jgi.p|Nanoce1779_2|572628, mRNA_1537 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|572628
Unique Name	mRNA_1537
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1359
Alignment location	scaffold_1:891321..893325 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	572714
Track	FilteredModels2
ProteinId	572628

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_1	supercontig	scaffold_1:891321..893325 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|572628	gene_1537	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|572628	mRNA_1537-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1537	CDS_1537	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_1:891321..893325+
coding sequence from alignment at scaffold_1:891321..893325+

mRNA sequence

>mRNA_1537 ID=mRNA_1537|Name=jgi.p|Nanoce1779_2|572628|organism=Nannochloropsis oceanica|type=mRNA|length=1359bp
CAGAGATTCTCTCCGATCCAACATGAGGCTCTTCTCTCTCCTGACCCTGG
CAGTAGTGGCGACGGCGGTGCAGGCTGCGGTCGTGGTCCTGACCCCTGCC
AACTTCGATCAGATTGTCGACGGCACTCGTAATGTCCTCGTCGAATTCTA
CGCTCCGTGGTGCGGGCACTGCAAGACCCTAGCCCCCGAGTACGAAATTG
CCGGGGACACCTACAAGGCCGGTGACGGTGTGGTCATCGCCAAGGTCGAT
GCCGACGCCGAACGCAGCCTGGGCGAGCGTTTTGAGGTGAAGGGCTTCCC
CACCCTGAAGTGGTTCCCTAAGGGGAGTACCAGCCCCGAGGATTACGATG
GTGGCCGCACAGCCGACACGATTGTTTCGTGGGTGAATGGAAAGACTGGT
CTGACCCGCAAGATTAAGAAGACGCCCTCCGCAGTGGTGGAATTGACGGC
GGCGAACTTTGATTCCATTGCCATGGACCCGACGAAAGACGTTCTCGTCG
GTTTCACCGCACCGTGGTGTGGGCACTGCAAAACCCTCGTGCCCAAATAC
GAGGCCGTGGCAAAAATCTTCGCGGGAGAGAAGGACGTGATCGTTGCCAA
GGTAGACGCCACAGAACAACGCGATCTCGCCACCCGCTTCGACGTCTCGG
GCTACCCCACCTTGAAGTTCTTCCCCAAGGGCGAGGACAAAGAGGCGCAG
ACCTACGACAAGAGTCGTGAAATCAGCGGCTTCGTCGCTTTCTTGAACGA
AAAAGCTGGGACGGCATACACGGCGGAGGGAGGTCTCCTGCCGTCTGCGG
GGCGTATCCCCGCGCTCGACGTGTTGGTGGCCTCCGCGGGGAGCATCGGC
GCGGACACGCTCGCCAAGGGGAAGGCGGTTGTGGCTGAGCTTACGGGACA
GGCTGCTGTGCACGGTGAGATTTACGTCAAGGCCATTGACAAGATCCTGG
CGAAGGGCGCCGCGTACGTGGACACGGAGATGGAGCGTTTGCAGAAACTA
CTAGGGGGGGATAACATAAGCCCGGAGAAGAAGTTGTCGTTTTTGTTGAA
GTTCAATATTTTGCGGGCCTTCCATGGGGAGCCTGCCGAGGAGGTCTCTC
TGACGGAGGAGCTCTAAAAAAAGCTTGACGAGGACGAGTGAGCGAAGGTA
AGGAGTAGGGAGGGGGAGAGAGAAATAGGAGAGCGAGAATGAGCGGAAGG
TGAGCAAGAGGAAGTAGTTATACGACAGCATTAGAAGCAGCGAGAGGCAA
CCGAGAAATTGCTGGGGGGAGCGGCAAGGTTCTAAGAAATTGGTAAGAGA
ACCAAAATCAATAGGGCAACGCATTGTCCTGAAGAAGAAATAAGAACCAA
ACCCTGCGA

protein sequence of jgi.p|Nanoce1779_2|572628

>mRNA_1537-protein ID=mRNA_1537-protein|Name=jgi.p|Nanoce1779_2|572628|organism=Nannochloropsis oceanica|type=polypeptide|length=365bp
MRLFSLLTLAVVATAVQAAVVVLTPANFDQIVDGTRNVLVEFYAPWCGHC
KTLAPEYEIAGDTYKAGDGVVIAKVDADAERSLGERFEVKGFPTLKWFPK
GSTSPEDYDGGRTADTIVSWVNGKTGLTRKIKKTPSAVVELTAANFDSIA
MDPTKDVLVGFTAPWCGHCKTLVPKYEAVAKIFAGEKDVIVAKVDATEQR
DLATRFDVSGYPTLKFFPKGEDKEAQTYDKSREISGFVAFLNEKAGTAYT
AEGGLLPSAGRIPALDVLVASAGSIGADTLAKGKAVVAELTGQAAVHGEI
YVKAIDKILAKGAAYVDTEMERLQKLLGGDNISPEKKLSFLLKFNILRAF
HGEPAEEVSLTEEL*

mRNA from alignment at scaffold_1:891321..893325+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1537 ID=mRNA_1537|Name=jgi.p|Nanoce1779_2|572628|organism=Nannochloropsis oceanica|type=mRNA|length=2005bp|location=Sequence derived from alignment at scaffold_1:891321..893325+ (Nannochloropsis oceanica)
CAGAGATTCTCTCCGATCCAACATGAGGCTCTTCTCTCTCCTGACCCTGG
CAGTAGTGGCGACGGCGGTGCAGGTAAGAACGTCGTGACAATGGCATGCA
TGTCCTTTTCACAAGTGGAGTGACAGCGGTCGCTCATCTCTCGAACTCCT
TCCTTCATTCATTCCCCCACCAGGCTGCGGTCGTGGTCCTGACCCCTGCC
AACTTCGATCAGATTGTCGACGGCACTCGTAATGTCCTCGTCGAATTCTA
CGCTCCGTGGTGCGGGCACTGGTACGTTTTTTGTGAGACATCTTCCACGG
AATAGGCTAGGTAGGGAAAAGGGGGAGATTCTTCTACCACTGACCTGTCG
TTGTGTGAGCACTCCGTGGTGCTTGATTTCAGATTACGTGCAGTAACTTA
AATTGAAACGATTCTGTTATCTCCACTTCTGCCTTTCTCTTGAAACTTCC
ATCCCCTTCCACCGTCTTCAATTTGTCTCCCTCTCTCCCCCCAACCACAT
AGCAAGACCCTAGCCCCCGAGTACGAAATTGCCGGGGACACCTACAAGGC
CGGTGACGGTGTGGTCATCGCCAAGGTCGATGCCGACGCCGAACGCAGCC
TGGGCGAGCGTTTTGAGGTGAAGGGCTTCCCCACCCTGAAGTGGTTCCCT
AAGGGGAGTACCAGCCCCGAGGATTACGATGGTGGCCGCACAGCCGACAC
GATTGTTTCGTGGGTGAATGGAAAGACTGGTCTGACCCGCAAGATTAAGA
AGACGCCCTCCGCAGTGGTGGAATTGACGGCGGCGAACTTTGATTCCATT
GCCATGGACCCGACGAAAGACGTTCTCGTCGGTTTCACCGCACCGTGGTG
TGGGCACTGGCAAGTATTGAGGAAGAAAAGGACAAGGGATGTCAAGACAG
ATTTGCTTTGCACCGCCAGCCACCTTTTCATGCAAGCAAAATGATTCTTA
TCCTTTCGCTCACACCATTCATCAAATTCTTCCTCTCCCCCCATCCCCAC
CTCCCCCACCCCAGCAAAACCCTCGTGCCCAAATACGAGGCCGTGGCAAA
AATCTTCGCGGGAGAGAAGGACGTGATCGTTGCCAAGGTAGACGCCACAG
AACAACGCGATCTCGCCACCCGCTTCGACGTCTCGGGCTACCCCACCTTG
AAGTTCTTCCCCAAGGGCGAGGACAAAGAGGCGCAGACCTACGACAAGAG
TCGTGAAATCAGCGGCTTCGTCGCTTTCTTGAACGAAAAAGCTGGGACGG
CATACACGGCGGAGGGAGGTCTCCTGCCGTCTGCGGGGCGTATCCCCGCG
CTCGACGTGTTGGTGGCCTCCGCGGGGAGCATCGGCGCGGACACGCTCGC
CAAGGGGAAGGCGGTTGTGGCTGAGCTTACGGGACAGGCTGCTGTGCACG
GTGAGATTTACGTCAAGGCCATTGACAAGATCCTGGCGAAGGGCGCCGCG
TACGTGGACACGGAGATGGAGCGTTTGCAGAAACTACTAGGGGGGGATAA
CATAAGCCCGGAGAAGAAGTTGTCGTTTTTGTTGAAGTTCAATATTTTGC
GGGCCTTCCATGGGGAGCCTGCCGAGGAGGTCTCTCTGACGGAGGAGCTC
TAAAAAAAGCTTGACGAGGACGAGGTACGGGGGGAAGGTGGGTGACGGGG
CGTGGGGGGATGGGTCTCTTCTCTCTTTCTCTCTCTTTCTCTCTCTTTCG
CTATTTCGCTAAATCTCTCTCTCCCTCTCTCTCTCGCTCTCGCTCTCTCT
CTCTCTCTCTCTTGTTCTTCCTGCTTTTGTGAAGTGAGCGAAGGTAAGGA
GTAGGGAGGGGGAGAGAGAAATAGGAGAGCGAGAATGAGCGGAAGGTGAG
CAAGAGGAAGTAGTTATACGACAGCATTAGAAGCAGCGAGAGGCAACCGA
GAAATTGCTGGGGGGAGCGGCAAGGTTCTAAGAAATTGGTAAGAGAACCA
AAATCAATAGGGCAACGCATTGTCCTGAAGAAGAAATAAGAACCAAACCC
TGCGA

Coding sequence (CDS) from alignment at scaffold_1:891321..893325+

>mRNA_1537 ID=mRNA_1537|Name=jgi.p|Nanoce1779_2|572628|organism=Nannochloropsis oceanica|type=CDS|length=4380bp|location=Sequence derived from alignment at scaffold_1:891321..893325+ (Nannochloropsis oceanica)
ATGAGGCTCTTCTCTCTCCTGACCCTGGCAGTAGTGGCGACGGCGGTGCA
GGCTGCGGTCGTGGTCCTGACCCCTGCCAACTTCGATCAGATTGTCGACG
GCACTCGTAATGTCCTCGTCGAATTCTACGCTCCGTGGTGCGGGCACTGC
AAGACCCTAGCCCCCGAGTACGAAATTGCCGGGGACACCTACAAGGCCGG
TGACGGTGTGGTCATCGCCAAGGTCGATGCCGACGCCGAACGCAGCCTGG
GCGAGCGTTTTGAGGTGAAGGGCTTCCCCACCCTGAAGTGGTTCCCTAAG
GGGAGTACCAGCCCCGAGGATTACGATGGTGGCCGCACAGCCGACACGAT
TGTTTCGTGGGTGAATGGAAAGACTGGTCTGACCCGCAAGATTAAGAAGA
CGCCCTCCGCAGTGGTGGAATTGACGGCGGCGAACTTTGATTCCATTGCC
ATGGACCCGACGAAAGACGTTCTCGTCGGTTTCACCGCACCGTGGTGTGG
GCACTGCAAAACCCTCGTGCCCAAATACGAGGCCGTGGCAAAAATCTTCG
CGGGAGAGAAGGACGTGATCGTTGCCAAGGTAGACGCCACAGAACAACGC
GATCTCGCCACCCGCTTCGACGTCTCGGGCTACCCCACCTTGAAGTTCTT
CCCCAAGGGCGAGGACAAAGAGGCGCAGACCTACGACAAGAGTCGTGAAA
TCAGCGGCTTCGTCGCTTTCTTGAACGAAAAAGCTGGGACGGCATACACG
GCGGAGGGAGGTCTCCTGCCGTCTGCGGGGCGTATCCCCGCGCTCGACGT
GTTGGTGGCCTCCGCGGGGAGCATCGGCGCGGACACGCTCGCCAAGGGGA
AGGCGGTTGTGGCTGAGCTTACGGGACAGGCTGCTGTGCACGGTGAGATT
TACGTCAAGGCCATTGACAAGATCCTGGCGAAGGGCGCCGCGTACGTGGA
CACGGAGATGGAGCGTTTGCAGAAACTACTAGGGGGGGATAACATAAGCC
CGGAGAAGAAGTTGTCGTTTTTGTTGAAGTTCAATATTTTGCGGGCCTTC
CATGGGGAGCCTGCCGAGGAGGTCTCTCTGACGGAGGAGCTCTAAATGAG
GCTCTTCTCTCTCCTGACCCTGGCAGTAGTGGCGACGGCGGTGCAGGCTG
CGGTCGTGGTCCTGACCCCTGCCAACTTCGATCAGATTGTCGACGGCACT
CGTAATGTCCTCGTCGAATTCTACGCTCCGTGGTGCGGGCACTGCAAGAC
CCTAGCCCCCGAGTACGAAATTGCCGGGGACACCTACAAGGCCGGTGACG
GTGTGGTCATCGCCAAGGTCGATGCCGACGCCGAACGCAGCCTGGGCGAG
CGTTTTGAGGTGAAGGGCTTCCCCACCCTGAAGTGGTTCCCTAAGGGGAG
TACCAGCCCCGAGGATTACGATGGTGGCCGCACAGCCGACACGATTGTTT
CGTGGGTGAATGGAAAGACTGGTCTGACCCGCAAGATTAAGAAGACGCCC
TCCGCAGTGGTGGAATTGACGGCGGCGAACTTTGATTCCATTGCCATGGA
CCCGACGAAAGACGTTCTCGTCGGTTTCACCGCACCGTGGTGTGGGCACT
GCAAAACCCTCGTGCCCAAATACGAGGCCGTGGCAAAAATCTTCGCGGGA
GAGAAGGACGTGATCGTTGCCAAGGTAGACGCCACAGAACAACGCGATCT
CGCCACCCGCTTCGACGTCTCGGGCTACCCCACCTTGAAGTTCTTCCCCA
AGGGCGAGGACAAAGAGGCGCAGACCTACGACAAGAGTCGTGAAATCAGC
GGCTTCGTCGCTTTCTTGAACGAAAAAGCTGGGACGGCATACACGGCGGA
GGGAGGTCTCCTGCCGTCTGCGGGGCGTATCCCCGCGCTCGACGTGTTGG
TGGCCTCCGCGGGGAGCATCGGCGCGGACACGCTCGCCAAGGGGAAGGCG
GTTGTGGCTGAGCTTACGGGACAGGCTGCTGTGCACGGTGAGATTTACGT
CAAGGCCATTGACAAGATCCTGGCGAAGGGCGCCGCGTACGTGGACACGG
AGATGGAGCGTTTGCAGAAACTACTAGGGGGGGATAACATAAGCCCGGAG
AAGAAGTTGTCGTTTTTGTTGAAGTTCAATATTTTGCGGGCCTTCCATGG
GGAGCCTGCCGAGGAGGTCTCTCTGACGGAGGAGCTCTAAATGAGGCTCT
TCTCTCTCCTGACCCTGGCAGTAGTGGCGACGGCGGTGCAGGCTGCGGTC
GTGGTCCTGACCCCTGCCAACTTCGATCAGATTGTCGACGGCACTCGTAA
TGTCCTCGTCGAATTCTACGCTCCGTGGTGCGGGCACTGCAAGACCCTAG
CCCCCGAGTACGAAATTGCCGGGGACACCTACAAGGCCGGTGACGGTGTG
GTCATCGCCAAGGTCGATGCCGACGCCGAACGCAGCCTGGGCGAGCGTTT
TGAGGTGAAGGGCTTCCCCACCCTGAAGTGGTTCCCTAAGGGGAGTACCA
GCCCCGAGGATTACGATGGTGGCCGCACAGCCGACACGATTGTTTCGTGG
GTGAATGGAAAGACTGGTCTGACCCGCAAGATTAAGAAGACGCCCTCCGC
AGTGGTGGAATTGACGGCGGCGAACTTTGATTCCATTGCCATGGACCCGA
CGAAAGACGTTCTCGTCGGTTTCACCGCACCGTGGTGTGGGCACTGCAAA
ACCCTCGTGCCCAAATACGAGGCCGTGGCAAAAATCTTCGCGGGAGAGAA
GGACGTGATCGTTGCCAAGGTAGACGCCACAGAACAACGCGATCTCGCCA
CCCGCTTCGACGTCTCGGGCTACCCCACCTTGAAGTTCTTCCCCAAGGGC
GAGGACAAAGAGGCGCAGACCTACGACAAGAGTCGTGAAATCAGCGGCTT
CGTCGCTTTCTTGAACGAAAAAGCTGGGACGGCATACACGGCGGAGGGAG
GTCTCCTGCCGTCTGCGGGGCGTATCCCCGCGCTCGACGTGTTGGTGGCC
TCCGCGGGGAGCATCGGCGCGGACACGCTCGCCAAGGGGAAGGCGGTTGT
GGCTGAGCTTACGGGACAGGCTGCTGTGCACGGTGAGATTTACGTCAAGG
CCATTGACAAGATCCTGGCGAAGGGCGCCGCGTACGTGGACACGGAGATG
GAGCGTTTGCAGAAACTACTAGGGGGGGATAACATAAGCCCGGAGAAGAA
GTTGTCGTTTTTGTTGAAGTTCAATATTTTGCGGGCCTTCCATGGGGAGC
CTGCCGAGGAGGTCTCTCTGACGGAGGAGCTCTAAATGAGGCTCTTCTCT
CTCCTGACCCTGGCAGTAGTGGCGACGGCGGTGCAGGCTGCGGTCGTGGT
CCTGACCCCTGCCAACTTCGATCAGATTGTCGACGGCACTCGTAATGTCC
TCGTCGAATTCTACGCTCCGTGGTGCGGGCACTGCAAGACCCTAGCCCCC
GAGTACGAAATTGCCGGGGACACCTACAAGGCCGGTGACGGTGTGGTCAT
CGCCAAGGTCGATGCCGACGCCGAACGCAGCCTGGGCGAGCGTTTTGAGG
TGAAGGGCTTCCCCACCCTGAAGTGGTTCCCTAAGGGGAGTACCAGCCCC
GAGGATTACGATGGTGGCCGCACAGCCGACACGATTGTTTCGTGGGTGAA
TGGAAAGACTGGTCTGACCCGCAAGATTAAGAAGACGCCCTCCGCAGTGG
TGGAATTGACGGCGGCGAACTTTGATTCCATTGCCATGGACCCGACGAAA
GACGTTCTCGTCGGTTTCACCGCACCGTGGTGTGGGCACTGCAAAACCCT
CGTGCCCAAATACGAGGCCGTGGCAAAAATCTTCGCGGGAGAGAAGGACG
TGATCGTTGCCAAGGTAGACGCCACAGAACAACGCGATCTCGCCACCCGC
TTCGACGTCTCGGGCTACCCCACCTTGAAGTTCTTCCCCAAGGGCGAGGA
CAAAGAGGCGCAGACCTACGACAAGAGTCGTGAAATCAGCGGCTTCGTCG
CTTTCTTGAACGAAAAAGCTGGGACGGCATACACGGCGGAGGGAGGTCTC
CTGCCGTCTGCGGGGCGTATCCCCGCGCTCGACGTGTTGGTGGCCTCCGC
GGGGAGCATCGGCGCGGACACGCTCGCCAAGGGGAAGGCGGTTGTGGCTG
AGCTTACGGGACAGGCTGCTGTGCACGGTGAGATTTACGTCAAGGCCATT
GACAAGATCCTGGCGAAGGGCGCCGCGTACGTGGACACGGAGATGGAGCG
TTTGCAGAAACTACTAGGGGGGGATAACATAAGCCCGGAGAAGAAGTTGT
CGTTTTTGTTGAAGTTCAATATTTTGCGGGCCTTCCATGGGGAGCCTGCC
GAGGAGGTCTCTCTGACGGAGGAGCTCTAA

Synonyms

Publications