jgi.p|Nanoce1779_2|576380, mRNA_152 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|576380
Unique Name	mRNA_152
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1585
Alignment location	scaffold_3:393737..395835 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	576466
Track	FilteredModels2
ProteinId	576380

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:393737..395835 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|576380	gene_152	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|576380	mRNA_152-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_152	CDS_152	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:393737..395835+
coding sequence from alignment at scaffold_3:393737..395835+

mRNA sequence

>mRNA_152 ID=mRNA_152|Name=jgi.p|Nanoce1779_2|576380|organism=Nannochloropsis oceanica|type=mRNA|length=1585bp
TGGAGACAACGGATTGCTTGTCATCGACCAGAGGGGGAGCGGACCCTTGT
GTGTCCAAATCCTCCCTTTTTCGGCAACATCACAGAGCAAGCCTTTTCCT
TTTTCACTACACTGGCTTTAGGGCTCTTTGGGGCAGTGCGTGACTTTTTG
ATGTGCCTTTCCTTCGATGCATGGCCATTTGCTCTTGCTGCCTCGGTCTT
GCTCAACCACCGCACAGACAGTGCAAGCGCCATCGGTGTCCTCGCTAGGG
CACAGAAAAGCTTACGACGGCTGTGACTGTGTGCACCCTTTCCCTTCGTG
CCCCTCCTGTTCCAGGCCCTCATCACCATCAGCTGCCTCTCCATTCTAAT
ATCCACTCCAACCACTCCCACTCTGACAGCTGCTCATTCCTCACTCACAA
TATAAGAAGAAGCGACAACAGTAACAGTACAAGTAAAAATAAATAGCAAG
GATGGCGGGTGGTAAGGACGAGACATATGACTACCTTTTTAAGGTGGTCC
TCATTGGCGACTCGGGCGTCGGAAAGTCCAACCTCCTGTCAAGGTTCACT
CGCAACGAATTCAACTTGGAGAGCAAGAGTACGATTGGCGTGGAGTTTGC
GACAAAGAGCATCAAGGCGGGTGATGGAAAAATCATCAAAGCGCAGATTT
GGGACACAGCAGGGCAGGAACGGTACCGGGCCATCACCAGTGCTTACTAT
CGCGGGGCTGTCGGGGCACTCCTCGTGTACGACATCTCCAAGCGCGTGAC
TTTTGACAACGTTGAGCGCTGGTTGAAAGAGCTGCGCGAGCACGCCGATC
AGTCGATTGTGGTGATGCTGGTGGGGAATAAGAGTGATCTGCGGCATTTG
CGCACCGTTCCGACGGAGGACGCCATGCGCTTCGCCGAGGAGCATCGGCT
GGCTTTCATTGAGACGTCGGCGTTGGATGCCTCGGGTGTGGATACTGCTT
TTCACCGGATTTTGACAGAGATTCACGCGTTATTGTCCAAGAAATCCATG
GCCGGAAATGAGGGAGGGTTTGGGCAAGCCATAGGGGAGGGTCAAAAGAT
TGCCTTGTCGAGCAACCCTCCCCAGAATAAGGCAGCGGCGAGTTTCCAAC
AATGCTGCAAGTCGCTTTAAGCGAGAGGTGAATCGGGAAGAAGCGGAGGA
AGTGGCTAGAGAGAGGGAGGAAGGCGAGGAAAGAAGAGGGCGATACAGGT
CGTCAGTATGTTACATTTAATTGAGACATGGAGTCCACGATCGGCTGCGC
CGCGGGAAAGCAAGCAAGACCGGCGGACTGCCAGGGCTGCAATTAGAAGG
GATAAAAGAGTGGAAAGAGGTTCTGATCTTCTGCCGTGTCCCTGTCTATG
AGTTCGTTCGGCTTGGCCATCTTTCCCCCCGTACTTTTTGGGTTTTCAAT
CTCTTCTCACCCCTCTCATAAAAAATGTCTGCCGTCCGCGAGAAATGAAT
AATGGGTTCCCCGTCCAAAAGCGTGGGGAGGCGCTGGAGCTGGTCAAGAG
GGTGAAAAGTAAAGAAGATATACAAGTTAACATATACATAATATGCTTTA
TGAGACTTTGGATTGCGCTTTGTCGAACCGGCATC

protein sequence of jgi.p|Nanoce1779_2|576380

>mRNA_152-protein ID=mRNA_152-protein|Name=jgi.p|Nanoce1779_2|576380|organism=Nannochloropsis oceanica|type=polypeptide|length=223bp
MAGGKDETYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFA
TKSIKAGDGKIIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISKRVT
FDNVERWLKELREHADQSIVVMLVGNKSDLRHLRTVPTEDAMRFAEEHRL
AFIETSALDASGVDTAFHRILTEIHALLSKKSMAGNEGGFGQAIGEGQKI
ALSSNPPQNKAAASFQQCCKSL*

mRNA from alignment at scaffold_3:393737..395835+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_152 ID=mRNA_152|Name=jgi.p|Nanoce1779_2|576380|organism=Nannochloropsis oceanica|type=mRNA|length=2099bp|location=Sequence derived from alignment at scaffold_3:393737..395835+ (Nannochloropsis oceanica)
TGGAGACAACGGATTGCTTGTCATCGACCAGAGGGGGAGCGGACCCTTGT
GTGTCCAAATCCTCCCTTTTTCGGCAACATCACAGAGCAAGCCTTTTCCT
TTTTCACTACACTGGCTTTAGGGCTCTTTGGGGCAGTGCGTGACTTTTTG
ATGTGCCTTTCCTTCGATGCATGGCCATTTGCTCTTGCTGCCTCGGTCTT
GCTCAACCACCGCACAGACAGTGCAAGCGCCATCGGTGTCCTCGCTAGGG
CACAGAAAAGCTTACGACGGCTGTGACTGTGTGCACCCTTTCCCTTCGTG
CCCCTCCTGTTCCAGGCCCTCATCACCATCAGCTGCCTCTCCATTCTAAT
ATCCACTCCAACCACTCCCACTCTGACAGCTGCTCATTCCTCACTCACAA
TATAAGAAGAAGCGACAACAGTAACAGTACAAGTAAAAATAAATAGCAAG
GATGGCGGGTGGTAAGGACGAGACATATGACTACCTTTTTAAGGGTACGT
TGGCGGGGCACGCGCGTGAGGAAGGGAAGAGGAGAGTAAGGAAAAGGAGC
CTGGCGCCAGCATTCTCGTTCCACAGCCAGCCCTTTGTGTCATCAAATCG
TATTCAGAGTGCTTGAACATTCTATCAATATATCCCCCCGTCCCTTTCCT
CTTCATCGGCCCCGCAGTGGTCCTCATTGGCGACTCGGGCGTCGGAAAGT
CCAACCTCCTGTCAAGGTTCACTCGCAACGAATTCAACTTGGAGAGCAAG
AGTACGATTGGCGTGGAGTTTGCGACAAAGAGCATCAAGGCGGGTGATGG
AAAAATCATCAAAGCGCAGATTTGGGACACAGCAGGGCAGGTATGTCGTT
CAAAAGAGAAAGAGAGAGAGAGAGAAAGAGAGAGAGAGAAAGAGAGAGAA
AGAGAGAAAAGAGAGAGAGTGTGTGTGTGTGCGTGTGTGTGTGTCTGTGT
GTGTGTACATCCCGGGAGCATCAGAATCGCTCCTTCTATTCGACGCATGT
CTCCCACAGTATTTGACATGCATTTAATTTCATTCTCTCTTATCATCACT
GGCCAGCATTTATCTCACGAACCTCCTTCTCACGAACCACCTTCTCACGA
ACCACCTTCTCACGAACCTCCTCCTCACGAGCCTCCTTCTCACGAATCTC
CTTCTCTCCCCTCCTGCCGCCTCTTCTATAGGAACGGTACCGGGCCATCA
CCAGTGCTTACTATCGCGGGGCTGTCGGGGCACTCCTCGTGTACGACATC
TCCAAGCGCGTGACTTTTGACAACGTTGAGCGCTGGTTGAAAGAGCTGCG
CGAGCACGCCGATCAGTCGATTGTGGTGATGCTGGTGGGGAATAAGAGTG
ATCTGCGGCATTTGCGCACCGTTCCGACGGAGGACGCCATGCGCTTCGCC
GAGGAGCATCGGCTGGCTTTCATTGAGACGTCGGCGTTGGATGCCTCGGG
TGTGGATACTGCTTTTCACCGGATTTTGACAGAGATTCACGCGTTATTGT
CCAAGAAATCCATGGCCGGAAATGAGGGAGGGTTTGGGCAAGCCATAGGG
GAGGGTCAAAAGATTGCCTTGTCGAGCAACCCTCCCCAGAATAAGGCAGC
GGCGAGTTTCCAACAATGCTGCAAGTCGCTTTAAGCGAGAGGTGAATCGG
GAAGAAGCGGAGGAAGTGGCTAGAGAGAGGGAGGAAGGCGAGGAAAGAAG
AGGGCGATACAGGTCGTCAGTATGTTACATTTAATTGAGACATGGAGTCC
ACGATCGGCTGCGCCGCGGGAAAGCAAGCAAGACCGGCGGACTGCCAGGG
CTGCAATTAGAAGGGATAAAAGAGTGGAAAGAGGTTCTGATCTTCTGCCG
TGTCCCTGTCTATGAGTTCGTTCGGCTTGGCCATCTTTCCCCCCGTACTT
TTTGGGTTTTCAATCTCTTCTCACCCCTCTCATAAAAAATGTCTGCCGTC
CGCGAGAAATGAATAATGGGTTCCCCGTCCAAAAGCGTGGGGAGGCGCTG
GAGCTGGTCAAGAGGGTGAAAAGTAAAGAAGATATACAAGTTAACATATA
CATAATATGCTTTATGAGACTTTGGATTGCGCTTTGTCGAACCGGCATC

Coding sequence (CDS) from alignment at scaffold_3:393737..395835+

>mRNA_152 ID=mRNA_152|Name=jgi.p|Nanoce1779_2|576380|organism=Nannochloropsis oceanica|type=CDS|length=2007bp|location=Sequence derived from alignment at scaffold_3:393737..395835+ (Nannochloropsis oceanica)
ATGGCGGGTGGTAAGGACGAGACATATGACTACCTTTTTAAGGTGGTCCT
CATTGGCGACTCGGGCGTCGGAAAGTCCAACCTCCTGTCAAGGTTCACTC
GCAACGAATTCAACTTGGAGAGCAAGAGTACGATTGGCGTGGAGTTTGCG
ACAAAGAGCATCAAGGCGGGTGATGGAAAAATCATCAAAGCGCAGATTTG
GGACACAGCAGGGCAGGAACGGTACCGGGCCATCACCAGTGCTTACTATC
GCGGGGCTGTCGGGGCACTCCTCGTGTACGACATCTCCAAGCGCGTGACT
TTTGACAACGTTGAGCGCTGGTTGAAAGAGCTGCGCGAGCACGCCGATCA
GTCGATTGTGGTGATGCTGGTGGGGAATAAGAGTGATCTGCGGCATTTGC
GCACCGTTCCGACGGAGGACGCCATGCGCTTCGCCGAGGAGCATCGGCTG
GCTTTCATTGAGACGTCGGCGTTGGATGCCTCGGGTGTGGATACTGCTTT
TCACCGGATTTTGACAGAGATTCACGCGTTATTGTCCAAGAAATCCATGG
CCGGAAATGAGGGAGGGTTTGGGCAAGCCATAGGGGAGGGTCAAAAGATT
GCCTTGTCGAGCAACCCTCCCCAGAATAAGGCAGCGGCGAGTTTCCAACA
ATGCTGCAAGTCGCTTTAAATGGCGGGTGGTAAGGACGAGACATATGACT
ACCTTTTTAAGGTGGTCCTCATTGGCGACTCGGGCGTCGGAAAGTCCAAC
CTCCTGTCAAGGTTCACTCGCAACGAATTCAACTTGGAGAGCAAGAGTAC
GATTGGCGTGGAGTTTGCGACAAAGAGCATCAAGGCGGGTGATGGAAAAA
TCATCAAAGCGCAGATTTGGGACACAGCAGGGCAGGAACGGTACCGGGCC
ATCACCAGTGCTTACTATCGCGGGGCTGTCGGGGCACTCCTCGTGTACGA
CATCTCCAAGCGCGTGACTTTTGACAACGTTGAGCGCTGGTTGAAAGAGC
TGCGCGAGCACGCCGATCAGTCGATTGTGGTGATGCTGGTGGGGAATAAG
AGTGATCTGCGGCATTTGCGCACCGTTCCGACGGAGGACGCCATGCGCTT
CGCCGAGGAGCATCGGCTGGCTTTCATTGAGACGTCGGCGTTGGATGCCT
CGGGTGTGGATACTGCTTTTCACCGGATTTTGACAGAGATTCACGCGTTA
TTGTCCAAGAAATCCATGGCCGGAAATGAGGGAGGGTTTGGGCAAGCCAT
AGGGGAGGGTCAAAAGATTGCCTTGTCGAGCAACCCTCCCCAGAATAAGG
CAGCGGCGAGTTTCCAACAATGCTGCAAGTCGCTTTAAATGGCGGGTGGT
AAGGACGAGACATATGACTACCTTTTTAAGGTGGTCCTCATTGGCGACTC
GGGCGTCGGAAAGTCCAACCTCCTGTCAAGGTTCACTCGCAACGAATTCA
ACTTGGAGAGCAAGAGTACGATTGGCGTGGAGTTTGCGACAAAGAGCATC
AAGGCGGGTGATGGAAAAATCATCAAAGCGCAGATTTGGGACACAGCAGG
GCAGGAACGGTACCGGGCCATCACCAGTGCTTACTATCGCGGGGCTGTCG
GGGCACTCCTCGTGTACGACATCTCCAAGCGCGTGACTTTTGACAACGTT
GAGCGCTGGTTGAAAGAGCTGCGCGAGCACGCCGATCAGTCGATTGTGGT
GATGCTGGTGGGGAATAAGAGTGATCTGCGGCATTTGCGCACCGTTCCGA
CGGAGGACGCCATGCGCTTCGCCGAGGAGCATCGGCTGGCTTTCATTGAG
ACGTCGGCGTTGGATGCCTCGGGTGTGGATACTGCTTTTCACCGGATTTT
GACAGAGATTCACGCGTTATTGTCCAAGAAATCCATGGCCGGAAATGAGG
GAGGGTTTGGGCAAGCCATAGGGGAGGGTCAAAAGATTGCCTTGTCGAGC
AACCCTCCCCAGAATAAGGCAGCGGCGAGTTTCCAACAATGCTGCAAGTC
GCTTTAA

Synonyms

Publications