jgi.p|Nanoce1779_2|626856, mRNA_1531 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|626856
Unique Name	mRNA_1531
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1139
Alignment location	scaffold_1:871111..874278 +

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Properties


Property Name	Value
TranscriptId	626942
Track	FilteredModels2
ProteinId	626856

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_1	supercontig	scaffold_1:871111..874278 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|626856	gene_1531	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|626856	mRNA_1531-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1531	CDS_1531	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_1:871111..874278+
coding sequence from alignment at scaffold_1:871111..874278+

mRNA sequence

>mRNA_1531 ID=mRNA_1531|Name=jgi.p|Nanoce1779_2|626856|organism=Nannochloropsis oceanica|type=mRNA|length=1139bp
GGGGCTGCGGATGATGTCATTGTGTTGTCACTCGTCCTCAAGCCCAGCAG
CAGGACCTGGTTTTGTGTGTGCTGGAGCAACATGGCACGTAAAGTCAGTC
AACACCGCCGCAACCGACGACCGTCGTGACGTGTGAGGAGTTGACACGGG
GTTCCACACCAGTCTTGCTTGTGTCCCGTGCCCGAGTCTTGAGTGTGGCA
CCACAAGCACTCAATACTTCCACCGCCACCCTCACATACAGGTCCGTCAC
GTCGCCCTGTGTATTGTACCGGCGTCGGTGGCTGGCTCGTGGTGGTGGAT
GTTGCTCGCTCCATTGATGGCATGCCATAAGTTACCATCGAGCCAGGCCT
CCTCCACGTCCCTCCTGTGTCTTTGGTGTTGCCCTTTGGCACGCCATGGG
ATGGCCGTGTGGCCACCATATCGTGGCCAGGCGTGCGCGGGAAATGACGA
AGTGTAATGCCGAGGCGGCCGTGATCTCAAATGCTTTGTGGAAACCGACC
TCTCACACTCATTCGCCGTCCCTCCCCACAAGAAGACGCACTGGTTGGTT
GCTGCTTTGGTCAACCACAGCCATCAGAGAGAGCCACATGAGCATGCCTT
GGAGGTCCGCCACGAAGGCTGGAGCCATGGCATGGCGAGGGGGCGCGTTT
CCCGGTCCAGGGAAGGGACGCGCGCTGCGGGGGGCATTCCTGTCGACAAC
GCACACGGGTACTGGGAATGCAGGAGGCTCTGGAAGCATGCGGTTGCTCC
GAGGTTCCTTTGATATCAACGCATTGGCAGCTACTGTAGGTGTGACGATA
GCGGTTATCACCTCTACCGCTGTGGCCGTCCATCATTACGATGAGAACAT
GTCGGCGCTCAAACTGAAAGCAGAGGTCGCGCGGATGCAGGACATGGCGG
CGAAGGAGGTCGCCCATGCGAAAGCAAAAATCACTCAAGCGAAAGCAGAG
GTCGCGCGGGTCAAGGGCGAGCGGGAGTTGGCAGAACAAATGTGGAAGAA
TGAGGTGGAGCGTCACAAACGAGATGTACAACTTGCATATACACAAGATT
ACACGCCTTATCAGGCGGCGATTTCAAAGGGAAACGAAAAGAGGACAGGG
ACCGGAGGACCGCGAAAGGATGAGGAGAGGAAAGGGTAG

protein sequence of jgi.p|Nanoce1779_2|626856

>mRNA_1531-protein ID=mRNA_1531-protein|Name=jgi.p|Nanoce1779_2|626856|organism=Nannochloropsis oceanica|type=polypeptide|length=248bp
MGWPCGHHIVARRAREMTKCNAEAAVISNALWKPTSHTHSPSLPTRRRTG
WLLLWSTTAIRESHMSMPWRSATKAGAMAWRGGAFPGPGKGRALRGAFLS
TTHTGTGNAGGSGSMRLLRGSFDINALAATVGVTIAVITSTAVAVHHYDE
NMSALKLKAEVARMQDMAAKEVAHAKAKITQAKAEVARVKGERELAEQMW
KNEVERHKRDVQLAYTQDYTPYQAAISKGNEKRTGTGGPRKDEERKG*

mRNA from alignment at scaffold_1:871111..874278+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1531 ID=mRNA_1531|Name=jgi.p|Nanoce1779_2|626856|organism=Nannochloropsis oceanica|type=mRNA|length=3168bp|location=Sequence derived from alignment at scaffold_1:871111..874278+ (Nannochloropsis oceanica)
GGGGCTGCGGATGATGTCATTGTGTTGTCACTCGTCCTCAAGCCCAGCAG
CAGGACCTGGTTTTGTGTGTGCTGGAGCAACATGGCACGTAAAGTCAGTC
AACACCGCCGCAACCGACGACCGTCGTGACGTGTGAGGAGTTGACACGGG
GTTCCACACCAGTCTTGCTTGTGTCCCGTGCCCGAGTCTTGAGTGTGGCA
CCACAAGCACTCAATACTTCCACCGCCACCCTCACATACAGGTCCGTCAC
GTCGCCCTGTGTATTGTACCGGCGTCGGTGGCTGGCTCGTGGTGGTGGAT
GTTGCTCGCTCCATTGATGGCATGCCATAAGTTACCATCGAGCCAGGCCT
CCTCCACGTCCCTCCTGTGTCTTTGGTGTTGCCCTTTGGCACGCCATGGG
ATGGCCGTGTGGCCACCATATCGTGGCCAGGCGTGCGCGGGAAATGACGA
AGTGTAATGCCGAGGCGGCCGTGATCTCAAATGCTTTGTGGAAACCGACC
TCTCACACTCATTCGCCGTCCCTCCCCACAAGAAGACGCACTGGTTGGTT
GCTGCTTTGGTCAACCACAGCCATCAGAGAGAGCCACATGAGCATGCCTT
GGAGGTCCGCCACGAAGGCTGGAGCCATGGCATGGCGAGGGGGCGCGTTT
CCCGGTCCAGGTAGGGTCTTGTGAGGGTTTGATGTTAGGGTTGTAGGCGG
AAGGAGTGGGGGAACTGCCCGTGGCTTGTTTGATGACAGATTGTGCGGAT
GTCTGTCTTGTTTGAGAGTGAGTCTTTGTTGTGCGGGCAAGGGGCCGCGC
CAAGGTGTTCACGCACAAGCACATTCATACTCGCCAACAGGGAAGGGACG
CGCGCTGCGGGGGGCATTCCTGTCGACAACGCACACGGGTACTGGGAATA
CAGGAGGCTCTGGAAGCATGCGGTTGCTCCGAGGTTCCTTTGATATCAAC
GCATTGGCAGCTACTGTAGGTGTGACGATAGCGGTTATCACCTCTACCGC
TGTGGCCGTCCATCATTACGATGAGAACATGTCGGCGCTCAAACTGAAAG
CAGCGGTCGCTCAAGCGAAAGCAGAAGTCGCGCAGATGCAGGACATGGCG
GCGAAGGAGGTCGCCCATGCGAAAGCAAAAATCACTCAAGCGAAAGCAGA
GGTCGCGCGGGTCAAGGGCGAGCGGGAGTTGGCAGAACAAATGTGGAAGA
ATGAGGTGGAGCGTCACAAACGAGATGTACAACTTGCATATACACAAGAT
TACACGCCTTATCAGGCGGCGATTTCAAAGGGAAACGATAGGAGGACAGG
GACCGGAGGACCGCGAAAGGATGAGGAGAGGAAAGGGTAGCTTCCGGTAG
TCACTTGCGTGGATGTGCATTGAAGACCATGTAAAAGACGCATTTACAGA
CACTGTAGAGTAGCCAGGGTAATATGGTGGACAAGGGAGGATGGCTGGAG
GGGATGGGGTGCGTACACGGTCAACTCAACAACGAGCACTCCGTAAACTT
CCAACGCGCGAGTTTGTTTCCTTTCTCTATGGTTTGATTAGATTGTCTTG
CTCGTTTTGTCTCTTCCGCACGACCGCCGCCAACTGCGTATCCCACTTGC
TCAATCGTGCTCCCGGAATGTAAAGTGTCAATCAAGGAAGGCGATCTGTC
AAACCTGGTTTCACAAGCCTTGCTCGGGTTGAAAGCGCGGTGGGGAGGGA
GGGAGACGGGAGGTCATGATAGGGTGTACAATGTGAAATTGCGGTCGTCG
TGTGTTGACCAAAAGATGTGAGAAGCCGGGAGAAGAACCAGTACGGGGAC
TGCGGATGATGTCATTGTGTTGTCACTCGTCCTCAAGCCCAGCAGCAAGA
CCTGGTTTTGTGTGTGCTGGAGCAACATGGCACGTAAAGTCAGTCAACAC
CGCCGCAACCGACGACCGTCGTGACGTGTGAGGAGTTGACACGGGGTTCC
ACACCAGTCTTGCTTGTGTCCCGTGCCCGAGTCTTGAGTGTGGCACCACA
AGCACTCAATACTTCCACCGCCACCCTCACATACAGGTCCGTCACGTCGC
CCTGTGTATTGTACCGGCGTCGGTGGCTGGCTCGTGGTGGTGGATGTTGC
TCGCTCCATTGATGGCATGCCATAAGTTACCATCGAGCCAGGCCTCCTCC
ACGTCCCTCCTGTGTCTTTGGTGTTGCCCTTTGGCACGCCATGGGATGGC
CGTGTGGCCACCATATCGTGGCCAGGCGTGCGCGGGAAATGACGAAGTGT
AATGCCGAGGCGGCCGTGATCTCAAATGCTTTGTGGAAACCGACCTCTCA
CACTCATTCGCCGTCCCTCCCCACAAGAAGACGCACTGGTTGGTTGCTGC
TTTGGTCAACCACAGCCATCAGAGAGAGCCACATGAGCATGCCTTGGAGG
TCCGCCACGAAGGGTGGAGCCATGGCATGGCGAGGGGGCGCGTTTCCCGG
TCCAGGTAGGGTCTTGTGAGGGTTTGATATTAGGGTTGTAGGCGGAAGGA
GTGGGGGAACTGCCCGTGGCTTGTTTGATGACAGATTGTGCGGATGTCTG
TCTTGTTTGAGAGTGAGTCTTTGTTGTGCGGGCAAGGGGCCGCGCCAAGG
TGTTCACGCACAAGCACATTCATACTCGCCAACAGGGAAGGGACGCGCGC
TGCGGGGGGCATTCCTGTCGACAACGCACACGGGTACTGGGAATGCAGGA
GGCTCTGGAAGCATGCGGTTGCTCCGAGGTTCCTTTGATATCAACGCATT
GGCAGCTACTGTAGGTGTGACGATAGCGGTTATCACCTCTACCGCTGTGG
CCGTCCATCATTACGATGAGAACATGTCGGCGCTCAAACTGAAAGCAGAG
GTCGCGCGGATGCAGGACATGGCGGCGAAGGAGGTCGCTCAAGCGAAAGC
AGAAGTCGCGCAGATGCAGGACATGGCGGCGAAGGAGGTCGCCCATGCGA
AAGCAAAAATCACTCAAGCGAAAGCAGAGGTCGCGCGGGTCAAGGGCGAG
CGGGAGTTGGCAGAACAAATGTGGAAGAATGAGGTGGAGCGTCACAAACG
AGATGTACAACTTGCATATACACAAGATTACACGCCTTATCAGGCGGCGA
TTTCAAAGGGAAACGAAAAGAGGACAGGGACCGGAGGACCGCGAAAGGAT
GAGGAGAGGAAAGGGTAG

Coding sequence (CDS) from alignment at scaffold_1:871111..874278+

>mRNA_1531 ID=mRNA_1531|Name=jgi.p|Nanoce1779_2|626856|organism=Nannochloropsis oceanica|type=CDS|length=2232bp|location=Sequence derived from alignment at scaffold_1:871111..874278+ (Nannochloropsis oceanica)
ATGGGATGGCCGTGTGGCCACCATATCGTGGCCAGGCGTGCGCGGGAAAT
GACGAAGTGTAATGCCGAGGCGGCCGTGATCTCAAATGCTTTGTGGAAAC
CGACCTCTCACACTCATTCGCCGTCCCTCCCCACAAGAAGACGCACTGGT
TGGTTGCTGCTTTGGTCAACCACAGCCATCAGAGAGAGCCACATGAGCAT
GCCTTGGAGGTCCGCCACGAAGGCTGGAGCCATGGCATGGCGAGGGGGCG
CGTTTCCCGGTCCAGGGAAGGGACGCGCGCTGCGGGGGGCATTCCTGTCG
ACAACGCACACGGGTACTGGGAATGCAGGAGGCTCTGGAAGCATGCGGTT
GCTCCGAGGTTCCTTTGATATCAACGCATTGGCAGCTACTGTAGGTGTGA
CGATAGCGGTTATCACCTCTACCGCTGTGGCCGTCCATCATTACGATGAG
AACATGTCGGCGCTCAAACTGAAAGCAGAGGTCGCGCGGATGCAGGACAT
GGCGGCGAAGGAGGTCGCCCATGCGAAAGCAAAAATCACTCAAGCGAAAG
CAGAGGTCGCGCGGGTCAAGGGCGAGCGGGAGTTGGCAGAACAAATGTGG
AAGAATGAGGTGGAGCGTCACAAACGAGATGTACAACTTGCATATACACA
AGATTACACGCCTTATCAGGCGGCGATTTCAAAGGGAAACGAAAAGAGGA
CAGGGACCGGAGGACCGCGAAAGGATGAGGAGAGGAAAGGGTAGATGGGA
TGGCCGTGTGGCCACCATATCGTGGCCAGGCGTGCGCGGGAAATGACGAA
GTGTAATGCCGAGGCGGCCGTGATCTCAAATGCTTTGTGGAAACCGACCT
CTCACACTCATTCGCCGTCCCTCCCCACAAGAAGACGCACTGGTTGGTTG
CTGCTTTGGTCAACCACAGCCATCAGAGAGAGCCACATGAGCATGCCTTG
GAGGTCCGCCACGAAGGCTGGAGCCATGGCATGGCGAGGGGGCGCGTTTC
CCGGTCCAGGGAAGGGACGCGCGCTGCGGGGGGCATTCCTGTCGACAACG
CACACGGGTACTGGGAATGCAGGAGGCTCTGGAAGCATGCGGTTGCTCCG
AGGTTCCTTTGATATCAACGCATTGGCAGCTACTGTAGGTGTGACGATAG
CGGTTATCACCTCTACCGCTGTGGCCGTCCATCATTACGATGAGAACATG
TCGGCGCTCAAACTGAAAGCAGAGGTCGCGCGGATGCAGGACATGGCGGC
GAAGGAGGTCGCCCATGCGAAAGCAAAAATCACTCAAGCGAAAGCAGAGG
TCGCGCGGGTCAAGGGCGAGCGGGAGTTGGCAGAACAAATGTGGAAGAAT
GAGGTGGAGCGTCACAAACGAGATGTACAACTTGCATATACACAAGATTA
CACGCCTTATCAGGCGGCGATTTCAAAGGGAAACGAAAAGAGGACAGGGA
CCGGAGGACCGCGAAAGGATGAGGAGAGGAAAGGGTAGATGGGATGGCCG
TGTGGCCACCATATCGTGGCCAGGCGTGCGCGGGAAATGACGAAGTGTAA
TGCCGAGGCGGCCGTGATCTCAAATGCTTTGTGGAAACCGACCTCTCACA
CTCATTCGCCGTCCCTCCCCACAAGAAGACGCACTGGTTGGTTGCTGCTT
TGGTCAACCACAGCCATCAGAGAGAGCCACATGAGCATGCCTTGGAGGTC
CGCCACGAAGGCTGGAGCCATGGCATGGCGAGGGGGCGCGTTTCCCGGTC
CAGGGAAGGGACGCGCGCTGCGGGGGGCATTCCTGTCGACAACGCACACG
GGTACTGGGAATGCAGGAGGCTCTGGAAGCATGCGGTTGCTCCGAGGTTC
CTTTGATATCAACGCATTGGCAGCTACTGTAGGTGTGACGATAGCGGTTA
TCACCTCTACCGCTGTGGCCGTCCATCATTACGATGAGAACATGTCGGCG
CTCAAACTGAAAGCAGAGGTCGCGCGGATGCAGGACATGGCGGCGAAGGA
GGTCGCCCATGCGAAAGCAAAAATCACTCAAGCGAAAGCAGAGGTCGCGC
GGGTCAAGGGCGAGCGGGAGTTGGCAGAACAAATGTGGAAGAATGAGGTG
GAGCGTCACAAACGAGATGTACAACTTGCATATACACAAGATTACACGCC
TTATCAGGCGGCGATTTCAAAGGGAAACGAAAAGAGGACAGGGACCGGAG
GACCGCGAAAGGATGAGGAGAGGAAAGGGTAG

Synonyms

Publications