jgi.p|Nanoce1779_2|9733, mRNA_1523 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|9733
Unique NamemRNA_1523
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length617
Alignment locationscaffold_1:847813..848509 +

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Properties
Property NameValue
TranscriptId9819
TrackFilteredModels2
ProteinId9733
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:847813..848509 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|9733gene_1523Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|9733mRNA_1523-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1523CDS_1523Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1523 ID=mRNA_1523|Name=jgi.p|Nanoce1779_2|9733|organism=Nannochloropsis oceanica|type=mRNA|length=617bp
ACAGCAAGCCACAATTTACAAGGAAGAGGAAGAAGAAGAAGAGCAAGGAG
GCTGCAGGCGAACAACACGACGAAAGAGGAAGATCACTTGTGTCACGACG
TTGTCGCAAGCGAGGGTGTGTGTTGATGATTGACCCGCCCAAACAAACAG
CCTTCAAACATGTTTACGGTGGTGACTGCGAGCATGGGATATTCGCAGCT
CTTCGACTTCGATGGGCGAGGAATTGTAATCCATGACACATGATGTGATT
GTCGTGTTACAAACATTTACAATGCTTGCTTATTCTTTCTTGTCATCCTC
GTCGCTTGCCGCCCTCTTTTCTAGCTGGTGCACAAGCCTACACGGCACTT
TCATTCACCACGTGCATTCTGGCTTGAGAAATTACCGTTTTGGCTTGTGT
CGTTCCGTCTGCTGCTGCTGTTGCTGTTACTACTGCTACTCCTGTGAAAG
TTGTATCTTGATCTCTTATCTACATACAAAAGAACACATTCACAAACTCT
CAAAGGTACACTTACACCTACATACACACACATTTTCAGAAGAAAACACG
GAAGAGTAGGGGGTCCACCCTACCACTCTCCAGCTCTTCCTCTTCTCGGT
AGTGTTGTTGTTGTCGT
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protein sequence of jgi.p|Nanoce1779_2|9733

>mRNA_1523-protein ID=mRNA_1523-protein|Name=jgi.p|Nanoce1779_2|9733|organism=Nannochloropsis oceanica|type=polypeptide|length=109bp
MTHDVIVVLQTFTMLAYSFLSSSSLAALFSSWCTSLHGTFIHHVHSGLRN
YRFGLCRSVCCCCCCYYCYSCESCILISYLHTKEHIHKLSKVHLHLHTHT
FSEENTEE*
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mRNA from alignment at scaffold_1:847813..848509+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1523 ID=mRNA_1523|Name=jgi.p|Nanoce1779_2|9733|organism=Nannochloropsis oceanica|type=mRNA|length=697bp|location=Sequence derived from alignment at scaffold_1:847813..848509+ (Nannochloropsis oceanica)
ACAGCAAGCCACAATTTACAAGGAAGGTATAGTATCATTCAAAATGAAGC
CCGCAGCATGCAAAAGTCCTTAATAAAACCCAAAAAACCTTTATAACCCA
CGGTAGAGGAAGAAGAAGAAGAGCAAGGAGGCTGCAGGCGAACAACACGA
CGAAAGAGGAAGATCACTTGTGTCACGACGTTGTCGCAAGCGAGGGTGTG
TGTTGATGATTGACCCGCCCAAACAAACAGCCTTCAAACATGTTTACGGT
GGTGACTGCGAGCATGGGATATTCGCAGCTCTTCGACTTCGATGGGCGAG
GAATTGTAATCCATGACACATGATGTGATTGTCGTGTTACAAACATTTAC
AATGCTTGCTTATTCTTTCTTGTCATCCTCGTCGCTTGCCGCCCTCTTTT
CTAGCTGGTGCACAAGCCTACACGGCACTTTCATTCACCACGTGCATTCT
GGCTTGAGAAATTACCGTTTTGGCTTGTGTCGTTCCGTCTGCTGCTGCTG
TTGCTGTTACTACTGCTACTCCTGTGAAAGTTGTATCTTGATCTCTTATC
TACATACAAAAGAACACATTCACAAACTCTCAAAGGTACACTTACACCTA
CATACACACACATTTTCAGAAGAAAACACGGAAGAGTAGGGGGTCCACCC
TACCACTCTCCAGCTCTTCCTCTTCTCGGTAGTGTTGTTGTTGTCGT
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Coding sequence (CDS) from alignment at scaffold_1:847813..848509+

>mRNA_1523 ID=mRNA_1523|Name=jgi.p|Nanoce1779_2|9733|organism=Nannochloropsis oceanica|type=CDS|length=327bp|location=Sequence derived from alignment at scaffold_1:847813..848509+ (Nannochloropsis oceanica)
ATGACACATGATGTGATTGTCGTGTTACAAACATTTACAATGCTTGCTTA
TTCTTTCTTGTCATCCTCGTCGCTTGCCGCCCTCTTTTCTAGCTGGTGCA
CAAGCCTACACGGCACTTTCATTCACCACGTGCATTCTGGCTTGAGAAAT
TACCGTTTTGGCTTGTGTCGTTCCGTCTGCTGCTGCTGTTGCTGTTACTA
CTGCTACTCCTGTGAAAGTTGTATCTTGATCTCTTATCTACATACAAAAG
AACACATTCACAAACTCTCAAAGGTACACTTACACCTACATACACACACA
TTTTCAGAAGAAAACACGGAAGAGTAG
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Synonyms
Publications