGTGGCGGGTGTG
GCCGCGTGCTGGAGGAAGGATGCGTAAACGATTAGGAGAGTCCGGCAAGC
GGTGCGTGCGTTCGAAAAGCGATGGAGGGATAAGTGGGACGAAGAGAAGC
GGAGAGGGAACGACGGACGAAGAAGGGGTGTCGATGCACACATGCAGGAA
AACGTCATTTTTGTTGCTGGACACAGCAAATCCACATTCCCGTTACAAAA
TGCTGACGAGAACAAATAATTTTGTGAAGGAGGCCAGTAACAGACGCGAC
ATTACCCCCCTTGAGGAGCAAAATAAATGGGGAGGGAAAGGTAGAGACCG
AGTGAGGGAGAGAGAGAGAGAGACCCACGAGACAACACGACTAACAATGA
CAAGAAAAGGGGAAAAGGAGGGCATTTTGGTAAAGAATACATCTTTGGAA
CTTCACGTGA back to topprotein sequence of jgi.p|Nanoce1779_2|572637 >mRNA_1539-protein ID=mRNA_1539-protein|Name=jgi.p|Nanoce1779_2|572637|organism=Nannochloropsis oceanica|type=polypeptide|length=241bp
MYDGASRFGDVLLYRFIEPLLSNSISPAPATTLRSNCYLKTSLLFLLYDS
PHHHYFSESTDAASDQAAAEELEKDVLKSECGVDYVPLANMLLTGDFKAA
DQFTRDALIQIAGEDAQKRGYVYFTEVRGLPEADMATIEKLWLKYSKGKF
GFTVQRAIWNQVTVGKDFERFCRKIGWNMMENGIERKLKWFGNSEFIYDL
DKAPPGHLPLTSALRGTSLLKNLLTYPLWETDWNKEEKKE* back to topmRNA from alignment at scaffold_1:905697..907306- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_1539 ID=mRNA_1539|Name=jgi.p|Nanoce1779_2|572637|organism=Nannochloropsis oceanica|type=mRNA|length=1610bp|location=Sequence derived from alignment at scaffold_1:905697..907306- (Nannochloropsis oceanica)
ACAGAAGGATATGCATGCCACTATGAGCATCGGGACCGGGGCCTTGGGCC
TGATGTGGATGCTGTGCGTCTCTCAGGTAGTCGCTTTCAGACCAGTTGTC
ATGCTAAGAGCAACGGCAGCACGAGGAGGCATGATCACGACCGCCTCTTC
GTGTGTCGCCCTACCAGTAGCCATATCGCTGCCATGCAAACGGCTTTACT
CCACGATTGCGTAAGTACATGCAGGGATGATGGCAAAGGTCGTCGAAAAA
GGGGCATAGGAGCCCGGGCCTGGTCTCGCGCTCGGGAGAAATATTCCTTT
GTACGAACAAAATGATCTTTCTGCTACTTCTACCATCGATGCCAGCATGC
ATACTCTGCGAGCTTTCATGTTTATCTTCATATGTATGATGGTGCTTCTA
GATTTGGTGATGTCTTATTATATAGGTTTATCGAACCCCTCCTTTCTAAT
TCTATATCGCCTGCACCCGCCACCACTCTCCGATCAAATTGCTACTTGAA
GACATCTCTTCTCTTTCTCCTCTATGACTCTCCTCACCATCACTACTTCA
GCGAATCAACGGACGCGGCCTCCGATCAGGCGGCCGCAGAAGAACTGGAG
AAGGACGTGCTCAAGTCCGAGTGCGGGGTGGACTATGTGCCCTTGGCCAA
CATGCTGCTTACCGGAGACTTCAAGGCCGCCGACCAATTTACCCGCGATG
CTCTCATTCAGATTGCCGGGGAGGATGCGCAAAAGCGGGGATATGTGTAT
TTTACTGAGGTAAGAGGCTTGCCGGAGGCGGACATGGCGACGATCGAGAA
GCTCTGGCTCAAGTACAGCAAGGGCAAGTTTGGATTCACAGTCCAGCGCG
CGATCTGGAACCAAGTAACGGTGGGCAAGGATTTCGAGCGATTTTGCCGG
AAGATTGGGTGGAATATGATGGAGAACGGGATCGAGCGCAAGCTTAAGTG
GTTTGGTAACTCTGAGTTTATCTACGATTTGGACAAGGCTCCCCCCGGCC
ACCTACCTCTCACCTCGGCCCTACGCGGCACGTCTCTGTTGAAAAATTTG
CTGACTTACCCTCTGTGGGAGACGGATTGGAATAAAGAGGAGAAAAAAGA
GTAGAAATGACATGAGATAGATGGAGTGGGAAGTCACGAAGGAAAGTGTG
TGAATAGGGGGCGACGACAGGGAGGAGAAGGAGGGCGTGTGGCGGGTGTG
GCCGCGTGCTGGAGGAAGGATGCGTAAACGATTAGGAGAGTCCGGCAAGC
GGTGCGTGCGTTCGAAAAGCGATGGAGGGATAAGTGGGACGAAGAGAAGC
GGAGAGGGAACGACGGACGAAGAAGGGGTGTCGATGCACACATGCAGGAA
AACGTCATTTTTGTTGCTGGACACAGCAAATCCACATTCCCGTTACAAAA
TGCTGACGAGAACAAATAATTTTGTGAAGGAGGCCAGTAACAGACGCGAC
ATTACCCCCCTTGAGGAGCAAAATAAATGGGGAGGGAAAGGTAGAGACCG
AGTGAGGGAGAGAGAGAGAGAGACCCACGAGACAACACGACTAACAATGA
CAAGAAAAGGGGAAAAGGAGGGCATTTTGGTAAAGAATACATCTTTGGAA
CTTCACGTGA back to topCoding sequence (CDS) from alignment at scaffold_1:905697..907306- >mRNA_1539 ID=mRNA_1539|Name=jgi.p|Nanoce1779_2|572637|organism=Nannochloropsis oceanica|type=CDS|length=723bp|location=Sequence derived from alignment at scaffold_1:905697..907306- (Nannochloropsis oceanica)
ATGTATGATGGTGCTTCTAGATTTGGTGATGTCTTATTATATAGGTTTAT
CGAACCCCTCCTTTCTAATTCTATATCGCCTGCACCCGCCACCACTCTCC
GATCAAATTGCTACTTGAAGACATCTCTTCTCTTTCTCCTCTATGACTCT
CCTCACCATCACTACTTCAGCGAATCAACGGACGCGGCCTCCGATCAGGC
GGCCGCAGAAGAACTGGAGAAGGACGTGCTCAAGTCCGAGTGCGGGGTGG
ACTATGTGCCCTTGGCCAACATGCTGCTTACCGGAGACTTCAAGGCCGCC
GACCAATTTACCCGCGATGCTCTCATTCAGATTGCCGGGGAGGATGCGCA
AAAGCGGGGATATGTGTATTTTACTGAGGTAAGAGGCTTGCCGGAGGCGG
ACATGGCGACGATCGAGAAGCTCTGGCTCAAGTACAGCAAGGGCAAGTTT
GGATTCACAGTCCAGCGCGCGATCTGGAACCAAGTAACGGTGGGCAAGGA
TTTCGAGCGATTTTGCCGGAAGATTGGGTGGAATATGATGGAGAACGGGA
TCGAGCGCAAGCTTAAGTGGTTTGGTAACTCTGAGTTTATCTACGATTTG
GACAAGGCTCCCCCCGGCCACCTACCTCTCACCTCGGCCCTACGCGGCAC
GTCTCTGTTGAAAAATTTGCTGACTTACCCTCTGTGGGAGACGGATTGGA
ATAAAGAGGAGAAAAAAGAGTAG back to top
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