jgi.p|Nanoce1779_2|10216, mRNA_1534 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|10216
Unique NamemRNA_1534
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length851
Alignment locationscaffold_1:885893..887309 -

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Properties
Property NameValue
TranscriptId10302
TrackFilteredModels2
ProteinId10216
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:885893..887309 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|10216gene_1534Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|10216mRNA_1534-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1534CDS_1534Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1534 ID=mRNA_1534|Name=jgi.p|Nanoce1779_2|10216|organism=Nannochloropsis oceanica|type=mRNA|length=851bp
ACGCATTACGCTACCAATCGATAATATCGTTCGTTTGGTGATCTGTGCCC
CAATGATATCTGTAATTTGGTGCTGAAGCTGTCCATTTCCCTTTCACGCG
CAAGACATACAGGCCTTTGCGCCTCTCCCTTCTCTTCCTGTACCATGAGA
CGGATTCGCCTAGCCTGGAATGTCTCATCTCACAGCATGAGGAGAGGCAT
CGTGCGACTGAGGACACTTGTACCCCCGCATTCTCGAGCCATCACCAGCA
AGCCCTACCTATGCAGAAATCAAGACGATAGCAGCAGTAGCGGTCACAAT
AGCCCGTTGGTGCCGCCATCCACCTGGTCCCTCCACGATTTGGGATTGCT
GCACAAGGATGCAGTCGCGGGGGCAGGGAGCGACGCCTTGAACGAAGACG
AGCTATCACGGCTAGCTGGATATGCACATTTGGATTTGGACGGGGTGAAC
GTCGATCGGGAGTCCTTGCAGCGGGACCTTGGGGCCATTATCAATTGCAT
GACATTGCTGCAGACGGCGGACCTAAGTGACGTGAGCAAGGAGGAGATGT
ATGCGCCGCCTGAATACGCCCAAGCATCGGCACGCCTAAGAAAAGATGTG
GTCACGGAAGGAGGACTGGACAAGGAGGATCAGGTGCTGGCTAATACCAA
GGAGACAGCCCATAATCAGTTTGTCGTCCCGCTCGTCAACTGCAAGTGAG
ATTTCGATGCATAAAGTTCCACACAATAAAGTTGATTCAGCGTTAGAAGG
GTGGGATTTGTAATTCAAATAAGCTCGACAGTCGGAAGCACCGGTGGACG
AAATGCAAGGCATCTTTCCTTTTCCTCCACAGCGACCTCACCGACTGGCT
T
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protein sequence of jgi.p|Nanoce1779_2|10216

>mRNA_1534-protein ID=mRNA_1534-protein|Name=jgi.p|Nanoce1779_2|10216|organism=Nannochloropsis oceanica|type=polypeptide|length=185bp
MRRIRLAWNVSSHSMRRGIVRLRTLVPPHSRAITSKPYLCRNQDDSSSSG
HNSPLVPPSTWSLHDLGLLHKDAVAGAGSDALNEDELSRLAGYAHLDLDG
VNVDRESLQRDLGAIINCMTLLQTADLSDVSKEEMYAPPEYAQASARLRK
DVVTEGGLDKEDQVLANTKETAHNQFVVPLVNCK*
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mRNA from alignment at scaffold_1:885893..887309-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1534 ID=mRNA_1534|Name=jgi.p|Nanoce1779_2|10216|organism=Nannochloropsis oceanica|type=mRNA|length=1417bp|location=Sequence derived from alignment at scaffold_1:885893..887309- (Nannochloropsis oceanica)
ACGCATTACGCTACCAATCGATAATATCGTTCGTTTGGTGATCTGTGCCC
CAATGATATCTGTAATTTGGTGCTGAAGCTGTCCATTTCCCTTTCACGCG
CAAGACATACAGGCCTTTGCGCCTCTCCCTTCTCTTCCTGTACCATGAGA
CGGATTCGCCTAGCCTGGAATGTCTCATCTCACAGCATGAGGAGAGGCAT
CGTGCGACTGAGGTACGTTCGTTGAATTCACCGTCATGTAGTGGCATGTG
TGTGTATGGCGCTTTCCATTCCTTGTCCTCTCCTCAGTTATGTTGCCCCT
CATCTCCTCTCACCTTCACCCAATTGTGCAGGACACTTGTACCCCCGCAT
TCTCGAGCCATCACCAGCAAGCCCTACCTATGCAGAAATCAAGACGATAG
CAGCAGTAGCGGTCACAATAGCCCGTTGGTGCCGCCATCCACCTGGTCCC
TCCACGATTTGGGATTGCTGCACAAGGATGCAGTCGCGGGGGCAGGGAGC
GACGCCTTGAACGAAGACGAGGTAGGGAGATCAGAAGGGGGAGGCATTTT
GCGTCTGAAGCAATTGTTGTTCTCGCCAATAAAAGGATTCAGAAAGTTGT
TGGGAATGGGTGGTGTGTGTACATAGGTTCCAATATATGCAGGCGCTGAG
TCCGCACGTTGCATGTCTCCGTTCAACTTATTTTTCTTTATTTTCCCCCT
TGCTCACGCATATGATAATGGTCAGCTATCACGGCTAGCTGGATATGCAC
ATTTGGATTTGGACGGGGTGAACGTCGATCGGGAGTCCTTGCAGCGGGAC
CTTGGGGCCATTATCAATTGCATGACATTGCTGCAGGTCTGTCTGTTACT
GCTCTCTCTTTAATTGAGTGAATTCGGGACGAGTTGAGGACCATATACTT
CAGAAACAAGGTCAAGGTCATTCAAATCTCTCATACTCATAATATTTTGT
CAAACGTAGACGGCGGACCTAAGTGACGTGAGCAAGGAGGAGATGTATGC
GCCGCCTGAATACGCCCAAGCATCGGCACGCCTAAGAAAAGATGTGGTCA
CGGAAGGAGGTGAGATTGTAGGGAATCGGAGGAAGAGAGCAATATTTTGG
GTGCTTAAACATCTTCAGTCATTTTTGTCACATCATACTCCCACATCTAT
ATACTTCGCCCGCACATCTCTGATTGCAGGACTGGACAAGGAGGATCAGG
TGCTGGCTAATACCAAGGAGACAGCCCATAATCAGTTTGTCGTCCCGCTC
GTCAACTGCAAGTGAGATTTCGATGCATAAAGTTCCACACAATAAAGTTG
ATTCAGCGTTAGAAGGGTGGGATTTGTAATTCAAATAAGCTCGACAGTCG
GAAGCACCGGTGGACGAAATGCAAGGCATCTTTCCTTTTCCTCCACAGCG
ACCTCACCGACTGGCTT
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Coding sequence (CDS) from alignment at scaffold_1:885893..887309-

>mRNA_1534 ID=mRNA_1534|Name=jgi.p|Nanoce1779_2|10216|organism=Nannochloropsis oceanica|type=CDS|length=2775bp|location=Sequence derived from alignment at scaffold_1:885893..887309- (Nannochloropsis oceanica)
GACTGGACAAGGAGGATCAGGTGCTGGCTAATACCAAGGAGACAGCCCAT
AATCAGTTTGTCGTCCCGCTCGTCAACTGCAAGTGAACGGCGGACCTAAG
TGACGTGAGCAAGGAGGAGATGTATGCGCCGCCTGAATACGCCCAAGCAT
CGGCACGCCTAAGAAAAGATGTGGTCACGGAAGGAGCTATCACGGCTAGC
TGGATATGCACATTTGGATTTGGACGGGGTGAACGTCGATCGGGAGTCCT
TGCAGCGGGACCTTGGGGCCATTATCAATTGCATGACATTGCTGCAGGAC
ACTTGTACCCCCGCATTCTCGAGCCATCACCAGCAAGCCCTACCTATGCA
GAAATCAAGACGATAGCAGCAGTAGCGGTCACAATAGCCCGTTGGTGCCG
CCATCCACCTGGTCCCTCCACGATTTGGGATTGCTGCACAAGGATGCAGT
CGCGGGGGCAGGGAGCGACGCCTTGAACGAAGACGAGATGAGACGGATTC
GCCTAGCCTGGAATGTCTCATCTCACAGCATGAGGAGAGGCATCGTGCGA
CTGAGGACTGGACAAGGAGGATCAGGTGCTGGCTAATACCAAGGAGACAG
CCCATAATCAGTTTGTCGTCCCGCTCGTCAACTGCAAGTGAACGGCGGAC
CTAAGTGACGTGAGCAAGGAGGAGATGTATGCGCCGCCTGAATACGCCCA
AGCATCGGCACGCCTAAGAAAAGATGTGGTCACGGAAGGAGCTATCACGG
CTAGCTGGATATGCACATTTGGATTTGGACGGGGTGAACGTCGATCGGGA
GTCCTTGCAGCGGGACCTTGGGGCCATTATCAATTGCATGACATTGCTGC
AGGACACTTGTACCCCCGCATTCTCGAGCCATCACCAGCAAGCCCTACCT
ATGCAGAAATCAAGACGATAGCAGCAGTAGCGGTCACAATAGCCCGTTGG
TGCCGCCATCCACCTGGTCCCTCCACGATTTGGGATTGCTGCACAAGGAT
GCAGTCGCGGGGGCAGGGAGCGACGCCTTGAACGAAGACGAGATGAGACG
GATTCGCCTAGCCTGGAATGTCTCATCTCACAGCATGAGGAGAGGCATCG
TGCGACTGAGGACTGGACAAGGAGGATCAGGTGCTGGCTAATACCAAGGA
GACAGCCCATAATCAGTTTGTCGTCCCGCTCGTCAACTGCAAGTGAACGG
CGGACCTAAGTGACGTGAGCAAGGAGGAGATGTATGCGCCGCCTGAATAC
GCCCAAGCATCGGCACGCCTAAGAAAAGATGTGGTCACGGAAGGAGCTAT
CACGGCTAGCTGGATATGCACATTTGGATTTGGACGGGGTGAACGTCGAT
CGGGAGTCCTTGCAGCGGGACCTTGGGGCCATTATCAATTGCATGACATT
GCTGCAGGACACTTGTACCCCCGCATTCTCGAGCCATCACCAGCAAGCCC
TACCTATGCAGAAATCAAGACGATAGCAGCAGTAGCGGTCACAATAGCCC
GTTGGTGCCGCCATCCACCTGGTCCCTCCACGATTTGGGATTGCTGCACA
AGGATGCAGTCGCGGGGGCAGGGAGCGACGCCTTGAACGAAGACGAGATG
AGACGGATTCGCCTAGCCTGGAATGTCTCATCTCACAGCATGAGGAGAGG
CATCGTGCGACTGAGGACTGGACAAGGAGGATCAGGTGCTGGCTAATACC
AAGGAGACAGCCCATAATCAGTTTGTCGTCCCGCTCGTCAACTGCAAGTG
AACGGCGGACCTAAGTGACGTGAGCAAGGAGGAGATGTATGCGCCGCCTG
AATACGCCCAAGCATCGGCACGCCTAAGAAAAGATGTGGTCACGGAAGGA
GCTATCACGGCTAGCTGGATATGCACATTTGGATTTGGACGGGGTGAACG
TCGATCGGGAGTCCTTGCAGCGGGACCTTGGGGCCATTATCAATTGCATG
ACATTGCTGCAGGACACTTGTACCCCCGCATTCTCGAGCCATCACCAGCA
AGCCCTACCTATGCAGAAATCAAGACGATAGCAGCAGTAGCGGTCACAAT
AGCCCGTTGGTGCCGCCATCCACCTGGTCCCTCCACGATTTGGGATTGCT
GCACAAGGATGCAGTCGCGGGGGCAGGGAGCGACGCCTTGAACGAAGACG
AGATGAGACGGATTCGCCTAGCCTGGAATGTCTCATCTCACAGCATGAGG
AGAGGCATCGTGCGACTGAGGACTGGACAAGGAGGATCAGGTGCTGGCTA
ATACCAAGGAGACAGCCCATAATCAGTTTGTCGTCCCGCTCGTCAACTGC
AAGTGAACGGCGGACCTAAGTGACGTGAGCAAGGAGGAGATGTATGCGCC
GCCTGAATACGCCCAAGCATCGGCACGCCTAAGAAAAGATGTGGTCACGG
AAGGAGCTATCACGGCTAGCTGGATATGCACATTTGGATTTGGACGGGGT
GAACGTCGATCGGGAGTCCTTGCAGCGGGACCTTGGGGCCATTATCAATT
GCATGACATTGCTGCAGGACACTTGTACCCCCGCATTCTCGAGCCATCAC
CAGCAAGCCCTACCTATGCAGAAATCAAGACGATAGCAGCAGTAGCGGTC
ACAATAGCCCGTTGGTGCCGCCATCCACCTGGTCCCTCCACGATTTGGGA
TTGCTGCACAAGGATGCAGTCGCGGGGGCAGGGAGCGACGCCTTGAACGA
AGACGAGATGAGACGGATTCGCCTAGCCTGGAATGTCTCATCTCACAGCA
TGAGGAGAGGCATCGTGCGACTGAG
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Synonyms
Publications