jgi.p|Nanoce1779_2|572621, mRNA_1535 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|572621
Unique NamemRNA_1535
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1595
Alignment locationscaffold_1:887441..889035 +

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Properties
Property NameValue
TranscriptId572707
TrackFilteredModels2
ProteinId572621
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:887441..889035 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572621gene_1535Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572621mRNA_1535-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1535CDS_1535Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1535 ID=mRNA_1535|Name=jgi.p|Nanoce1779_2|572621|organism=Nannochloropsis oceanica|type=mRNA|length=1595bp
ACAGGACAATAAGATGCCACCCTTCGCCCCTAACAGGGGAGGCTCGCGCT
GTCTCGGTTGTGGCAGCCTGGTGATCATCATCGTGCTCGCTTCATCAGCA
TCATCCTCGGTTGCCTTCGGCCCGCCTTTTCGCACTGCTTTGCCGCGTCT
ACACCGCATATCATTGCCCTACGGTAGCAGCGCCGGCAGCAGCTCGTTCC
CGAACGTGCGAAGAACCTCCTTGCCATGTGCACCCTTGTCTTCTCCTTCT
GGTTTCGCGAATTACCGCATATTGCCTACCCTCTTTACCCGGCCAAGCTC
GAGCGAGGACCAAGAAGCACGACAAGTCGACCTTTCCGGACAACCACGCT
GGCGTCGCGCTGCCAACCATCTATTTACAGCCTGGAGAAGAATACAGCAC
CAACGTGTATTCCTCATGCAACCCTTACAAAGCTCAGCCATGGCTTCACC
CCCTGGTGAAAGTGGGGACGCGTGGGGGGCGAGTGAATTGCCTTCCTACA
AAATCAGACCCGATTGGGCTCCAGCTTGGGTACCTACGTGGGCAGTAACG
CTGCATCCGCTCATTCAAGTCGTCATTATGATAGCTTTGTATTTTTTTCA
CATGCTCGTGTTGAGTAAACTGGCCATGCCCTTCCCCTTTCAGTTGGTGC
CGAATTCCCATGGTCTGTTTCAGAGCATTGGCATGGACTCACTTGCCGGC
TTGCTCGTCCTGGGCATCATGGCCTACTTTCGTCATTCACGCGGGCTGCC
CATGCGGCCTATTATTTTTGGGGATCGTCCGCTGCCGTTTAACCCCCCGA
AGAAAGGAAGGGGGAAGGTGTGGCGGATTTTGGCCTTGTTGATGGTGGCT
TATCTGACGTCAGGCTCGGCGAGCAAGTGGGTGGAGGATGTATTTGGCTT
GTCGGACCTAAATGTGGCCTTAGGGAGGGCGGTGCAAGTGTTGGCGGGGC
ACTTGGTGTGGGTGACTTTGGGGGTGGCAATTTTGAAGATGCAGGCGGGG
GGACCAGGAAGGGGACCTTTCTTCGGGAAGAAGAGTGTCTGGATGAAATC
GACTTTCAACACGTATTGGTTGTGGTGGGCCATTGGGGGTTACTACGTCT
CATCGTTGGCGTTCCACGTGGCAGACACCATCAATCAGGTGGTGTTGCCG
GCGTCGGCGTTTGAGGTTGACTCGGTTGTGACTCAGATGATTAATCCGGA
GGGGAATGATGTAATGGCTATGTTGGTTGGATCGCTTGCCCCCTGTGTGT
CGGCGCCTTGGTGGGAAGAGGTATTGTATCGTGGATTTTTATTGCCAGCC
TTGTATCTGTTTTATCCTCCCGATGTGGCGACGCTTGTGAGTGCGGTGAT
ATTTGCAGCGCACCACATGAGTATGAGTGGAATGATTCCCTTGACGACCT
TAGGTTACTTATGGGCGGTCCTGTATCTTTTGTCGGGCAACCTACTCGTA
CCCATAGCCATTCACTCGCTTTGGAACTCGCGTGTGTTTTTGGGTTCTCT
TCTTGGTATCTAGTACGCACGGTAATGTGCAAAACATGTGTATCAGAATT
AAACGAGCTAAAGCAAAACGTTTGCTACCGTGATAGAGAGGAAAA
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protein sequence of jgi.p|Nanoce1779_2|572621

>mRNA_1535-protein ID=mRNA_1535-protein|Name=jgi.p|Nanoce1779_2|572621|organism=Nannochloropsis oceanica|type=polypeptide|length=500bp
MPPFAPNRGGSRCLGCGSLVIIIVLASSASSSVAFGPPFRTALPRLHRIS
LPYGSSAGSSSFPNVRRTSLPCAPLSSPSGFANYRILPTLFTRPSSSEDQ
EARQVDLSGQPRWRRAANHLFTAWRRIQHQRVFLMQPLQSSAMASPPGES
GDAWGASELPSYKIRPDWAPAWVPTWAVTLHPLIQVVIMIALYFFHMLVL
SKLAMPFPFQLVPNSHGLFQSIGMDSLAGLLVLGIMAYFRHSRGLPMRPI
IFGDRPLPFNPPKKGRGKVWRILALLMVAYLTSGSASKWVEDVFGLSDLN
VALGRAVQVLAGHLVWVTLGVAILKMQAGGPGRGPFFGKKSVWMKSTFNT
YWLWWAIGGYYVSSLAFHVADTINQVVLPASAFEVDSVVTQMINPEGNDV
MAMLVGSLAPCVSAPWWEEVLYRGFLLPALYLFYPPDVATLVSAVIFAAH
HMSMSGMIPLTTLGYLWAVLYLLSGNLLVPIAIHSLWNSRVFLGSLLGI*
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mRNA from alignment at scaffold_1:887441..889035+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1535 ID=mRNA_1535|Name=jgi.p|Nanoce1779_2|572621|organism=Nannochloropsis oceanica|type=mRNA|length=1595bp|location=Sequence derived from alignment at scaffold_1:887441..889035+ (Nannochloropsis oceanica)
ACAGGACAATAAGATGCCACCCTTCGCCCCTAACAGGGGAGGCTCGCGCT
GTCTCGGTTGTGGCAGCCTGGTGATCATCATCGTGCTCGCTTCATCAGCA
TCATCCTCGGTTGCCTTCGGCCCGCCTTTTCGCACTGCTTTGCCGCGTCT
ACACCGCATATCATTGCCCTACGGTAGCAGCGCCGGCAGCAGCTCGTTCC
CGAACGTGCGAAGAACCTCCTTGCCATGTGCACCCTTGTCTTCTCCTTCT
GGTTTCGCGAATTACCGCATATTGCCTACCCTCTTTACCCGGCCAAGCTC
GAGCGAGGACCAAGAAGCACGACAAGTCGACCTTTCCGGACAACCACGCT
GGCGTCGCGCTGCCAACCATCTATTTACAGCCTGGAGAAGAATACAGCAC
CAACGTGTATTCCTCATGCAACCCTTACAAAGCTCAGCCATGGCTTCACC
CCCTGGTGAAAGTGGGGACGCGTGGGGGGCGAGTGAATTGCCTTCCTACA
AAATCAGACCCGATTGGGCTCCAGCTTGGGTACCTACGTGGGCAGTAACG
CTGCATCCGCTCATTCAAGTCGTCATTATGATAGCTTTGTATTTTTTTCA
CATGCTCGTGTTGAGTAAACTGGCCATGCCCTTCCCCTTTCAGTTGGTGC
CGAATTCCCATGGTCTGTTTCAGAGCATTGGCATGGACTCACTTGCCGGC
TTGCTCGTCCTGGGCATCATGGCCTACTTTCGTCATTCACGCGGGCTGCC
CATGCGGCCTATTATTTTTGGGGATCGTCCGCTGCCGTTTAACCCCCCGA
AGAAAGGAAGGGGGAAGGTGTGGCGGATTTTGGCCTTGTTGATGGTGGCT
TATCTGACGTCAGGCTCGGCGAGCAAGTGGGTGGAGGATGTATTTGGCTT
GTCGGACCTAAATGTGGCCTTAGGGAGGGCGGTGCAAGTGTTGGCGGGGC
ACTTGGTGTGGGTGACTTTGGGGGTGGCAATTTTGAAGATGCAGGCGGGG
GGACCAGGAAGGGGACCTTTCTTCGGGAAGAAGAGTGTCTGGATGAAATC
GACTTTCAACACGTATTGGTTGTGGTGGGCCATTGGGGGTTACTACGTCT
CATCGTTGGCGTTCCACGTGGCAGACACCATCAATCAGGTGGTGTTGCCG
GCGTCGGCGTTTGAGGTTGACTCGGTTGTGACTCAGATGATTAATCCGGA
GGGGAATGATGTAATGGCTATGTTGGTTGGATCGCTTGCCCCCTGTGTGT
CGGCGCCTTGGTGGGAAGAGGTATTGTATCGTGGATTTTTATTGCCAGCC
TTGTATCTGTTTTATCCTCCCGATGTGGCGACGCTTGTGAGTGCGGTGAT
ATTTGCAGCGCACCACATGAGTATGAGTGGAATGATTCCCTTGACGACCT
TAGGTTACTTATGGGCGGTCCTGTATCTTTTGTCGGGCAACCTACTCGTA
CCCATAGCCATTCACTCGCTTTGGAACTCGCGTGTGTTTTTGGGTTCTCT
TCTTGGTATCTAGTACGCACGGTAATGTGCAAAACATGTGTATCAGAATT
AAACGAGCTAAAGCAAAACGTTTGCTACCGTGATAGAGAGGAAAA
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Coding sequence (CDS) from alignment at scaffold_1:887441..889035+

>mRNA_1535 ID=mRNA_1535|Name=jgi.p|Nanoce1779_2|572621|organism=Nannochloropsis oceanica|type=CDS|length=1500bp|location=Sequence derived from alignment at scaffold_1:887441..889035+ (Nannochloropsis oceanica)
ATGCCACCCTTCGCCCCTAACAGGGGAGGCTCGCGCTGTCTCGGTTGTGG
CAGCCTGGTGATCATCATCGTGCTCGCTTCATCAGCATCATCCTCGGTTG
CCTTCGGCCCGCCTTTTCGCACTGCTTTGCCGCGTCTACACCGCATATCA
TTGCCCTACGGTAGCAGCGCCGGCAGCAGCTCGTTCCCGAACGTGCGAAG
AACCTCCTTGCCATGTGCACCCTTGTCTTCTCCTTCTGGTTTCGCGAATT
ACCGCATATTGCCTACCCTCTTTACCCGGCCAAGCTCGAGCGAGGACCAA
GAAGCACGACAAGTCGACCTTTCCGGACAACCACGCTGGCGTCGCGCTGC
CAACCATCTATTTACAGCCTGGAGAAGAATACAGCACCAACGTGTATTCC
TCATGCAACCCTTACAAAGCTCAGCCATGGCTTCACCCCCTGGTGAAAGT
GGGGACGCGTGGGGGGCGAGTGAATTGCCTTCCTACAAAATCAGACCCGA
TTGGGCTCCAGCTTGGGTACCTACGTGGGCAGTAACGCTGCATCCGCTCA
TTCAAGTCGTCATTATGATAGCTTTGTATTTTTTTCACATGCTCGTGTTG
AGTAAACTGGCCATGCCCTTCCCCTTTCAGTTGGTGCCGAATTCCCATGG
TCTGTTTCAGAGCATTGGCATGGACTCACTTGCCGGCTTGCTCGTCCTGG
GCATCATGGCCTACTTTCGTCATTCACGCGGGCTGCCCATGCGGCCTATT
ATTTTTGGGGATCGTCCGCTGCCGTTTAACCCCCCGAAGAAAGGAAGGGG
GAAGGTGTGGCGGATTTTGGCCTTGTTGATGGTGGCTTATCTGACGTCAG
GCTCGGCGAGCAAGTGGGTGGAGGATGTATTTGGCTTGTCGGACCTAAAT
GTGGCCTTAGGGAGGGCGGTGCAAGTGTTGGCGGGGCACTTGGTGTGGGT
GACTTTGGGGGTGGCAATTTTGAAGATGCAGGCGGGGGGACCAGGAAGGG
GACCTTTCTTCGGGAAGAAGAGTGTCTGGATGAAATCGACTTTCAACACG
TATTGGTTGTGGTGGGCCATTGGGGGTTACTACGTCTCATCGTTGGCGTT
CCACGTGGCAGACACCATCAATCAGGTGGTGTTGCCGGCGTCGGCGTTTG
AGGTTGACTCGGTTGTGACTCAGATGATTAATCCGGAGGGGAATGATGTA
ATGGCTATGTTGGTTGGATCGCTTGCCCCCTGTGTGTCGGCGCCTTGGTG
GGAAGAGGTATTGTATCGTGGATTTTTATTGCCAGCCTTGTATCTGTTTT
ATCCTCCCGATGTGGCGACGCTTGTGAGTGCGGTGATATTTGCAGCGCAC
CACATGAGTATGAGTGGAATGATTCCCTTGACGACCTTAGGTTACTTATG
GGCGGTCCTGTATCTTTTGTCGGGCAACCTACTCGTACCCATAGCCATTC
ACTCGCTTTGGAACTCGCGTGTGTTTTTGGGTTCTCTTCTTGGTATCTAG
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Synonyms
Publications