jgi.p|Nanoce1779_2|627664, mRNA_153 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|627664
Unique Name	mRNA_153
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1829
Alignment location	scaffold_3:395836..397664 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	627750
Track	FilteredModels2
ProteinId	627664

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:395836..397664 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|627664	gene_153	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|627664	mRNA_153-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_153	CDS_153	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:395836..397664+
coding sequence from alignment at scaffold_3:395836..397664+

mRNA sequence

>mRNA_153 ID=mRNA_153|Name=jgi.p|Nanoce1779_2|627664|organism=Nannochloropsis oceanica|type=mRNA|length=1829bp
ACTTACACTTCACATGCCCACTCCCCTGTGATGCGATCTCTGCGTACGTT
CCCAACCTCGGGCCTCCCGACCTCATTCGTCCTTGCTGACAAAAGCTAAA
ACTACTCGATACACACACAAGAATCTAACACAAACAAGCTTTTTTCGTCG
TGGGCGTGAAGATGCAGGAGGAAGTGTTGGCGGTGAAATTCAATCCATTT
CCCCTGCAGCAGCGAGAGGCCCACACAGCCTCTCCTCCCCTCGACACCTA
TCTGCTCTTGTGCGTCGGCGGTCTGGAGGAGGATGCTGTGGCGGCAGCTC
GGGCCTATTTTCATGCCAGACAGGGCAGCGAGGAATGGGTAGAGAAGAGG
GATGGGAGGGTCGGAGACGCAGCGTCTTCTCCATGGACAGCACACTTCCG
CGTCTTTGAAATAGACGACGAGGACCGCGTTGGCAACGCAGGGTGTGGGA
AGCTTATCCTGGACACAAATGTGCCCATGAAAGTTGTCTTGGCATTACCG
TTCCTCCTAGGTGTTCTGGCATACGTGGGGGAAGATCACTTCCTGTCACC
AGAGCGGGAGGCGGGCTTAGCCCATTTGCGTGCCGTGACCCACGATGCCA
GCCATTGGGATGCAGCCATAAACCTGTGGGCCCGTGCACGCGACTTTTAT
ACTAGGGATACCATCCGTACTGACATCCCATTAGGCCTGACCTGGACCGA
AAAGCTCAAGTCTACGACCGAGCCTCTAAACGTGAAATTTCGCGCGTCCG
TCTTGAGGGATGGCGCGCACGCATACAGAGGAATGGATATGTTGCCTGTC
GTAGGCGATGGTGCATCGATTCGCCTAGGCGAGAAACACGTCAAAGTAGA
TTTGAAGGGCTACGACTTGGAAGTTGTTGCCATCGTCCTCCAGCAGCACG
TGCATTTAGGTCTTGTCTTGGACAATGATAGAGTAACTTTCAGTTCCAAT
TTTCCCCCCGAACGCGTTCCTCCTATCCTCTTCCGAGAGGGTGTAACTGC
CTGCCTACGCCCAAGCACTGCCCGTCTCTTGATAGCCATGTGCCAACCAC
GCGTAGGAGACATGGTGGTTGATTTCATGGCGGGCGTCGGAACTATCCCA
TTTGTTGCTGCAGCGATACCACCACCCTTCCCTCAGGTCCTTGCCTTGGG
TGGGGACGAGAGCGAGGAGGCGGGGGGATATATGCGGGAGAATTTTAAAT
ATTTACGGGAACAGATGGGTGGACGCGCCGAGAGGACAGGGGAAGCTGGG
CAACGTGCGGCTGTCGTCGGACTTGTACGTTGGGATGCCCGGTGTCTGCC
TTTGAGACATGGGGTGGTAGACGTCGCGCTTGTGGATTTGCCGTTTGGAA
AGCGCCACAAGCATAAAGGAGGAAGGATGGTGCATTTATACGAACGGGCT
TTTCGTGAGATGGCTCGAGTGATCCGCCCGGGGGGGCGGTTGTTGTTGTT
GGCGTCGCGCGCATCATATGTGGAGGAGGCGTTGCAGAGCCGTATGTCTG
AGGGGTGCTGGTCCCAACAGGAGCAGCAGGATGAGAAAGAAGAGAAACTG
AAAGGAGATACCCCATTGTTTAACTCGAAGCGGGTAAATATTGGGGGTCT
GAGGGCTGTGTTGTATTTGGTAATACGTACTACGGCTCCCCTCCCAGTAA
TGCTGGAGAGACCGGAGAAGGAGGAGCGGAAAGCCGTGCGACGACGTGCT
TGGGATAACAGATCGACGAAGCAAGATGAGATCAGAGAACGAACGGGGAT
ATAAATGTAGCATAATGATAAAGGGAAGCACAAGAAATCTCAACGTGATA
ATTTAGTACTCATTTGTTTTTTGCGGGAC

protein sequence of jgi.p|Nanoce1779_2|627664

>mRNA_153-protein ID=mRNA_153-protein|Name=jgi.p|Nanoce1779_2|627664|organism=Nannochloropsis oceanica|type=polypeptide|length=531bp
MQEEVLAVKFNPFPLQQREAHTASPPLDTYLLLCVGGLEEDAVAAARAYF
HARQGSEEWVEKRDGRVGDAASSPWTAHFRVFEIDDEDRVGNAGCGKLIL
DTNVPMKVVLALPFLLGVLAYVGEDHFLSPEREAGLAHLRAVTHDASHWD
AAINLWARARDFYTRDTIRTDIPLGLTWTEKLKSTTEPLNVKFRASVLRD
GAHAYRGMDMLPVVGDGASIRLGEKHVKVDLKGYDLEVVAIVLQQHVHLG
LVLDNDRVTFSSNFPPERVPPILFREGVTACLRPSTARLLIAMCQPRVGD
MVVDFMAGVGTIPFVAAAIPPPFPQVLALGGDESEEAGGYMRENFKYLRE
QMGGRAERTGEAGQRAAVVGLVRWDARCLPLRHGVVDVALVDLPFGKRHK
HKGGRMVHLYERAFREMARVIRPGGRLLLLASRASYVEEALQSRMSEGCW
SQQEQQDEKEEKLKGDTPLFNSKRVNIGGLRAVLYLVIRTTAPLPVMLER
PEKEERKAVRRRAWDNRSTKQDEIRERTGI*

mRNA from alignment at scaffold_3:395836..397664+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_153 ID=mRNA_153|Name=jgi.p|Nanoce1779_2|627664|organism=Nannochloropsis oceanica|type=mRNA|length=1829bp|location=Sequence derived from alignment at scaffold_3:395836..397664+ (Nannochloropsis oceanica)
ACTTACACTTCACATGCCCACTCCCCTGTGATGCGATCTCTGCGTACGTT
CCCAACCTCGGGCCTCCCGACCTCATTCGTCCTTGCTGACAAAAGCTAAA
ACTACTCGATACACACACAAGAATCTAACACAAACAAGCTTTTTTCGTCG
TGGGCGTGAAGATGCAGGAGGAAGTGTTGGCGGTGAAATTCAATCCATTT
CCCCTGCAGCAGCGAGAGGCCCACACAGCCTCTCCTCCCCTCGACACCTA
TCTGCTCTTGTGCGTCGGCGGTCTGGAGGAGGATGCTGTGGCGGCAGCTC
GGGCCTATTTTCATGCCAGACAGGGCAGCGAGGAATGGGTAGAGAAGAGG
GATGGGAGGGTCGGAGACGCAGCGTCTTCTCCATGGACAGCACACTTCCG
CGTCTTTGAAATAGACGACGAGGACCGCGTTGGCAACGCAGGGTGTGGGA
AGCTTATCCTGGACACAAATGTGCCCATGAAAGTTGTCTTGGCATTACCG
TTCCTCCTAGGTGTTCTGGCATACGTGGGGGAAGATCACTTCCTGTCACC
AGAGCGGGAGGCGGGCTTAGCCCATTTGCGTGCCGTGACCCACGATGCCA
GCCATTGGGATGCAGCCATAAACCTGTGGGCCCGTGCACGCGACTTTTAT
ACTAGGGATACCATCCGTACTGACATCCCATTAGGCCTGACCTGGACCGA
AAAGCTCAAGTCTACGACCGAGCCTCTAAACGTGAAATTTCGCGCGTCCG
TCTTGAGGGATGGCGCGCACGCATACAGAGGAATGGATATGTTGCCTGTC
GTAGGCGATGGTGCATCGATTCGCCTAGGCGAGAAACACGTCAAAGTAGA
TTTGAAGGGCTACGACTTGGAAGTTGTTGCCATCGTCCTCCAGCAGCACG
TGCATTTAGGTCTTGTCTTGGACAATGATAGAGTAACTTTCAGTTCCAAT
TTTCCCCCCGAACGCGTTCCTCCTATCCTCTTCCGAGAGGGTGTAACTGC
CTGCCTACGCCCAAGCACTGCCCGTCTCTTGATAGCCATGTGCCAACCAC
GCGTAGGAGACATGGTGGTTGATTTCATGGCGGGCGTCGGAACTATCCCA
TTTGTTGCTGCAGCGATACCACCACCCTTCCCTCAGGTCCTTGCCTTGGG
TGGGGACGAGAGCGAGGAGGCGGGGGGATATATGCGGGAGAATTTTAAAT
ATTTACGGGAACAGATGGGTGGACGCGCCGAGAGGACAGGGGAAGCTGGG
CAACGTGCGGCTGTCGTCGGACTTGTACGTTGGGATGCCCGGTGTCTGCC
TTTGAGACATGGGGTGGTAGACGTCGCGCTTGTGGATTTGCCGTTTGGAA
AGCGCCACAAGCATAAAGGAGGAAGGATGGTGCATTTATACGAACGGGCT
TTTCGTGAGATGGCTCGAGTGATCCGCCCGGGGGGGCGGTTGTTGTTGTT
GGCGTCGCGCGCATCATATGTGGAGGAGGCGTTGCAGAGCCGTATGTCTG
AGGGGTGCTGGTCCCAACAGGAGCAGCAGGATGAGAAAGAAGAGAAACTG
AAAGGAGATACCCCATTGTTTAACTCGAAGCGGGTAAATATTGGGGGTCT
GAGGGCTGTGTTGTATTTGGTAATACGTACTACGGCTCCCCTCCCAGTAA
TGCTGGAGAGACCGGAGAAGGAGGAGCGGAAAGCCGTGCGACGACGTGCT
TGGGATAACAGATCGACGAAGCAAGATGAGATCAGAGAACGAACGGGGAT
ATAAATGTAGCATAATGATAAAGGGAAGCACAAGAAATCTCAACGTGATA
ATTTAGTACTCATTTGTTTTTTGCGGGAC

Coding sequence (CDS) from alignment at scaffold_3:395836..397664+

>mRNA_153 ID=mRNA_153|Name=jgi.p|Nanoce1779_2|627664|organism=Nannochloropsis oceanica|type=CDS|length=1593bp|location=Sequence derived from alignment at scaffold_3:395836..397664+ (Nannochloropsis oceanica)
ATGCAGGAGGAAGTGTTGGCGGTGAAATTCAATCCATTTCCCCTGCAGCA
GCGAGAGGCCCACACAGCCTCTCCTCCCCTCGACACCTATCTGCTCTTGT
GCGTCGGCGGTCTGGAGGAGGATGCTGTGGCGGCAGCTCGGGCCTATTTT
CATGCCAGACAGGGCAGCGAGGAATGGGTAGAGAAGAGGGATGGGAGGGT
CGGAGACGCAGCGTCTTCTCCATGGACAGCACACTTCCGCGTCTTTGAAA
TAGACGACGAGGACCGCGTTGGCAACGCAGGGTGTGGGAAGCTTATCCTG
GACACAAATGTGCCCATGAAAGTTGTCTTGGCATTACCGTTCCTCCTAGG
TGTTCTGGCATACGTGGGGGAAGATCACTTCCTGTCACCAGAGCGGGAGG
CGGGCTTAGCCCATTTGCGTGCCGTGACCCACGATGCCAGCCATTGGGAT
GCAGCCATAAACCTGTGGGCCCGTGCACGCGACTTTTATACTAGGGATAC
CATCCGTACTGACATCCCATTAGGCCTGACCTGGACCGAAAAGCTCAAGT
CTACGACCGAGCCTCTAAACGTGAAATTTCGCGCGTCCGTCTTGAGGGAT
GGCGCGCACGCATACAGAGGAATGGATATGTTGCCTGTCGTAGGCGATGG
TGCATCGATTCGCCTAGGCGAGAAACACGTCAAAGTAGATTTGAAGGGCT
ACGACTTGGAAGTTGTTGCCATCGTCCTCCAGCAGCACGTGCATTTAGGT
CTTGTCTTGGACAATGATAGAGTAACTTTCAGTTCCAATTTTCCCCCCGA
ACGCGTTCCTCCTATCCTCTTCCGAGAGGGTGTAACTGCCTGCCTACGCC
CAAGCACTGCCCGTCTCTTGATAGCCATGTGCCAACCACGCGTAGGAGAC
ATGGTGGTTGATTTCATGGCGGGCGTCGGAACTATCCCATTTGTTGCTGC
AGCGATACCACCACCCTTCCCTCAGGTCCTTGCCTTGGGTGGGGACGAGA
GCGAGGAGGCGGGGGGATATATGCGGGAGAATTTTAAATATTTACGGGAA
CAGATGGGTGGACGCGCCGAGAGGACAGGGGAAGCTGGGCAACGTGCGGC
TGTCGTCGGACTTGTACGTTGGGATGCCCGGTGTCTGCCTTTGAGACATG
GGGTGGTAGACGTCGCGCTTGTGGATTTGCCGTTTGGAAAGCGCCACAAG
CATAAAGGAGGAAGGATGGTGCATTTATACGAACGGGCTTTTCGTGAGAT
GGCTCGAGTGATCCGCCCGGGGGGGCGGTTGTTGTTGTTGGCGTCGCGCG
CATCATATGTGGAGGAGGCGTTGCAGAGCCGTATGTCTGAGGGGTGCTGG
TCCCAACAGGAGCAGCAGGATGAGAAAGAAGAGAAACTGAAAGGAGATAC
CCCATTGTTTAACTCGAAGCGGGTAAATATTGGGGGTCTGAGGGCTGTGT
TGTATTTGGTAATACGTACTACGGCTCCCCTCCCAGTAATGCTGGAGAGA
CCGGAGAAGGAGGAGCGGAAAGCCGTGCGACGACGTGCTTGGGATAACAG
ATCGACGAAGCAAGATGAGATCAGAGAACGAACGGGGATATAA

Synonyms

Publications