jgi.p|Nanoce1779_2|562287, mRNA_1529 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|562287
Unique NamemRNA_1529
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length357
Alignment locationscaffold_1:866653..867009 +

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Properties
Property NameValue
TranscriptId562373
TrackFilteredModels2
ProteinId562287
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:866653..867009 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|562287gene_1529Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|562287mRNA_1529-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1529CDS_1529Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1529 ID=mRNA_1529|Name=jgi.p|Nanoce1779_2|562287|organism=Nannochloropsis oceanica|type=mRNA|length=357bp
ATGCGGTTGCTCCGAGGTTCCTTTGATATCAACGCATTGGCAGCTACTGT
AGGTGTGACGATAGCGGTTATCACCTCTACCGCTGTGGCCGTCCATCATT
ACGATGAGAACATGTCGGCGCTCAAACTGAAAGCAGAGGTCGCTCAAGCG
AAAGCAGAAGTCGCGCGGATGCAGGACATGGCGACGAAGGAGGTAACTCA
AGCGAAAGCAGAGGTCGCGCGGATGCAGGACATGGCGACGACGGAGGTCG
CGCGGGTCAAGGGCGAGCGGGAGTTGGCAGAACAAATGTGGAAGAATGAG
GTGGAGCGCCACAAACGAGATGTACAACTTGCATATACACAAGATTACAC
GCCTTAG
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protein sequence of jgi.p|Nanoce1779_2|562287

>mRNA_1529-protein ID=mRNA_1529-protein|Name=jgi.p|Nanoce1779_2|562287|organism=Nannochloropsis oceanica|type=polypeptide|length=119bp
MRLLRGSFDINALAATVGVTIAVITSTAVAVHHYDENMSALKLKAEVAQA
KAEVARMQDMATKEVTQAKAEVARMQDMATTEVARVKGERELAEQMWKNE
VERHKRDVQLAYTQDYTP*
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mRNA from alignment at scaffold_1:866653..867009+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1529 ID=mRNA_1529|Name=jgi.p|Nanoce1779_2|562287|organism=Nannochloropsis oceanica|type=mRNA|length=357bp|location=Sequence derived from alignment at scaffold_1:866653..867009+ (Nannochloropsis oceanica)
ATGCGGTTGCTCCGAGGTTCCTTTGATATCAACGCATTGGCAGCTACTGT
AGGTGTGACGATAGCGGTTATCACCTCTACCGCTGTGGCCGTCCATCATT
ACGATGAGAACATGTCGGCGCTCAAACTGAAAGCAGAGGTCGCTCAAGCG
AAAGCAGAAGTCGCGCGGATGCAGGACATGGCGACGAAGGAGGTAACTCA
AGCGAAAGCAGAGGTCGCGCGGATGCAGGACATGGCGACGACGGAGGTCG
CGCGGGTCAAGGGCGAGCGGGAGTTGGCAGAACAAATGTGGAAGAATGAG
GTGGAGCGCCACAAACGAGATGTACAACTTGCATATACACAAGATTACAC
GCCTTAG
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Coding sequence (CDS) from alignment at scaffold_1:866653..867009+

>mRNA_1529 ID=mRNA_1529|Name=jgi.p|Nanoce1779_2|562287|organism=Nannochloropsis oceanica|type=CDS|length=357bp|location=Sequence derived from alignment at scaffold_1:866653..867009+ (Nannochloropsis oceanica)
ATGCGGTTGCTCCGAGGTTCCTTTGATATCAACGCATTGGCAGCTACTGT
AGGTGTGACGATAGCGGTTATCACCTCTACCGCTGTGGCCGTCCATCATT
ACGATGAGAACATGTCGGCGCTCAAACTGAAAGCAGAGGTCGCTCAAGCG
AAAGCAGAAGTCGCGCGGATGCAGGACATGGCGACGAAGGAGGTAACTCA
AGCGAAAGCAGAGGTCGCGCGGATGCAGGACATGGCGACGACGGAGGTCG
CGCGGGTCAAGGGCGAGCGGGAGTTGGCAGAACAAATGTGGAAGAATGAG
GTGGAGCGCCACAAACGAGATGTACAACTTGCATATACACAAGATTACAC
GCCTTAG
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Synonyms
Publications