jgi.p|Nanoce1779_2|626844, mRNA_1521 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|626844
Unique Name	mRNA_1521
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2497
Alignment location	scaffold_1:841368..843968 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	626930
Track	FilteredModels2
ProteinId	626844

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_1	supercontig	scaffold_1:841368..843968 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|626844	gene_1521	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|626844	mRNA_1521-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1521	CDS_1521	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_1:841368..843968+
coding sequence from alignment at scaffold_1:841368..843968+

mRNA sequence

>mRNA_1521 ID=mRNA_1521|Name=jgi.p|Nanoce1779_2|626844|organism=Nannochloropsis oceanica|type=mRNA|length=2497bp
ATCTCTCCCACCATCTCTTCATCCTGCGGGTGCCGTGGTCAGGCGTAACA
AGGCACCCCCAAGGCGTGAATCGAAGGCACATACACTTACCGCGCGGCCG
TCCAGTGCATTTTGACTTTTAAAAGACGATTGTATCCACATTCACGCGCG
TGCAAAACCATGAGCCGCATCGGCGGTCACCAAGGCGAGGGTGGTGCAAG
CAGCGGTGAAGGTAGTTGCGGCCGCGGAGGTGGCCGAGTAACCATCACGA
CGGAGCCCCCCACGATTGATTCCTCTGTCCGCTTGGAGGACGGAGAACAA
GGAAACGACGACATGATTTCCTCGCCCTTGCCTCGAGGTTTGGCATCCCC
CACCAGCGCGGCCGAAGCTACAGCAGCAGAAGCAGTAGATGTGCTGTCTT
ATAACTCAAGCCTGTGTCGGAAACGAAGGCGGGCGGCAGGCCGCAATGAC
AAGACTCTGCTCGACGACGGTGGCGGGGGGGGGGGGGAGTGAGGACGGAG
CCAATGCCTCGTCTTCCTCCCCCTTGTCCTCCTCCTCTTACTTGTCCCGA
AGCCGCTCCCTACCCGTGTTGGTGGCGACACGACAGCACCACTATCACCA
TCAGCAGAAACAATTATTATTGCAGCCAACACCGACATACTTGCCGGCCA
CGGGGGAGTATGCGTCTGAGATGTTGCAATTAATGCGACGCTTGCGAGAC
AATGGAGCATTGTGCGATGTGATCGTGCGTGGAGATAAAGTGGAAGTAAA
GGCACATCGCTTAGTATTGGCGGCGGCGAGTGAGTATTTCCGGGCTTGTT
TGACGGGACCGATGCAGGAGAGCTCGGATAAAGTGATCGCGCTTTCGGGG
ATAGATGATGAGGCGTTGGGTGAGTTGATTAATTTCGCCTATTGTGGCCG
GGTGTCCCTGACGGAGGAGACAGTGTTGGAGCTGCTGGTGGCTGCCAACA
GGCTACAGATGCCGCAGGTGGTTACACAATGTTGTGATTTTCTGTTGCAG
CGGATGGACTGTGGGAACTGTTTGACGATTTTGGGGATCGCGAATACGTA
TCATTGTTCGCATATGCGGACGAAGGCCGAGGCTTACATCCACCGGCACT
TTGAATCGGTATATTTGGGCGAGGAATTTTTAGCCATGTCGCTTGAGCAA
CTTGTTCAGCTTTTGGCCAGTGACGCAGTGAGTGTATCGTCGGAAGAGAT
TATTTTTCGGGCGGCAGTCCGGTGGATGACCCATGCCTTTGAAACACGCC
GCGCCCACATCCTGCCCCTCCTCCGAACCGTCCGCCTGCAGCTCGTCCCT
ACCTCCTTTATTGCCGATGTCATCCACCAACATGACCTCGTCCAACAGTG
CCCGGAAGCTCAAAATCTCCTCCTGCAAGCGTATAGATGGCATAATTCTG
CCCGTTCAGACGCACGAAGGCAAGCGTTTCATTTTGTTCGACAACAGGCG
ATCCGTCGGGTGATTTATGCGATTGGCGGCGATGACGGACACGACGACCG
CAACCCCTACTGCACCGTCATGAGTTTGGACATGCAGATGGGGATGTGGC
GTAGCGTGGCACCGCTGCAGCAAAAGCGGTCGGTGTGTGGAGCGGCGGCG
TTGGGGGGTAAGATTTATGTGGTGGGGGGTTACAATGGCGAGAGAGCTGT
AGAGACTGTCGAGGAGTTCGATCCAAGCACAAATAGCTGGAGGAATGTCG
CTAGTCTGAGTCAGAGACGCTGTTCGTGTGGTTGTGCTGTGTTGGATGGG
CTGCTTTATGTGGTGGGAGGGGTATGTGGGCCACTGGCTTTGAGTGAGGT
GGAGAGGTATGACCCTGTGGTGGATGAATGGACAAGGATCTCCCCGATGC
AAGATGGCAGGTCGGGGTGTGGGGTGGCGGAGTTGGGAGGGCTGATATAC
GCTGTGGGGGGGATAAGTGGGAATGGGGAGACCGTTTGTACGGCGGAATG
TTTTGATCCCAAGACGCAACGGTGGCAGAGTGTGCAAAACATGCATGAGG
CGAGGAGGAGTTTTGGGTTGGCGGCGATAGGGGGCTTGTTGTACGCATGT
GGGGGGAATGATGGAGTGAATGATCTGAATTCGTTGGAGGTGTACAATCC
GAGAACAAATCGATGGAAGCCCTCAGGGCCGATGAGGTATGCAAGGATGT
ATTGCTCCGTGGCGGTTTTGGATGGGAAACTTTACGCCGTAGGAGGGCTA
GATGGCACGACCACCCTGGATGTGGTGGAGATGTATGACCCGGAAAGGGG
CGCGTGGTGCGAGGTGCTGCCCAGGCTGGATCGTTCTGTGTGTGGGTGTG
GGTTGGCTGTGATGGATTGTGTGGTGCGACCACTTATAGGGCAAGGGAAG
GAGGGGGAGGAGGCGAAGGGGGGAAGGAGGGTGAAGGAGGGGATTTCGGA
CAGGAGGAGAAGAGTGAGGGAGGAGGGGGGGGGGGGAGGAAGAGGCGGGG
GGGGGGAGGAGGAGAAGGATGAGGAAGGGGAGGGTGAAGGAGAATAA

protein sequence of jgi.p|Nanoce1779_2|626844

>mRNA_1521-protein ID=mRNA_1521-protein|Name=jgi.p|Nanoce1779_2|626844|organism=Nannochloropsis oceanica|type=polypeptide|length=703bp
MCCLITQACVGNEGGRQAAMTRLCSTTVAGGGGSEDGANASSSSPLSSSS
YLSRSRSLPVLVATRQHHYHHQQKQLLLQPTPTYLPATGEYASEMLQLMR
RLRDNGALCDVIVRGDKVEVKAHRLVLAAASEYFRACLTGPMQESSDKVI
ALSGIDDEALGELINFAYCGRVSLTEETVLELLVAANRLQMPQVVTQCCD
FLLQRMDCGNCLTILGIANTYHCSHMRTKAEAYIHRHFESVYLGEEFLAM
SLEQLVQLLASDAVSVSSEEIIFRAAVRWMTHAFETRRAHILPLLRTVRL
QLVPTSFIADVIHQHDLVQQCPEAQNLLLQAYRWHNSARSDARRQAFHFV
RQQAIRRVIYAIGGDDGHDDRNPYCTVMSLDMQMGMWRSVAPLQQKRSVC
GAAALGGKIYVVGGYNGERAVETVEEFDPSTNSWRNVASLSQRRCSCGCA
VLDGLLYVVGGVCGPLALSEVERYDPVVDEWTRISPMQDGRSGCGVAELG
GLIYAVGGISGNGETVCTAECFDPKTQRWQSVQNMHEARRSFGLAAIGGL
LYACGGNDGVNDLNSLEVYNPRTNRWKPSGPMRYARMYCSVAVLDGKLYA
VGGLDGTTTLDVVEMYDPERGAWCEVLPRLDRSVCGCGLAVMDCVVRPLI
GQGKEGEEAKGGRRVKEGISDRRRRVREEGGGGGRGGGGEEEKDEEGEGE
GE*

mRNA from alignment at scaffold_1:841368..843968+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1521 ID=mRNA_1521|Name=jgi.p|Nanoce1779_2|626844|organism=Nannochloropsis oceanica|type=mRNA|length=2601bp|location=Sequence derived from alignment at scaffold_1:841368..843968+ (Nannochloropsis oceanica)
ATCTCTCCCACCATCTCTTCATCCTGCGGGTGCCGTGGTCAGGCGTAACA
AGGCACCCCCAAGGCGTGAATCGAAGGCACATACACTTACCGCGCGGCCG
TCCAGTGCATTTTGACTTTTAAAAGACGATTGTATCCACATTCACGCGCG
TGCAAAACCATGAGCCGCATCGGCGGTCACCAAGGCGAGGGTGGTGCAAG
CAGCGGTGAAGGTAGTTGCGGCCGCGGAGGTGGCCGAGTAACCATCACGA
CGGAGCCCCCCACGATTGATGTGAGTCTTTTGATGCTGTCCCACCAAACA
TAATTGCACCTCTGCAACCCACTAATATGCGTCTTTCTCTTCCCTCTCTC
GCACAATTTTGAACGCACCTACAGTCCTCTGTCCGCTTGGAGGACGGAGA
ACAAGGAAACGACGACATGATTTCCTCGCCCTTGCCTCGAGGTTTGGCAT
CCCCCACCAGCGCGGCCGAAGCTACAGCAGCAGAAGCAGTAGATGTGCTG
TCTTATAACTCAAGCCTGTGTCGGAAACGAAGGCGGGCGGCAGGCCGCAA
TGACAAGACTCTGCTCGACGACGGTGGCGGGGGGGGGGGGGAGTGAGGAC
GGAGCCAATGCCTCGTCTTCCTCCCCCTTGTCCTCCTCCTCTTACTTGTC
CCGAAGCCGCTCCCTACCCGTGTTGGTGGCGACACGACAGCACCACTATC
ACCATCAGCAGAAACAATTATTATTGCAGCCAACACCGACATACTTGCCG
GCCACGGGGGAGTATGCGTCTGAGATGTTGCAATTAATGCGACGCTTGCG
AGACAATGGAGCATTGTGCGATGTGATCGTGCGTGGAGATAAAGTGGAAG
TAAAGGCACATCGCTTAGTATTGGCGGCGGCGAGTGAGTATTTCCGGGCT
TGTTTGACGGGACCGATGCAGGAGAGCTCGGATAAAGTGATCGCGCTTTC
GGGGATAGATGATGAGGCGTTGGGTGAGTTGATTAATTTCGCCTATTGTG
GCCGGGTGTCCCTGACGGAGGAGACAGTGTTGGAGCTGCTGGTGGCTGCC
AACAGGCTACAGATGCCGCAGGTGGTTACACAATGTTGTGATTTTCTGTT
GCAGCGGATGGACTGTGGGAACTGTTTGACGATTTTGGGGATCGCGAATA
CGTATCATTGTTCGCATATGCGGACGAAGGCCGAGGCTTACATCCACCGG
CACTTTGAATCGGTATATTTGGGCGAGGAATTTTTAGCCATGTCGCTTGA
GCAACTTGTTCAGCTTTTGGCCAGTGACGCAGTGAGTGTATCGTCGGAAG
AGATTATTTTTCGGGCGGCAGTCCGGTGGATGACCCATGCCTTTGAAACA
CGCCGCGCCCACATCCTGCCCCTCCTCCGAACCGTCCGCCTGCAGCTCGT
CCCTACCTCCTTTATTGCCGATGTCATCCACCAACATGACCTCGTCCAAC
AGTGCCCGGAAGCTCAAAATCTCCTCCTGCAAGCGTATAGATGGCATAAT
TCTGCCCGTTCAGACGCACGAAGGCAAGCGTTTCATTTTGTTCGACAACA
GGCGATCCGTCGGGTGATTTATGCGATTGGCGGCGATGACGGACACGACG
ACCGCAACCCCTACTGCACCGTCATGAGTTTGGACATGCAGATGGGGATG
TGGCGTAGCGTGGCACCGCTGCAGCAAAAGCGGTCGGTGTGTGGAGCGGC
GGCGTTGGGGGGTAAGATTTATGTGGTGGGGGGTTACAATGGCGAGAGAG
CTGTAGAGACTGTCGAGGAGTTCGATCCAAGCACAAATAGCTGGAGGAAT
GTCGCTAGTCTGAGTCAGAGACGCTGTTCGTGTGGTTGTGCTGTGTTGGA
TGGGCTGCTTTATGTGGTGGGAGGGGTATGTGGGCCACTGGCTTTGAGTG
AGGTGGAGAGGTATGACCCTGTGGTGGATGAATGGACAAGGATCTCCCCG
ATGCAAGATGGCAGGTCGGGGTGTGGGGTGGCGGAGTTGGGAGGGCTGAT
ATACGCTGTGGGGGGGATAAGTGGGAATGGGGAGACCGTTTGTACGGCGG
AATGTTTTGATCCCAAGACGCAACGGTGGCAGAGTGTGCAAAACATGCAT
GAGGCGAGGAGGAGTTTTGGGTTGGCGGCGATAGGGGGCTTGTTGTACGC
ATGTGGGGGGAATGATGGAGTGAATGATCTGAATTCGTTGGAGGTGTACA
ATCCGAGAACAAATCGATGGAAGCCCTCAGGGCCGATGAGGTATGCAAGG
ATGTATTGCTCCGTGGCGGTTTTGGATGGGAAACTTTACGCCGTAGGAGG
GCTAGATGGCACGACCACCCTGGATGTGGTGGAGATGTATGACCCGGAAA
GGGGCGCGTGGTGCGAGGTGCTGCCCAGGCTGGATCGTTCTGTGTGTGGG
TGTGGGTTGGCTGTGATGGATTGTGTGGTGCGACCACTTATAGGGCAAGG
GAAGGAGGGGGAGGAGGCGAAGGGGGGAAGGAGGGTGAAGGAGGGGATTT
CGGACAGGAGGAGAAGAGTGAGGGAGGAGGGGGGGGGGGGAGGAAGAGGC
GGGGGGGGGGAGGAGGAGAAGGATGAGGAAGGGGAGGGTGAAGGAGAATA
A

Coding sequence (CDS) from alignment at scaffold_1:841368..843968+

>mRNA_1521 ID=mRNA_1521|Name=jgi.p|Nanoce1779_2|626844|organism=Nannochloropsis oceanica|type=CDS|length=2109bp|location=Sequence derived from alignment at scaffold_1:841368..843968+ (Nannochloropsis oceanica)
ATGTGCTGTCTTATAACTCAAGCCTGTGTCGGAAACGAAGGCGGGCGGCA
GGCCGCAATGACAAGACTCTGCTCGACGACGGTGGCGGGGGGGGGGGGGA
GTGAGGACGGAGCCAATGCCTCGTCTTCCTCCCCCTTGTCCTCCTCCTCT
TACTTGTCCCGAAGCCGCTCCCTACCCGTGTTGGTGGCGACACGACAGCA
CCACTATCACCATCAGCAGAAACAATTATTATTGCAGCCAACACCGACAT
ACTTGCCGGCCACGGGGGAGTATGCGTCTGAGATGTTGCAATTAATGCGA
CGCTTGCGAGACAATGGAGCATTGTGCGATGTGATCGTGCGTGGAGATAA
AGTGGAAGTAAAGGCACATCGCTTAGTATTGGCGGCGGCGAGTGAGTATT
TCCGGGCTTGTTTGACGGGACCGATGCAGGAGAGCTCGGATAAAGTGATC
GCGCTTTCGGGGATAGATGATGAGGCGTTGGGTGAGTTGATTAATTTCGC
CTATTGTGGCCGGGTGTCCCTGACGGAGGAGACAGTGTTGGAGCTGCTGG
TGGCTGCCAACAGGCTACAGATGCCGCAGGTGGTTACACAATGTTGTGAT
TTTCTGTTGCAGCGGATGGACTGTGGGAACTGTTTGACGATTTTGGGGAT
CGCGAATACGTATCATTGTTCGCATATGCGGACGAAGGCCGAGGCTTACA
TCCACCGGCACTTTGAATCGGTATATTTGGGCGAGGAATTTTTAGCCATG
TCGCTTGAGCAACTTGTTCAGCTTTTGGCCAGTGACGCAGTGAGTGTATC
GTCGGAAGAGATTATTTTTCGGGCGGCAGTCCGGTGGATGACCCATGCCT
TTGAAACACGCCGCGCCCACATCCTGCCCCTCCTCCGAACCGTCCGCCTG
CAGCTCGTCCCTACCTCCTTTATTGCCGATGTCATCCACCAACATGACCT
CGTCCAACAGTGCCCGGAAGCTCAAAATCTCCTCCTGCAAGCGTATAGAT
GGCATAATTCTGCCCGTTCAGACGCACGAAGGCAAGCGTTTCATTTTGTT
CGACAACAGGCGATCCGTCGGGTGATTTATGCGATTGGCGGCGATGACGG
ACACGACGACCGCAACCCCTACTGCACCGTCATGAGTTTGGACATGCAGA
TGGGGATGTGGCGTAGCGTGGCACCGCTGCAGCAAAAGCGGTCGGTGTGT
GGAGCGGCGGCGTTGGGGGGTAAGATTTATGTGGTGGGGGGTTACAATGG
CGAGAGAGCTGTAGAGACTGTCGAGGAGTTCGATCCAAGCACAAATAGCT
GGAGGAATGTCGCTAGTCTGAGTCAGAGACGCTGTTCGTGTGGTTGTGCT
GTGTTGGATGGGCTGCTTTATGTGGTGGGAGGGGTATGTGGGCCACTGGC
TTTGAGTGAGGTGGAGAGGTATGACCCTGTGGTGGATGAATGGACAAGGA
TCTCCCCGATGCAAGATGGCAGGTCGGGGTGTGGGGTGGCGGAGTTGGGA
GGGCTGATATACGCTGTGGGGGGGATAAGTGGGAATGGGGAGACCGTTTG
TACGGCGGAATGTTTTGATCCCAAGACGCAACGGTGGCAGAGTGTGCAAA
ACATGCATGAGGCGAGGAGGAGTTTTGGGTTGGCGGCGATAGGGGGCTTG
TTGTACGCATGTGGGGGGAATGATGGAGTGAATGATCTGAATTCGTTGGA
GGTGTACAATCCGAGAACAAATCGATGGAAGCCCTCAGGGCCGATGAGGT
ATGCAAGGATGTATTGCTCCGTGGCGGTTTTGGATGGGAAACTTTACGCC
GTAGGAGGGCTAGATGGCACGACCACCCTGGATGTGGTGGAGATGTATGA
CCCGGAAAGGGGCGCGTGGTGCGAGGTGCTGCCCAGGCTGGATCGTTCTG
TGTGTGGGTGTGGGTTGGCTGTGATGGATTGTGTGGTGCGACCACTTATA
GGGCAAGGGAAGGAGGGGGAGGAGGCGAAGGGGGGAAGGAGGGTGAAGGA
GGGGATTTCGGACAGGAGGAGAAGAGTGAGGGAGGAGGGGGGGGGGGGAG
GAAGAGGCGGGGGGGGGGAGGAGGAGAAGGATGAGGAAGGGGAGGGTGAA
GGAGAATAA

Synonyms

Publications