jgi.p|Nanoce1779_2|572528, mRNA_1527 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|572528
Unique Name	mRNA_1527
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1538
Alignment location	scaffold_1:861604..863491 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	572614
Track	FilteredModels2
ProteinId	572528

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_1	supercontig	scaffold_1:861604..863491 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|572528	gene_1527	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|572528	mRNA_1527-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1527	CDS_1527	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_1:861604..863491+
coding sequence from alignment at scaffold_1:861604..863491+

mRNA sequence

>mRNA_1527 ID=mRNA_1527|Name=jgi.p|Nanoce1779_2|572528|organism=Nannochloropsis oceanica|type=mRNA|length=1538bp
CAGAGCCCGTCCCGCAAAAATGAATCAGGGCTCACGACGACCTGCTGGGG
GGGAAGAGGAGGAGACCGTCCTCCCGTTGACTCCCGGCCTGCGGCGGGCC
CCGAACCCTTACATGGCGCGCGCCTTAGCCACGTCCCCAGGCTTTAGCGG
GCGCAGACAGCAGCAGAAGGTTTTGACAGATTCGCTTGGCGGGCTCGCCA
TGTCTTCGGCCAATGGTCTTGACAACAGCAATCACAATTTTTCCCATGAT
GCTGAAATTGTCGCCTCTGCTGTGGTGGACTCGCCTCCCCCCTGGTTGCA
GAAGGACGACCGAGAAGTGCTGAGGTATTACGCGTACTCCCATGAGCCTG
TTTACGAAGGTGGGGATGTGAATGTGAAAGTGTTTCGGGTCCGATACTTC
ACCATCTACTATTTTACTTCTTCGGGGATGCTTTCTGTGAAAGAGCCCGC
ACAAGTGAACTCGGGCATCACACAAGGCACCTATTTGCGCAAGCAAAAGG
TGCCCAAGGCCACCTGTCAGCAGCAACTTGAGGGCAACGAGCGAAATCCT
CGCTTTTTCAACCCGTCGGACTTCGCTGTTGGTGCCACTGTGGCATTTTA
CGGTCGGCCCTTGGTCATAACAGATGCAGACACGTACACGCGCGAGTGGC
ATGCGCGGACATTGGGTCAGCCACTTGGAGCGCGGCTCGACAGTCCCGTC
GACGGACATCGTAATCAGCGGCTTTGCATGGAACAACCTTTGTTGGTGCG
TCGCCAAAAGCAGGAAGTGCGGCGGCAGCAAGAGCGAGAGCAGCAGGGGC
AAGATAATGCGGTCGCCATACCGAAAACAAGAAAGCTCCTACCTTACCCA
CGACGGGACACCACAGTATTGCGCTTTTTCTGTGCATTCGGAGATGAGCG
CTGTGTTGGGGGCCCTCACCGTTGTGTGCTCTACTATTACGTGGGCAACC
AAGAGATGGAGATCAAGGAGACAAAGGAGCAGGGTCGGTACCATTTTCCC
AACTTCTTAAACCGGCAACAGGTCTTGTCGGAATCCGGTCAAGTGTATCA
GGCAGAAGACTTGCGGTGCGGGGATTTTATAAAGGTGTACGGACGGCAAC
TCCTCTTGGTATTCTGCGATGCAAGTACTGTCGAGTGGTACGCAACCAGA
AGCATTTCGCAGGTGCCGTTGCCAATCACCTCAAGCGACTCTGCAGGCCC
TCCTTCCAACGCCACCACGAGGGTTTGACATATTGAGCACATTCTCTACT
CTCAAGGGCATTTTCCGAAGTTTTGCACAGACAATGCGCTGCATCCGATC
TGATTGTTAAAAGAATCCGCCCGGATCTGACGATTTCAGATGCTTCCCCG
TATTTTGCTGTTTCTTTTCCGCCAAAATCGACGAGTGATTTCCTCTATGC
CACCATGTGACATTTTTGATCCCTATGGGACTTTCAAACACTGTGTGGAG
GATAAAAATCAGCATTGTTAATTGCAATAAGTAATAAAAATGTTTTTCTT
TTGCCGCCCTTGCTTCCCTTTCAAAGCTCCCAAAGAAT

protein sequence of jgi.p|Nanoce1779_2|572528

>mRNA_1527-protein ID=mRNA_1527-protein|Name=jgi.p|Nanoce1779_2|572528|organism=Nannochloropsis oceanica|type=polypeptide|length=403bp
MNQGSRRPAGGEEEETVLPLTPGLRRAPNPYMARALATSPGFSGRRQQQK
VLTDSLGGLAMSSANGLDNSNHNFSHDAEIVASAVVDSPPPWLQKDDREV
LRYYAYSHEPVYEGGDVNVKVFRVRYFTIYYFTSSGMLSVKEPAQVNSGI
TQGTYLRKQKVPKATCQQQLEGNERNPRFFNPSDFAVGATVAFYGRPLVI
TDADTYTREWHARTLGQPLGARLDSPVDGHRNQRLCMEQPLLVRRQKQEV
RRQQEREQQGQDNAVAIPKTRKLLPYPRRDTTVLRFFCAFGDERCVGGPH
RCVLYYYVGNQEMEIKETKEQGRYHFPNFLNRQQVLSESGQVYQAEDLRC
GDFIKVYGRQLLLVFCDASTVEWYATRSISQVPLPITSSDSAGPPSNATT
RV*

mRNA from alignment at scaffold_1:861604..863491+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1527 ID=mRNA_1527|Name=jgi.p|Nanoce1779_2|572528|organism=Nannochloropsis oceanica|type=mRNA|length=1888bp|location=Sequence derived from alignment at scaffold_1:861604..863491+ (Nannochloropsis oceanica)
CAGAGCCCGTCCCGCAAAAATGAATCAGGGCTCACGACGACCTGCTGGGG
GGGAAGAGGAGGAGACCGTCCTCCCGTTGACTCCCGGCCTGCGGCGGGCC
CCGAACCCTTACATGGCGCGCGCCTTAGCCACGTCCCCAGGCTTTAGCGG
GCGCAGACAGCAGCAGAAGGTTTTGACAGATTCGCTTGTACGTGCCATCC
TCGACACCTTTTCTCTACTCTTGTTGGGATGAACCCGTCTTCTTCCTCAC
TATTCATTACCACCACCGGTTTTCCTCAAACACAGGGCGGGCTCGCCATG
TCTTCGGCCAATGGTCTTGACAACAGCAATCACAATTTTTCCCATGATGC
TGAAATTGTCGCCTCTGCTGTGGTGGACTCGCCTCCCCCCTGGTTGCAGA
AGGACGACCGAGAAGTGCTGAGGTATTACGCGTACTCCCATGAGCCTGTT
TACGAAGGTGGGGATGTGAATGTGAAAGTGTTTCGGGTCCGATACTTCAC
CATCTACTATTTTACTTCTTCGGGTATGTACGTTTTTGTTGCCATTGGTG
AAGTCGAACGGATACTTTATAGATGGCAAATGAAGATTGAAATAGAAATG
TGTTGGGCGGCCTTCGTGCACATTATCACAGTACCTGTTACTTGGATAAT
ATATACAGCTTGCATGCACGCCGGTTGCAAGCACGCACAAATGGACTGCC
TGATAGAGACTAACTTCACGCGCTTTATACATGCTCGCTCAAACATGAAT
TTCTAATCGCATCTCTGAACCTTAGGGATGCTTTCTGTGAAAGAGCCCGC
ACAAGTGAACTCGGGCATCACACAAGGCACCTATTTGCGCAAGCAAAAGG
TGCCCAAGGCCACCTGTCAGCAGCAACTTGAGGGCAACGAGCGAAATCCT
CGCTTTTTCAACCCGTCGGACTTCGCTGTTGGTGCCACTGTGGCATTTTA
CGGTCGGCCCTTGGTCATAACAGATGCAGACACGTACACGCGCGAGTGGC
ATGCGCGGACATTGGGTCAGCCACTTGGAGCGCGGCTCGACAGTCCCGTC
GACGGACATCGTAATCAGCGGCTTTGCATGGAACAACCTTTGTTGGTGCG
TCGCCAAAAGCAGGAAGTGCGGCGGCAGCAAGAGCGAGAGCAGCAGGGGC
AAGATAATGCGGTCGCCATACCGAAAACAAGAAAGCTCCTACCTTACCCA
CGACGGGACACCACAGTATTGCGCTTTTTCTGTGCATTCGGAGATGAGCG
CTGTGTTGGGGGCCCTCACCGTTGTGTGCTCTACTATTACGTGGGCAACC
AAGAGATGGAGATCAAGGAGACAAAGGAGCAGGGTCGGTACCATTTTCCC
AACTTCTTAAACCGGCAACAGGTCTTGTCGGAATCCGGTCAAGTGTATCA
GGCAGAAGACTTGCGGTGCGGGGATTTTATAAAGGTGTACGGACGGCAAC
TCCTCTTGGTATTCTGCGATGCAAGTACTGTCGAGTGGTACGCAACCAGA
AGCATTTCGCAGGTGCCGTTGCCAATCACCTCAAGCGACTCTGCAGGCCC
TCCTTCCAACGCCACCACGAGGGTTTGACATATTGAGCACATTCTCTACT
CTCAAGGGCATTTTCCGAAGTTTTGCACAGACAATGCGCTGCATCCGATC
TGATTGTTAAAAGAATCCGCCCGGATCTGACGATTTCAGATGCTTCCCCG
TATTTTGCTGTTTCTTTTCCGCCAAAATCGACGAGTGATTTCCTCTATGC
CACCATGTGACATTTTTGATCCCTATGGGACTTTCAAACACTGTGTGGAG
GATAAAAATCAGCATTGTTAATTGCAATAAGTAATAAAAATGTTTTTCTT
TTGCCGCCCTTGCTTCCCTTTCAAAGCTCCCAAAGAAT

Coding sequence (CDS) from alignment at scaffold_1:861604..863491+

>mRNA_1527 ID=mRNA_1527|Name=jgi.p|Nanoce1779_2|572528|organism=Nannochloropsis oceanica|type=CDS|length=3627bp|location=Sequence derived from alignment at scaffold_1:861604..863491+ (Nannochloropsis oceanica)
ATGAATCAGGGCTCACGACGACCTGCTGGGGGGGAAGAGGAGGAGACCGT
CCTCCCGTTGACTCCCGGCCTGCGGCGGGCCCCGAACCCTTACATGGCGC
GCGCCTTAGCCACGTCCCCAGGCTTTAGCGGGCGCAGACAGCAGCAGAAG
GTTTTGACAGATTCGCTTGGCGGGCTCGCCATGTCTTCGGCCAATGGTCT
TGACAACAGCAATCACAATTTTTCCCATGATGCTGAAATTGTCGCCTCTG
CTGTGGTGGACTCGCCTCCCCCCTGGTTGCAGAAGGACGACCGAGAAGTG
CTGAGGTATTACGCGTACTCCCATGAGCCTGTTTACGAAGGTGGGGATGT
GAATGTGAAAGTGTTTCGGGTCCGATACTTCACCATCTACTATTTTACTT
CTTCGGGGATGCTTTCTGTGAAAGAGCCCGCACAAGTGAACTCGGGCATC
ACACAAGGCACCTATTTGCGCAAGCAAAAGGTGCCCAAGGCCACCTGTCA
GCAGCAACTTGAGGGCAACGAGCGAAATCCTCGCTTTTTCAACCCGTCGG
ACTTCGCTGTTGGTGCCACTGTGGCATTTTACGGTCGGCCCTTGGTCATA
ACAGATGCAGACACGTACACGCGCGAGTGGCATGCGCGGACATTGGGTCA
GCCACTTGGAGCGCGGCTCGACAGTCCCGTCGACGGACATCGTAATCAGC
GGCTTTGCATGGAACAACCTTTGTTGGTGCGTCGCCAAAAGCAGGAAGTG
CGGCGGCAGCAAGAGCGAGAGCAGCAGGGGCAAGATAATGCGGTCGCCAT
ACCGAAAACAAGAAAGCTCCTACCTTACCCACGACGGGACACCACAGTAT
TGCGCTTTTTCTGTGCATTCGGAGATGAGCGCTGTGTTGGGGGCCCTCAC
CGTTGTGTGCTCTACTATTACGTGGGCAACCAAGAGATGGAGATCAAGGA
GACAAAGGAGCAGGGTCGGTACCATTTTCCCAACTTCTTAAACCGGCAAC
AGGTCTTGTCGGAATCCGGTCAAGTGTATCAGGCAGAAGACTTGCGGTGC
GGGGATTTTATAAAGGTGTACGGACGGCAACTCCTCTTGGTATTCTGCGA
TGCAAGTACTGTCGAGTGGTACGCAACCAGAAGCATTTCGCAGGTGCCGT
TGCCAATCACCTCAAGCGACTCTGCAGGCCCTCCTTCCAACGCCACCACG
AGGGTTTGAATGAATCAGGGCTCACGACGACCTGCTGGGGGGGAAGAGGA
GGAGACCGTCCTCCCGTTGACTCCCGGCCTGCGGCGGGCCCCGAACCCTT
ACATGGCGCGCGCCTTAGCCACGTCCCCAGGCTTTAGCGGGCGCAGACAG
CAGCAGAAGGTTTTGACAGATTCGCTTGGCGGGCTCGCCATGTCTTCGGC
CAATGGTCTTGACAACAGCAATCACAATTTTTCCCATGATGCTGAAATTG
TCGCCTCTGCTGTGGTGGACTCGCCTCCCCCCTGGTTGCAGAAGGACGAC
CGAGAAGTGCTGAGGTATTACGCGTACTCCCATGAGCCTGTTTACGAAGG
TGGGGATGTGAATGTGAAAGTGTTTCGGGTCCGATACTTCACCATCTACT
ATTTTACTTCTTCGGGGATGCTTTCTGTGAAAGAGCCCGCACAAGTGAAC
TCGGGCATCACACAAGGCACCTATTTGCGCAAGCAAAAGGTGCCCAAGGC
CACCTGTCAGCAGCAACTTGAGGGCAACGAGCGAAATCCTCGCTTTTTCA
ACCCGTCGGACTTCGCTGTTGGTGCCACTGTGGCATTTTACGGTCGGCCC
TTGGTCATAACAGATGCAGACACGTACACGCGCGAGTGGCATGCGCGGAC
ATTGGGTCAGCCACTTGGAGCGCGGCTCGACAGTCCCGTCGACGGACATC
GTAATCAGCGGCTTTGCATGGAACAACCTTTGTTGGTGCGTCGCCAAAAG
CAGGAAGTGCGGCGGCAGCAAGAGCGAGAGCAGCAGGGGCAAGATAATGC
GGTCGCCATACCGAAAACAAGAAAGCTCCTACCTTACCCACGACGGGACA
CCACAGTATTGCGCTTTTTCTGTGCATTCGGAGATGAGCGCTGTGTTGGG
GGCCCTCACCGTTGTGTGCTCTACTATTACGTGGGCAACCAAGAGATGGA
GATCAAGGAGACAAAGGAGCAGGGTCGGTACCATTTTCCCAACTTCTTAA
ACCGGCAACAGGTCTTGTCGGAATCCGGTCAAGTGTATCAGGCAGAAGAC
TTGCGGTGCGGGGATTTTATAAAGGTGTACGGACGGCAACTCCTCTTGGT
ATTCTGCGATGCAAGTACTGTCGAGTGGTACGCAACCAGAAGCATTTCGC
AGGTGCCGTTGCCAATCACCTCAAGCGACTCTGCAGGCCCTCCTTCCAAC
GCCACCACGAGGGTTTGAATGAATCAGGGCTCACGACGACCTGCTGGGGG
GGAAGAGGAGGAGACCGTCCTCCCGTTGACTCCCGGCCTGCGGCGGGCCC
CGAACCCTTACATGGCGCGCGCCTTAGCCACGTCCCCAGGCTTTAGCGGG
CGCAGACAGCAGCAGAAGGTTTTGACAGATTCGCTTGGCGGGCTCGCCAT
GTCTTCGGCCAATGGTCTTGACAACAGCAATCACAATTTTTCCCATGATG
CTGAAATTGTCGCCTCTGCTGTGGTGGACTCGCCTCCCCCCTGGTTGCAG
AAGGACGACCGAGAAGTGCTGAGGTATTACGCGTACTCCCATGAGCCTGT
TTACGAAGGTGGGGATGTGAATGTGAAAGTGTTTCGGGTCCGATACTTCA
CCATCTACTATTTTACTTCTTCGGGGATGCTTTCTGTGAAAGAGCCCGCA
CAAGTGAACTCGGGCATCACACAAGGCACCTATTTGCGCAAGCAAAAGGT
GCCCAAGGCCACCTGTCAGCAGCAACTTGAGGGCAACGAGCGAAATCCTC
GCTTTTTCAACCCGTCGGACTTCGCTGTTGGTGCCACTGTGGCATTTTAC
GGTCGGCCCTTGGTCATAACAGATGCAGACACGTACACGCGCGAGTGGCA
TGCGCGGACATTGGGTCAGCCACTTGGAGCGCGGCTCGACAGTCCCGTCG
ACGGACATCGTAATCAGCGGCTTTGCATGGAACAACCTTTGTTGGTGCGT
CGCCAAAAGCAGGAAGTGCGGCGGCAGCAAGAGCGAGAGCAGCAGGGGCA
AGATAATGCGGTCGCCATACCGAAAACAAGAAAGCTCCTACCTTACCCAC
GACGGGACACCACAGTATTGCGCTTTTTCTGTGCATTCGGAGATGAGCGC
TGTGTTGGGGGCCCTCACCGTTGTGTGCTCTACTATTACGTGGGCAACCA
AGAGATGGAGATCAAGGAGACAAAGGAGCAGGGTCGGTACCATTTTCCCA
ACTTCTTAAACCGGCAACAGGTCTTGTCGGAATCCGGTCAAGTGTATCAG
GCAGAAGACTTGCGGTGCGGGGATTTTATAAAGGTGTACGGACGGCAACT
CCTCTTGGTATTCTGCGATGCAAGTACTGTCGAGTGGTACGCAACCAGAA
GCATTTCGCAGGTGCCGTTGCCAATCACCTCAAGCGACTCTGCAGGCCCT
CCTTCCAACGCCACCACGAGGGTTTGA

Synonyms

Publications