jgi.p|Nanoce1779_2|572497, mRNA_1518 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|572497
Unique Name	mRNA_1518
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1309
Alignment location	scaffold_1:828753..830614 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	572583
Track	FilteredModels2
ProteinId	572497

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_1	supercontig	scaffold_1:828753..830614 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|572497	gene_1518	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|572497	mRNA_1518-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1518	CDS_1518	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_1:828753..830614+
coding sequence from alignment at scaffold_1:828753..830614+

mRNA sequence

>mRNA_1518 ID=mRNA_1518|Name=jgi.p|Nanoce1779_2|572497|organism=Nannochloropsis oceanica|type=mRNA|length=1309bp
AATAGCTGTTTCCAAGATCACCAGGTTGGATCTGTGGAACTGAACAACCA
GCGAGTCGAAAGCAGGAGCCCGAGCGACAAGCACCACACCGACTGCCAGT
CAAGCAATGTATTCCGGTCCCGCAACGGGCACTGGAACTACGGTGTACCT
AAATGTCTACGACCTCCACACAGCAAACCGATATGCCCACACTTTCGGGG
TTGGCGTCTATCATACTGGCGTGGAGATAGCCGGGAACGAATACACTTAT
GCAGGTGGCGCTGGTATATTTGCGATGTCCCCAAAGGTGGCGCCAGGTGC
GGTTTTCCGTGAGTCTATACGCCTGGGAAACCTGGTTGACGCACCTGGAG
CTTTGCGGCGGGCGCTGGACATTCTGAGACCAGACTTCGGGCCAGACGAT
TACAGCTTAGTCAAGAACAATTGTAACCATTTTGCCAACGCCCTCGTCAT
GGAGCTTTTGGGCAAGCCCATTCCCAGCTACCTCAATCGTCTGGCCTCTT
TTGGTTCATTTTTCTCCTGCTTCCTTCCCGCGGATATGACGAGCCAAGCG
CCCGTGAATCAAGAAGGAGGTGGTGGAGGAGGTGCTGCTTACCCCTCTGT
GCAACGGTATGTCGGGGCGCCAACACCGACTTATACGGCTTTTGGTGGTG
AGGGCATGAGGATGAGTCAAGGTCCAGTCAAATCAGCGAGGAATGAGAGC
GAGATTGAAAAGAGGGAGATGATTCGGCAGGCGACGCTTGCGAGGATGGA
AGGAGGAGGAGGTAGAGTAGGAGATGGAGGAAGAGGGACAGGTGCGGGGA
CGGCGTCTTTATCGTAGTGGGATTTTTGTTATTGAAGAATCACAATATAT
TTACACAGCAGTGAAACAGAGTGGTAAATGATTGAGAACGATCACAAGTA
TGGGGGGGGAAGTACTTGAGCGGGAAATGAGTGTCAAAAAGTCACATTAT
TGGAAAACTCAAACCCACGGAGAACGCTCCGATGCGATGAATTTTGATGT
GCGGACGTTGGAAGGCTCCAAAATCACAATCGTCACTTTCCTCAGTGAGT
TGGCCACTGGTGGATGGACGCCTGCACCACGCACATAACCTATCACCAGC
ACCACTATGCACCACGCACATAACCTATCACATCGTAACGTCCCGAGCCG
GATGGAGAGAGCTTTGGGTGGAGTTTCCGTGTGTCACGTGCCGTGCCTTA
CACACCCCATCACTACGTCACTCGATCAATCGGTAAGCATCCAGCCATTA
ACGCCGGCAGCGAGCGAGTGGATGGGCAGCAAGAGAACAAATACCCATTT
TTCACTGGA

protein sequence of jgi.p|Nanoce1779_2|572497

>mRNA_1518-protein ID=mRNA_1518-protein|Name=jgi.p|Nanoce1779_2|572497|organism=Nannochloropsis oceanica|type=polypeptide|length=237bp
MYSGPATGTGTTVYLNVYDLHTANRYAHTFGVGVYHTGVEIAGNEYTYAG
GAGIFAMSPKVAPGAVFRESIRLGNLVDAPGALRRALDILRPDFGPDDYS
LVKNNCNHFANALVMELLGKPIPSYLNRLASFGSFFSCFLPADMTSQAPV
NQEGGGGGGAAYPSVQRYVGAPTPTYTAFGGEGMRMSQGPVKSARNESEI
EKREMIRQATLARMEGGGGRVGDGGRGTGAGTASLS*

mRNA from alignment at scaffold_1:828753..830614+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1518 ID=mRNA_1518|Name=jgi.p|Nanoce1779_2|572497|organism=Nannochloropsis oceanica|type=mRNA|length=1862bp|location=Sequence derived from alignment at scaffold_1:828753..830614+ (Nannochloropsis oceanica)
AATAGCTGTTTCCAAGATCACCAGGTTGGATCTGTGGAACTGAACAACCA
GCGAGTCGAAAGCAGGAGCCCGAGCGACAAGCACCACACCGACTGCCAGT
CAAGCAATGTATTCCGGTCCCGCAACGGGCACTGGAACTACGGTGTACCT
AAATGTCTACGACCTCCACACAGCAAACCGATATGCCCACACTTTCGGGG
TTGGCGTCTATCATACTGGTACGTAGGGGGTAGCTGGGCGCAGGGAGATG
GGCGTGGGGAGGGGTGCCCTGGATTTATGCCTTGGAGCATATTGATGTGC
GTCCTTGCCGGCTTGATCCCGGCCTAAAGGGGCCTGCTAGCTAAGGATCA
TGGCATCTTCTCTTAGCTCTCTGCGTTTTGGCTGACCTGTGTCGTAGCTG
TCCTCCCGTGCTCGTCCATCTGTTGACCCCATCCCCCCCATCCTTCCGTT
TTTCCTGCCCCCTACCTTGTTTTCCAACTCAGGCGTGGAGATAGCCGGGA
ACGAATACACTTATGCAGGTGGCGCTGGTATATTTGCGATGTCCCCAAAG
GTGGCGCCAGGTGCGGTTTTCCGTGAGTCTATACGCCTGGGAAACCTGGT
TGACGCACCTGGAGCTTTGCGGCGGGCGCTGGACATTCTGAGACCAGACT
TCGGGCCAGACGATTACAGCTTAGTCAAGAACAATTGTAACCATTTTGTA
CGTATTCCCCTCTTCTATTTCGGGGTCCAGTAGGATCATGTGTAGCGTGC
TGCGGGAGATTTGCATCACTCAGTGCACTTGCAAATCCGCCCCCCCTCCC
TCCAACAGGCCAACGCCCTCGTCATGGAGCTTTTGGGCAAGCCCATTCCC
AGCTACCTCAATCGTCTGGCCTCTTTTGGTTCATTTTTCTCCTGCTTCCT
TCCCGCGGATATGACGAGCCAAGCGCCCGTGAATCAAGGTGCGTATCGTC
TCTCTCCCTATCTCTCTCCCACACACACACCTCTTTTTTTCACTCTCTTT
GGAGGAGCTGGTCTCCGTCTTCATATTTTCCTTGGAGGCGATGAATTCCC
CTCCACTCCTTACTGGTCTTCCCCTCCGCTTCTTTCTGATCCCCAACTAC
ACACACCAACACACAGAAGGAGGTGGTGGAGGAGGTGCTGCTTACCCCTC
TGTGCAACGGTATGTCGGGGCGCCAACACCGACTTATACGGCTTTTGGTG
GTGAGGGCATGAGGATGAGTCAAGGTCCAGTCAAATCAGCGAGGAATGAG
AGCGAGATTGAAAAGAGGGAGATGATTCGGCAGGCGACGCTTGCGAGGAT
GGAAGGAGGAGGAGGTAGAGTAGGAGATGGAGGAAGAGGGACAGGTGCGG
GGACGGCGTCTTTATCGTAGTGGGATTTTTGTTATTGAAGAATCACAATA
TATTTACACAGCAGTGAAACAGAGTGGTAAATGATTGAGAACGATCACAA
GTATGGGGGGGGAAGTACTTGAGCGGGAAATGAGTGTCAAAAAGTCACAT
TATTGGAAAACTCAAACCCACGGAGAACGCTCCGATGCGATGAATTTTGA
TGTGCGGACGTTGGAAGGCTCCAAAATCACAATCGTCACTTTCCTCAGTG
AGTTGGCCACTGGTGGATGGACGCCTGCACCACGCACATAACCTATCACC
AGCACCACTATGCACCACGCACATAACCTATCACATCGTAACGTCCCGAG
CCGGATGGAGAGAGCTTTGGGTGGAGTTTCCGTGTGTCACGTGCCGTGCC
TTACACACCCCATCACTACGTCACTCGATCAATCGGTAAGCATCCAGCCA
TTAACGCCGGCAGCGAGCGAGTGGATGGGCAGCAAGAGAACAAATACCCA
TTTTTCACTGGA

Coding sequence (CDS) from alignment at scaffold_1:828753..830614+

>mRNA_1518 ID=mRNA_1518|Name=jgi.p|Nanoce1779_2|572497|organism=Nannochloropsis oceanica|type=CDS|length=2844bp|location=Sequence derived from alignment at scaffold_1:828753..830614+ (Nannochloropsis oceanica)
ATGTATTCCGGTCCCGCAACGGGCACTGGAACTACGGTGTACCTAAATGT
CTACGACCTCCACACAGCAAACCGATATGCCCACACTTTCGGGGTTGGCG
TCTATCATACTGGCGTGGAGATAGCCGGGAACGAATACACTTATGCAGGT
GGCGCTGGTATATTTGCGATGTCCCCAAAGGTGGCGCCAGGTGCGGTTTT
CCGTGAGTCTATACGCCTGGGAAACCTGGTTGACGCACCTGGAGCTTTGC
GGCGGGCGCTGGACATTCTGAGACCAGACTTCGGGCCAGACGATTACAGC
TTAGTCAAGAACAATTGTAACCATTTTGCCAACGCCCTCGTCATGGAGCT
TTTGGGCAAGCCCATTCCCAGCTACCTCAATCGTCTGGCCTCTTTTGGTT
CATTTTTCTCCTGCTTCCTTCCCGCGGATATGACGAGCCAAGCGCCCGTG
AATCAAGAAGGAGGTGGTGGAGGAGGTGCTGCTTACCCCTCTGTGCAACG
GTATGTCGGGGCGCCAACACCGACTTATACGGCTTTTGGTGGTGAGGGCA
TGAGGATGAGTCAAGGTCCAGTCAAATCAGCGAGGAATGAGAGCGAGATT
GAAAAGAGGGAGATGATTCGGCAGGCGACGCTTGCGAGGATGGAAGGAGG
AGGAGGTAGAGTAGGAGATGGAGGAAGAGGGACAGGTGCGGGGACGGCGT
CTTTATCGTAGATGTATTCCGGTCCCGCAACGGGCACTGGAACTACGGTG
TACCTAAATGTCTACGACCTCCACACAGCAAACCGATATGCCCACACTTT
CGGGGTTGGCGTCTATCATACTGGCGTGGAGATAGCCGGGAACGAATACA
CTTATGCAGGTGGCGCTGGTATATTTGCGATGTCCCCAAAGGTGGCGCCA
GGTGCGGTTTTCCGTGAGTCTATACGCCTGGGAAACCTGGTTGACGCACC
TGGAGCTTTGCGGCGGGCGCTGGACATTCTGAGACCAGACTTCGGGCCAG
ACGATTACAGCTTAGTCAAGAACAATTGTAACCATTTTGCCAACGCCCTC
GTCATGGAGCTTTTGGGCAAGCCCATTCCCAGCTACCTCAATCGTCTGGC
CTCTTTTGGTTCATTTTTCTCCTGCTTCCTTCCCGCGGATATGACGAGCC
AAGCGCCCGTGAATCAAGAAGGAGGTGGTGGAGGAGGTGCTGCTTACCCC
TCTGTGCAACGGTATGTCGGGGCGCCAACACCGACTTATACGGCTTTTGG
TGGTGAGGGCATGAGGATGAGTCAAGGTCCAGTCAAATCAGCGAGGAATG
AGAGCGAGATTGAAAAGAGGGAGATGATTCGGCAGGCGACGCTTGCGAGG
ATGGAAGGAGGAGGAGGTAGAGTAGGAGATGGAGGAAGAGGGACAGGTGC
GGGGACGGCGTCTTTATCGTAGATGTATTCCGGTCCCGCAACGGGCACTG
GAACTACGGTGTACCTAAATGTCTACGACCTCCACACAGCAAACCGATAT
GCCCACACTTTCGGGGTTGGCGTCTATCATACTGGCGTGGAGATAGCCGG
GAACGAATACACTTATGCAGGTGGCGCTGGTATATTTGCGATGTCCCCAA
AGGTGGCGCCAGGTGCGGTTTTCCGTGAGTCTATACGCCTGGGAAACCTG
GTTGACGCACCTGGAGCTTTGCGGCGGGCGCTGGACATTCTGAGACCAGA
CTTCGGGCCAGACGATTACAGCTTAGTCAAGAACAATTGTAACCATTTTG
CCAACGCCCTCGTCATGGAGCTTTTGGGCAAGCCCATTCCCAGCTACCTC
AATCGTCTGGCCTCTTTTGGTTCATTTTTCTCCTGCTTCCTTCCCGCGGA
TATGACGAGCCAAGCGCCCGTGAATCAAGAAGGAGGTGGTGGAGGAGGTG
CTGCTTACCCCTCTGTGCAACGGTATGTCGGGGCGCCAACACCGACTTAT
ACGGCTTTTGGTGGTGAGGGCATGAGGATGAGTCAAGGTCCAGTCAAATC
AGCGAGGAATGAGAGCGAGATTGAAAAGAGGGAGATGATTCGGCAGGCGA
CGCTTGCGAGGATGGAAGGAGGAGGAGGTAGAGTAGGAGATGGAGGAAGA
GGGACAGGTGCGGGGACGGCGTCTTTATCGTAGATGTATTCCGGTCCCGC
AACGGGCACTGGAACTACGGTGTACCTAAATGTCTACGACCTCCACACAG
CAAACCGATATGCCCACACTTTCGGGGTTGGCGTCTATCATACTGGCGTG
GAGATAGCCGGGAACGAATACACTTATGCAGGTGGCGCTGGTATATTTGC
GATGTCCCCAAAGGTGGCGCCAGGTGCGGTTTTCCGTGAGTCTATACGCC
TGGGAAACCTGGTTGACGCACCTGGAGCTTTGCGGCGGGCGCTGGACATT
CTGAGACCAGACTTCGGGCCAGACGATTACAGCTTAGTCAAGAACAATTG
TAACCATTTTGCCAACGCCCTCGTCATGGAGCTTTTGGGCAAGCCCATTC
CCAGCTACCTCAATCGTCTGGCCTCTTTTGGTTCATTTTTCTCCTGCTTC
CTTCCCGCGGATATGACGAGCCAAGCGCCCGTGAATCAAGAAGGAGGTGG
TGGAGGAGGTGCTGCTTACCCCTCTGTGCAACGGTATGTCGGGGCGCCAA
CACCGACTTATACGGCTTTTGGTGGTGAGGGCATGAGGATGAGTCAAGGT
CCAGTCAAATCAGCGAGGAATGAGAGCGAGATTGAAAAGAGGGAGATGAT
TCGGCAGGCGACGCTTGCGAGGATGGAAGGAGGAGGAGGTAGAGTAGGAG
ATGGAGGAAGAGGGACAGGTGCGGGGACGGCGTCTTTATCGTAG

Synonyms

Publications