jgi.p|Nanoce1779_2|626852, mRNA_1530 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|626852
Unique Name	mRNA_1530
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1056
Alignment location	scaffold_1:867543..870561 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	626938
Track	FilteredModels2
ProteinId	626852

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_1	supercontig	scaffold_1:867543..870561 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|626852	gene_1530	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|626852	mRNA_1530-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1530	CDS_1530	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_1:867543..870561+
coding sequence from alignment at scaffold_1:867543..870561+

mRNA sequence

>mRNA_1530 ID=mRNA_1530|Name=jgi.p|Nanoce1779_2|626852|organism=Nannochloropsis oceanica|type=mRNA|length=1056bp
GGGACTGCGGATGATGTCATTGTGTTGTCACTCGTCCTCAAGCCCAGCAG
CAAGACCTGGTTTTGTGTGTGTTGGAGCAACATGGCACGTAAAGTCAGTC
AACACCGCCGCAACCGACGACCGTCGTGACGTGTGAGGAGTTGACACGGG
GTTCCACACCAGTCTTGCTTGTGTCCCGTGCCCGAGTCTTGAGTGTGGCA
CCACAAGCACTCAATACTTCCACCGCCACCCTCACATACAGGTCCGTCAC
ACGCCCTGTGTATTGTACCGGCGTCGGTGGCTGGCTCGTGGTGGTGGATG
TTGCTCGCTCCAATGATGGCATGCCATAAGTTACCATCGAGCCAGGCCTC
CTCCACGTCCCTCCTGTGTCTTTGGTGTTGCCCTTTGGCACGCCATGGGA
TGGCCGTGTGGCCACCATATCGTGGCCAGGCGTGCGCGGGAAATGACGAA
GTGTAATGCCGAGGCGGCCGTGATCTCAAATGCTTTGTGGAAACCGACCT
CTCACACTCATTCGCCGTCCCTCCCCACAAGAAGACGCACTGGTTGGTTG
CTGCTTTGGTCAACCACAGCCATCAGAGAGAGCCACATGAGCATGCCTTG
GAGGTCCGCCACGAAGGGTGGAGCCATGGCATGGCGAGGGGGCGCGTTTC
CCGGTCCAGGGAAGGGACGCGCGCTGCGGGGGGCATTCCTGTCGACAACG
CACACGGGTACTGGGAATGCAGGAGGCTCTGGAAGCATGCGGTTGCTCCG
AGGTTCCTTTGATATCAACGCATTGGCAGCTACTGTAGGTGTGACGATAG
CGGTTATCACCTCTACCGCTGTGGCCGTTCATCATTACGACGAGAACATG
TCGGCACTCAAACTGAAAGCAGAGGTCGCGCGGATGCAGGACATGGCGGC
GAAGGAGGTCACTCAAGCGAAAGCAGAGGTCGCGCGGATGCAGGACATGG
CGGCGAAGGAGGTCGCGCGGGTCAAGGGCGAGCGGGAGTTGGCAGAACAA
ATGTGGAAGAATGAGGTGGAGCGTCACAAACGAGATGTACAACTTGCATA
TACACA

protein sequence of jgi.p|Nanoce1779_2|626852

>mRNA_1530-protein ID=mRNA_1530-protein|Name=jgi.p|Nanoce1779_2|626852|organism=Nannochloropsis oceanica|type=polypeptide|length=220bp
MGWPCGHHIVARRAREMTKCNAEAAVISNALWKPTSHTHSPSLPTRRRTG
WLLLWSTTAIRESHMSMPWRSATKGGAMAWRGGAFPGPGKGRALRGAFLS
TTHTGTGNAGGSGSMRLLRGSFDINALAATVGVTIAVITSTAVAVHHYDE
NMSALKLKAEVARMQDMAAKEVTQAKAEVARMQDMAAKEVARVKGERELA
EQMWKNEVERHKRDVQLAYT

mRNA from alignment at scaffold_1:867543..870561+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1530 ID=mRNA_1530|Name=jgi.p|Nanoce1779_2|626852|organism=Nannochloropsis oceanica|type=mRNA|length=3019bp|location=Sequence derived from alignment at scaffold_1:867543..870561+ (Nannochloropsis oceanica)
GGGACTGCGGATGATGTCATTGTGTTGTCACTCGTCCTCAAGCCCAGCAG
CAAGACCTGGTTTTGTGTGTGTTGGAGCAACATGGCACGTAAAGTCAGTC
AACACCGCCGCAACCGACGACCGTCGTGACGTGTGAGGAGTTGACACGGG
GTTCCACACCAGTCTTGCTTGTGTCCCGTGCCCGAGTCTTGAGTGTGGCA
CCACAAGCACTCAATACTTCCACCGCCACCCTCACATACAGGTCCGTCAC
ACGCCCTGTGTATTGTACCGGCGTCGGTGGCTGGCTCGTGGTGGTGGATG
TTGCTCGCTCCAATGATGGCATGCCATAAGTTACCATCGAGCCAGGCCTC
CTCCACGTCCCTCCTGTGTCTTTGGTGTTGCCCTTTGGCACGCCATGGGA
TGGCCGTGTGGCCACCATATCGTGGCCAGGCGTGCGCGGGAAATGACGAA
GTGTAATGCCGAGGCGGCCGTGATCTCAAATGCTTTGTGGAAACCGACCT
CTCACACTCATTCGCCGTCCCTCCCCACAAGAAGACGCACTGGTTGGTTG
CTGCTTTGGTCAACCACAGCCATCAGAGAGAGCCACATGAGCATGCCTTG
GAGGTCCGCCACGAAGGGTGGAGCCATGGCATGGCGAGGGGGCGCGTTTC
CCGGTCCAGGTAGGGTCTTGTGAGGGTTTGATATTAGGGTTGTAGGCGGA
AGGAGTGGGGGAACTGCCCGTGGCTTGTTTGATGACAGATTGTGCGGATG
TCTGTCTTGTTTGAGAGTGAGTCTTTGTTGTGCGGGCAAGGGGCCGCGCC
AAGGTGTTCACGCACAAGCACATTCATACTCGCCAACAGGGAAGGGACGC
GCGCTGCGGGGGGCATTCCTGTCGACAACGCACACGGGTACTGGGAATGC
AGGAGGCTCTGGAAGCATGCGGTTGCTCCGAGGTTCCTTTGATATCAACG
CATTGGCAGCTACTGTAGGTGTGACGATAGCGGTTATCACCTCTACCGCT
GTGGCCGTTCATCATTACGACGAGAACATGTCGGCACTCAAACTGAAAGC
AGAGGTCGCGCGGATGCAGGACATGGCGGCGAAGGAGGTCGCTCAAGCGA
AAGCAGACGTCACTCAAGCGAAAGCAGAGGTCGCGCGGGTCAAGGGCGAG
CGGGAGTTGGCAGAACAAATGTGGAAGAATGAGGTGGAGCGCCACAAACG
AGATGTACAACTTGCATATACACAAGATTACACGCCTTATCAGGCGGCGA
TTTCAAAGGGAAACGATAGGAGGAAAGGGACCGGAGGACCGCAAAAGGAT
GAGGAGAAGAAAGGGTAGCTTCCGGTAGTCACTTGCGTGGATGTGCATTG
AAGACCATGTAAAAGACGCATTCAAAGACACTGTAGAGTAGCCAGGGTAA
TATGGTGGACAAGGGAGGGCGGCTAGAAGGGATGGGGCGCGTACACGGTC
AACTCAACAACGAGCACTCCGTAAACTTCCAACGCGCGAGTTTGTTTCCT
TTCTCTGTGGTTTGATTAGATTGTCTTGCTTGTTTTGTCTCTTCCGCACG
ACCGCCGCCAACTGCGTATCCCACTTGCTCAATCGTGCTCCCGGAATGTA
AAGTGTCAATCAAGGGAGGCGATCTGATAAACTTGGTTTCACAAGCCTTG
CTCGGGTTGAAAGCGCGGTGGGGAGGGAGGGAGACGGGAGGTCATGATAG
GGTGTACAATGTGAAATTGCGGTCGTCGTGTGTTGACCAAAAGATGTGAG
AAGCCGGGAGAAGAACCAGTACGGGGGCTGCGGATGATGTCATTGTGTTG
TCACTCGTCCTCAAGCCCAGCAGCAGGACCTGGTTTTGTGTGTGCTGGAG
CAACATGGCACGTAAAGTCAGTCAACACCGCCGCAACCGACGACCGTCGT
GACGTGTGAGGAGTTGACACGGGGTTCCACACCAGTCTTGCTTGTGTCCC
GTGCCCGAGTCTTGAGTGTGGCACCACAAGCACTCAATACTTCCACCGCC
ACCCTCACATACAGGTCCGTCACGTCGCCCTGTGTATTGTACCGGCGTCG
GTGGCTGGCTCGTGGTGGTGGATGTTGCTCGCTCCATTGATGGCATGCCA
TAAGTTACCATCGAGCCAGGCCTCCTCCACGTCCCTCCTGTGTCTTTGGT
GTTGCCCTTTGGCACGCCATGGGATGGCCGTGTGGCCACCATATCGTGGC
CAGGCGTGCGCGGGAAATGACGAAGTGTAATGCCGAGGCGGCCGTGATCT
CAAATGCTTTGTGGAAACCGACCTCTCACACTCATTCGCCGTCCCTCCCC
ACAAGAAGACGCACTGGTTGGTTGCTGCTTTGGTCAACCACAGCCATCAG
AGAGAGCCACATGAGCATGCCTTGGAGGTCCGCCACGAAGGCTGGAGCCA
TGGCATGGCGAGGGGGCGCGTTTCCCGGTCCAGGTAGGGTCTTGTGAGGG
TTTGATGTTAGGGTTGTAGGCGGAAGGAGTGGGGGAACTGCCCGTGGCTT
GTTTGATGACAGATTGTGCGGATGTCTGTCTTGTTTGAGAGTGAGTCTTT
GTTGTGCGGGCAAGGGGCCGCGCCAAGGTGTTCACGCACAAGCACATTCA
TACTCGCCAACAGGGAAGGGACGCGCGCTGCGGGGGGCATTCCTGTCGAC
AACGCACACGGGTACTGGGAATACAGGAGGCTCTGGAAGCATGCGGTTGC
TCCGAGGTTCCTTTGATATCAACGCATTGGCAGCTACTGTAGGTGTGACG
ATAGCGGTTATCACCTCTACCGCTGTGGCCGTCCATCATTACGATGAGAA
CATGTCGGCGCTCAAACTGAAAGCAGCGGTCGCTCAAGCGAAAGCAGAAG
TCGCGCAGATGCAGGACATGGCGGCGAAGGAGGTCGCCCATGCGAAAGCA
AAAATCACTCAAGCGAAAGCAGAGGTCGCGCGGGTCAAGGGCGAGCGGGA
GTTGGCAGAACAAATGTGGAAGAATGAGGTGGAGCGTCACAAACGAGATG
TACAACTTGCATATACACA

Coding sequence (CDS) from alignment at scaffold_1:867543..870561+

>mRNA_1530 ID=mRNA_1530|Name=jgi.p|Nanoce1779_2|626852|organism=Nannochloropsis oceanica|type=CDS|length=3300bp|location=Sequence derived from alignment at scaffold_1:867543..870561+ (Nannochloropsis oceanica)
ATGGGATGGCCGTGTGGCCACCATATCGTGGCCAGGCGTGCGCGGGAAAT
GACGAAGTGTAATGCCGAGGCGGCCGTGATCTCAAATGCTTTGTGGAAAC
CGACCTCTCACACTCATTCGCCGTCCCTCCCCACAAGAAGACGCACTGGT
TGGTTGCTGCTTTGGTCAACCACAGCCATCAGAGAGAGCCACATGAGCAT
GCCTTGGAGGTCCGCCACGAAGGGTGGAGCCATGGCATGGCGAGGGGGCG
CGTTTCCCGGTCCAGGGAAGGGACGCGCGCTGCGGGGGGCATTCCTGTCG
ACAACGCACACGGGTACTGGGAATGCAGGAGGCTCTGGAAGCATGCGGTT
GCTCCGAGGTTCCTTTGATATCAACGCATTGGCAGCTACTGTAGGTGTGA
CGATAGCGGTTATCACCTCTACCGCTGTGGCCGTTCATCATTACGACGAG
AACATGTCGGCACTCAAACTGAAAGCAGAGGTCGCGCGGATGCAGGACAT
GGCGGCGAAGGAGGTCACTCAAGCGAAAGCAGAGGTCGCGCGGATGCAGG
ACATGGCGGCGAAGGAGGTCGCGCGGGTCAAGGGCGAGCGGGAGTTGGCA
GAACAAATGTGGAAGAATGAGGTGGAGCGTCACAAACGAGATGTACAACT
TGCATATACAATGGGATGGCCGTGTGGCCACCATATCGTGGCCAGGCGTG
CGCGGGAAATGACGAAGTGTAATGCCGAGGCGGCCGTGATCTCAAATGCT
TTGTGGAAACCGACCTCTCACACTCATTCGCCGTCCCTCCCCACAAGAAG
ACGCACTGGTTGGTTGCTGCTTTGGTCAACCACAGCCATCAGAGAGAGCC
ACATGAGCATGCCTTGGAGGTCCGCCACGAAGGGTGGAGCCATGGCATGG
CGAGGGGGCGCGTTTCCCGGTCCAGGGAAGGGACGCGCGCTGCGGGGGGC
ATTCCTGTCGACAACGCACACGGGTACTGGGAATGCAGGAGGCTCTGGAA
GCATGCGGTTGCTCCGAGGTTCCTTTGATATCAACGCATTGGCAGCTACT
GTAGGTGTGACGATAGCGGTTATCACCTCTACCGCTGTGGCCGTTCATCA
TTACGACGAGAACATGTCGGCACTCAAACTGAAAGCAGAGGTCGCGCGGA
TGCAGGACATGGCGGCGAAGGAGGTCACTCAAGCGAAAGCAGAGGTCGCG
CGGATGCAGGACATGGCGGCGAAGGAGGTCGCGCGGGTCAAGGGCGAGCG
GGAGTTGGCAGAACAAATGTGGAAGAATGAGGTGGAGCGTCACAAACGAG
ATGTACAACTTGCATATACAATGGGATGGCCGTGTGGCCACCATATCGTG
GCCAGGCGTGCGCGGGAAATGACGAAGTGTAATGCCGAGGCGGCCGTGAT
CTCAAATGCTTTGTGGAAACCGACCTCTCACACTCATTCGCCGTCCCTCC
CCACAAGAAGACGCACTGGTTGGTTGCTGCTTTGGTCAACCACAGCCATC
AGAGAGAGCCACATGAGCATGCCTTGGAGGTCCGCCACGAAGGGTGGAGC
CATGGCATGGCGAGGGGGCGCGTTTCCCGGTCCAGGGAAGGGACGCGCGC
TGCGGGGGGCATTCCTGTCGACAACGCACACGGGTACTGGGAATGCAGGA
GGCTCTGGAAGCATGCGGTTGCTCCGAGGTTCCTTTGATATCAACGCATT
GGCAGCTACTGTAGGTGTGACGATAGCGGTTATCACCTCTACCGCTGTGG
CCGTTCATCATTACGACGAGAACATGTCGGCACTCAAACTGAAAGCAGAG
GTCGCGCGGATGCAGGACATGGCGGCGAAGGAGGTCACTCAAGCGAAAGC
AGAGGTCGCGCGGATGCAGGACATGGCGGCGAAGGAGGTCGCGCGGGTCA
AGGGCGAGCGGGAGTTGGCAGAACAAATGTGGAAGAATGAGGTGGAGCGT
CACAAACGAGATGTACAACTTGCATATACAATGGGATGGCCGTGTGGCCA
CCATATCGTGGCCAGGCGTGCGCGGGAAATGACGAAGTGTAATGCCGAGG
CGGCCGTGATCTCAAATGCTTTGTGGAAACCGACCTCTCACACTCATTCG
CCGTCCCTCCCCACAAGAAGACGCACTGGTTGGTTGCTGCTTTGGTCAAC
CACAGCCATCAGAGAGAGCCACATGAGCATGCCTTGGAGGTCCGCCACGA
AGGGTGGAGCCATGGCATGGCGAGGGGGCGCGTTTCCCGGTCCAGGGAAG
GGACGCGCGCTGCGGGGGGCATTCCTGTCGACAACGCACACGGGTACTGG
GAATGCAGGAGGCTCTGGAAGCATGCGGTTGCTCCGAGGTTCCTTTGATA
TCAACGCATTGGCAGCTACTGTAGGTGTGACGATAGCGGTTATCACCTCT
ACCGCTGTGGCCGTTCATCATTACGACGAGAACATGTCGGCACTCAAACT
GAAAGCAGAGGTCGCGCGGATGCAGGACATGGCGGCGAAGGAGGTCACTC
AAGCGAAAGCAGAGGTCGCGCGGATGCAGGACATGGCGGCGAAGGAGGTC
GCGCGGGTCAAGGGCGAGCGGGAGTTGGCAGAACAAATGTGGAAGAATGA
GGTGGAGCGTCACAAACGAGATGTACAACTTGCATATACAATGGGATGGC
CGTGTGGCCACCATATCGTGGCCAGGCGTGCGCGGGAAATGACGAAGTGT
AATGCCGAGGCGGCCGTGATCTCAAATGCTTTGTGGAAACCGACCTCTCA
CACTCATTCGCCGTCCCTCCCCACAAGAAGACGCACTGGTTGGTTGCTGC
TTTGGTCAACCACAGCCATCAGAGAGAGCCACATGAGCATGCCTTGGAGG
TCCGCCACGAAGGGTGGAGCCATGGCATGGCGAGGGGGCGCGTTTCCCGG
TCCAGGGAAGGGACGCGCGCTGCGGGGGGCATTCCTGTCGACAACGCACA
CGGGTACTGGGAATGCAGGAGGCTCTGGAAGCATGCGGTTGCTCCGAGGT
TCCTTTGATATCAACGCATTGGCAGCTACTGTAGGTGTGACGATAGCGGT
TATCACCTCTACCGCTGTGGCCGTTCATCATTACGACGAGAACATGTCGG
CACTCAAACTGAAAGCAGAGGTCGCGCGGATGCAGGACATGGCGGCGAAG
GAGGTCACTCAAGCGAAAGCAGAGGTCGCGCGGATGCAGGACATGGCGGC
GAAGGAGGTCGCGCGGGTCAAGGGCGAGCGGGAGTTGGCAGAACAAATGT
GGAAGAATGAGGTGGAGCGTCACAAACGAGATGTACAACTTGCATATACA

Synonyms

Publications