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Properties
| Property Name | Value |
|---|
| TranscriptId | 572578 |
| Track | FilteredModels2 |
| ProteinId | 572492 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_1 | supercontig | scaffold_1:826594..830614 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_1517 ID=mRNA_1517|Name=jgi.p|Nanoce1779_2|572492|organism=Nannochloropsis oceanica|type=mRNA|length=3227bp
TTGTGGGGCGCTTGAGGGTAGGTTTGCTTTGGCTTTCCTTTCTAGCCCAG
CGCGTTTTGAAAATGTAACCGAAATGGAAATAAGAGAAAGTTTGGTTGGG
GTTAAAGCAGAGGTCAAAGCAAACAACGAAGCACAGACAATCATAGTGAG
GAGGGGGCGCATGAGGACTGGAGTCTCGTCAATGGCCGCAAGCTCTAACC
TTGTTTACGCGCAAATGAGAAACTCTTGGGAGCTTGGGAGCGTGCCACGA
ATCACTTGCTGCGATTAGATCTACAGCTGCCTCCTTGACGTTGACATTCC
CACTCACCAACGCGCTGACCCAGTCTCACTTTCTCATTCTTCCTATTATC
GTCATACACACAGGGACTTGTCACAACGGGTGATTTCGCCGGCCCTTCGC
TTCCTTTCAGGCCTAGCTGCACCAATAACCACATCATCATCGTTGTCATC
TTCAATCGCCATCGCCATGGTGCGCGTTCCTCCCTCTGCCTTTGCCGAGG
CCACGGGCGGCGCCATTGGTGCGCTATGGACAACGCTGCTGTTTCATCCC
CTAGATGTCGCCAAGCTCCGCCTCCAAGCAGAGGCCGACGCAGAGGAGGA
TGAGAAAGGGTTGGGGGGTAGGGAAGAGGACGAGGAGGGCAAGACGGACG
AGCGATTGCCCGTGGTGATGGAGCAAGGCACCAGCACCAGTGCGAGTAGC
AGCAGTGCTTCCTCGAGTTACACGCCTCCTGGTGATGGTGCAATGAAGAA
GGGGCCCAAGACCTTTTTGGGAGAGGCATTGGTGGTGCTCAAGCAACCCG
ACTTGTGGTACGCGGGACTAGGCTTGAAACTTCAACTATCCATCCTTTCC
ACCTTCGTTTACTTCTACGTCTACAGTTCCCTTAAACGCAGCTTCGCACG
CGTATTCAAGCGTCCCGTCACCTTCCTCCCCAATCTTCTCCTTGCCTCTC
TGGCTGGAGTGGTGAACATTTTAATCACCATGCCACTGGACACAATAGTC
ACTCGCCTCCAAGTCGCTCCTCGAGGGCAACGTCCCTCTTTCCAAGAAAT
GGTGCGTTTATTATGGGAGGAGCAGCAGCAACAACGGCAGCCGGCTTCGC
AAAAGCAAGCCTTGCTTCAAATTACTCGTCGACTCTCCCGCTTCTGGCAC
GGCCTCCTTCCTGCCCTCCTCCTTACATCCAATCCGGCCATTAATTACGC
TGCCTACGATGCAATGAAGGCGCTAATTCCCCTCCCTTCTCAACGGAAAT
ACCACAACGTCAAAGAAACGTTTTTAATCGGAATTCTCTCTAAATTCCTT
GCCACGATACTTACATATCCTCTCATCCGGGCAAAAGTCATGATGATGTC
TGAGGGGAAAGGTGGTATAAAGGGAGGCAAAGATGAAGAGCCTGAAGTCA
GCTTGATGACGTTGTCCCCTAGCTTTATGCTGGCGCAGGAGAGGAAGGGT
TTAGGAAGTATTTTGAGACAGTTGGTGAAGCAGGGAGGGTTGCGGGAGCT
CTATGTGGGCTTAGATGGGCAAATTATAAATACGGCATTGAAGAATGCGA
CACTGTTGAATACGAAGGATAGGGTTAGTCGGATCACGAGCTATATCATG
CGGCATTTCGCGTCGTTCTAGGGAGGGAGGGTCGGAGGTTGATTTGATGG
AGAAATGAGCCAAGGCAAGGATGCGAGGACGAAAACCCTAGCACTATTGG
TCAAAAAGCAAAAACGCAATAAACTTGAAAGGCACGGTCAATGAAATTAA
AAGGTGTGTGTGCGTTTTGAGTATGCACATGGGCCCGCGAAGCTTGTCGT
CATCATACTTCACTCAGAGAGGGCGCTATTGCTATAGCTCTTGCCCAGCA
TGACAGACTCCAGCACTCTCACTTTTGACCGCACACTTCCACGCAACAAT
GTTTCATACATTCGGATAAATAGCTGTTTCCAAGATCACCAGGTTGGATC
TGTGGAACTGAACAACCAGCGAGTCGAAAGCAGGAGCCCGAGCGACAAGC
ACCACACCGACTGCCAGTCAAGCAATGTATTCCGGTCCCGCAACGGGCAC
TGGAACTACGGTGTACCTAAATGTCTACGACCTCCACACAGCAAACCGAT
ATGCCCACACTTTCGGGGTTGGCGTCTATCATACTGGCGTGGAGATAGCC
GGGAACGAATACACTTATGCAGGTGGCGCTGGTATATTTGCGATGTCCCC
AAAGGTGGCGCCAGGTGCGGTTTTCCGTGAGTCTATACGCCTGGGAAACC
TGGTTGACGCACCTGGAGCTTTGCGGCGGGCGCTGGACATTCTGAGACCA
GACTTCGGGCCAGACGATTACAGCTTAGTCAAGAACAATTGTAACCATTT
TGCCAACGCCCTCGTCATGGAGCTTTTGGGCAAGCCCATTCCCAGCTACC
TCAATCGTCTGGCCTCTTTTGGTTCATTTTTCTCCTGCTTCCTTCCCGCG
GATATGACGAGCCAAGCGCCCGTGAATCAAGAAGGAGGTGGTGGAGGAGG
TGCTGCTTACCCCTCTGTGCAACGGTATGTCGGGGCGCCAACACCGACTT
ATACGGCTTTTGGTGGTGAGGGCATGAGGATGAGTCAAGGTCCAGTCAAA
TCAGCGAGGAATGAGAGCGAGATTGAAAAGAGGGAGATGATTCGGCAGGC
GACGCTTGCGAGGATGGAAGGAGGAGGAGGTAGAGTAGGAGATGGAGGAA
GAGGGACAGGTGCGGGGACGGCGTCTTTATCGTAGTGGGATTTTTGTTAT
TGAAGAATCACAATATATTTACACAGCAGTGAAACAGAGTGGTAAATGAT
TGAGAACGATCACAAGTATGGGGGGGGAAGTACTTGAGCGGGAAATGAGT
GTCAAAAAGTCACATTATTGGAAAACTCAAACCCACGGAGAACGCTCCGA
TGCGATGAATTTTGATGTGCGGACGTTGGAAGGCTCCAAAATCACAATCG
TCACTTTCCTCAGTGAGTTGGCCACTGGTGGATGGACGCCTGCACCACGC
ACATAACCTATCACCAGCACCACTATGCACCACGCACATAACCTATCACA
TCGTAACGTCCCGAGCCGGATGGAGAGAGCTTTGGGTGGAGTTTCCGTGT
GTCACGTGCCGTGCCTTACACACCCCATCACTACGTCACTCGATCAATCG
GTAAGCATCCAGCCATTAACGCCGGCAGCGAGCGAGTGGATGGGCAGCAA
GAGAACAAATACCCATTTTTCACTGGA back to topprotein sequence of jgi.p|Nanoce1779_2|572492 >mRNA_1517-protein ID=mRNA_1517-protein|Name=jgi.p|Nanoce1779_2|572492|organism=Nannochloropsis oceanica|type=polypeptide|length=385bp
MVRVPPSAFAEATGGAIGALWTTLLFHPLDVAKLRLQAEADAEEDEKGLG
GREEDEEGKTDERLPVVMEQGTSTSASSSSASSSYTPPGDGAMKKGPKTF
LGEALVVLKQPDLWYAGLGLKLQLSILSTFVYFYVYSSLKRSFARVFKRP
VTFLPNLLLASLAGVVNILITMPLDTIVTRLQVAPRGQRPSFQEMVRLLW
EEQQQQRQPASQKQALLQITRRLSRFWHGLLPALLLTSNPAINYAAYDAM
KALIPLPSQRKYHNVKETFLIGILSKFLATILTYPLIRAKVMMMSEGKGG
IKGGKDEEPEVSLMTLSPSFMLAQERKGLGSILRQLVKQGGLRELYVGLD
GQIINTALKNATLLNTKDRVSRITSYIMRHFASF* back to topmRNA from alignment at scaffold_1:826594..830614+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_1517 ID=mRNA_1517|Name=jgi.p|Nanoce1779_2|572492|organism=Nannochloropsis oceanica|type=mRNA|length=4021bp|location=Sequence derived from alignment at scaffold_1:826594..830614+ (Nannochloropsis oceanica)
TTGTGGGGCGCTTGAGGGTAGGTTTGCTTTGGCTTTCCTTTCTAGCCCAG
CGCGTTTTGAAAATGTAACCGAAATGGAAATAAGAGAAAGTTTGGTTGGG
GTTAAAGCAGAGGTCAAAGCAAACAACGAAGCACAGACAATCATAGTGAG
GAGGGGGCGCATGAGGACTGGAGTCTCGTCAATGGCCGCAAGCTCTAACC
TTGTTTACGCGCAAATGAGAAACTCTTGGGAGCTTGGGAGCGTGCCACGA
ATCACTTGCTGCGATTAGATCTACAGCTGCCTCCTTGACGTTGACATTCC
CACTCACCAACGCGCTGACCCAGTCTCACTTTCTCATTCTTCCTATTATC
GTCATACACACAGGGACTTGTCACAACGGGTGATTTCGCCGGCCCTTCGC
TTCCTTTCAGGCCTAGCTGCACCAATAACCACATCATCATCGTTGTCATC
TTCAATCGCCATCGCCATGGTGCGCGTTCCTCCCTCTGCCTTTGCCGAGG
CCACGGGCGGCGCCATTGGTGCGCTATGGACAACGCTGCTGTTTCATCCC
CTAGATGTCGCCAAGCTCCGCCTCCAAGCAGAGGCCGACGCAGAGGAGGA
TGAGAAAGGGTTGGGGGGTAGGGAAGAGGACGAGGAGGGCAAGACGGACG
AGCGATTGCCCGTGGTGATGGAGCAAGGCACCAGCACCAGTGCGAGTAGC
AGCAGTGCTTCCTCGAGTTACACGCCTCCTGGTGATGGTGCAATGAAGAA
GGGGCCCAAGACCTTTTTGGGAGAGGCATTGGTGGTGCTCAAGCAACCCG
ACTTGTGGTACGCGGGACTAGGTATGTTAAAATGGGTAGGATGGTTTAGT
TGGGTCTCGTGTTTTGTTTGTTGGTTCAATTGACTGAATGAGATGTAGTT
CTCTGTGTTTCTTGACAGTTTTTATCGTATCTCCTTGCAATTGTCTTTCG
CAGCGAGCAATTATCGCTAAGTGTGAGAGGGATTGCTGACTATGCTGATA
CTCCTTCTTCCTCCTCCCACTACTCCTCCTCCTCCTCCTCCTTTCGCTCA
ACCAATCTACAGGCTTGAAACTTCAACTATCCATCCTTTCCACCTTCGTT
TACTTCTACGTCTACAGTTCCCTTAAACGCAGCTTCGCACGCGTATTCAA
GCGTCCCGTCACCTTCCTCCCCAATCTTCTCCTTGCCTCTCTGGCTGGAG
TGGTGAACATTTTAATCACCATGCCACTGGACACAATAGTCACTCGCCTC
CAAGTCGCTCCTCGAGGGCAACGTCCCTCTTTCCAAGAAATGGTGCGTTT
ATTATGGGAGGAGCAGCAGCAACAACGGCAGCCGGCTTCGCAAAAGCAAG
CCTTGCTTCAAATTACTCGTCGACTCTCCCGCTTCTGGCACGGCCTCCTT
CCTGCCCTCCTCCTTACATCCAATCCGGCCATTAATTACGCTGCCTACGA
TGCAATGAAGGCGCTAATTCCCCTCCCTTCTCAACGGAAATACCACAACG
TCAAAGAAACGTTTTTAATCGGAATTCTCTCTAAATTCCTTGCCACGATA
CTTACATATCCTCTCATCCGGGCAAAAGTCATGATGATGTCTGAGGGGAA
AGGTGGTATAAAGGGAGGCAAAGATGAAGAGCCTGAAGTCAGCTTGATGA
CGTTGTCCCCTAGCTTTATGCTGGCGCAGGAGAGGAAGGGTTTAGGAAGT
ATTTTGAGACAGTTGGTGAAGCAGGGAGGGTTGCGGGAGCTCTATGTGGG
CTTAGATGGGCAAATTATAAATACGGCATTGAAGAATGCGACACTGTTGA
ATACGAAGGATAGGGTTAGTCGGATCACGAGCTATATCATGCGGCATTTC
GCGTCGTTCTAGGGAGGGAGGGTCGGAGGTTGATTTGATGGAGAAATGAG
CCAAGGCAAGGATGCGAGGACGAAAACCCTAGCACTATTGGTCAAAAAGC
AAAAACGCAATAAACTTGAAAGGCACGGTCAATGAAATTAAAAGGTGTGT
GTGCGTTTTGAGTATGCACATGGGCCCGCGAAGCTTGTCGTCATCATACT
TCACTCAGAGAGGGCGCTATTGCTATAGCTCTTGCCCAGCATGACAGACT
CCAGCACTCTCACTTTTGACCGCACACTTCCACGCAACAATGTTTCATAC
ATTCGGATAAATAGCTGTTTCCAAGATCACCAGGTTGGATCTGTGGAACT
GAACAACCAGCGAGTCGAAAGCAGGAGCCCGAGCGACAAGCACCACACCG
ACTGCCAGTCAAGCAATGTATTCCGGTCCCGCAACGGGCACTGGAACTAC
GGTGTACCTAAATGTCTACGACCTCCACACAGCAAACCGATATGCCCACA
CTTTCGGGGTTGGCGTCTATCATACTGGTACGTAGGGGGTAGCTGGGCGC
AGGGAGATGGGCGTGGGGAGGGGTGCCCTGGATTTATGCCTTGGAGCATA
TTGATGTGCGTCCTTGCCGGCTTGATCCCGGCCTAAAGGGGCCTGCTAGC
TAAGGATCATGGCATCTTCTCTTAGCTCTCTGCGTTTTGGCTGACCTGTG
TCGTAGCTGTCCTCCCGTGCTCGTCCATCTGTTGACCCCATCCCCCCCAT
CCTTCCGTTTTTCCTGCCCCCTACCTTGTTTTCCAACTCAGGCGTGGAGA
TAGCCGGGAACGAATACACTTATGCAGGTGGCGCTGGTATATTTGCGATG
TCCCCAAAGGTGGCGCCAGGTGCGGTTTTCCGTGAGTCTATACGCCTGGG
AAACCTGGTTGACGCACCTGGAGCTTTGCGGCGGGCGCTGGACATTCTGA
GACCAGACTTCGGGCCAGACGATTACAGCTTAGTCAAGAACAATTGTAAC
CATTTTGTACGTATTCCCCTCTTCTATTTCGGGGTCCAGTAGGATCATGT
GTAGCGTGCTGCGGGAGATTTGCATCACTCAGTGCACTTGCAAATCCGCC
CCCCCTCCCTCCAACAGGCCAACGCCCTCGTCATGGAGCTTTTGGGCAAG
CCCATTCCCAGCTACCTCAATCGTCTGGCCTCTTTTGGTTCATTTTTCTC
CTGCTTCCTTCCCGCGGATATGACGAGCCAAGCGCCCGTGAATCAAGGTG
CGTATCGTCTCTCTCCCTATCTCTCTCCCACACACACACCTCTTTTTTTC
ACTCTCTTTGGAGGAGCTGGTCTCCGTCTTCATATTTTCCTTGGAGGCGA
TGAATTCCCCTCCACTCCTTACTGGTCTTCCCCTCCGCTTCTTTCTGATC
CCCAACTACACACACCAACACACAGAAGGAGGTGGTGGAGGAGGTGCTGC
TTACCCCTCTGTGCAACGGTATGTCGGGGCGCCAACACCGACTTATACGG
CTTTTGGTGGTGAGGGCATGAGGATGAGTCAAGGTCCAGTCAAATCAGCG
AGGAATGAGAGCGAGATTGAAAAGAGGGAGATGATTCGGCAGGCGACGCT
TGCGAGGATGGAAGGAGGAGGAGGTAGAGTAGGAGATGGAGGAAGAGGGA
CAGGTGCGGGGACGGCGTCTTTATCGTAGTGGGATTTTTGTTATTGAAGA
ATCACAATATATTTACACAGCAGTGAAACAGAGTGGTAAATGATTGAGAA
CGATCACAAGTATGGGGGGGGAAGTACTTGAGCGGGAAATGAGTGTCAAA
AAGTCACATTATTGGAAAACTCAAACCCACGGAGAACGCTCCGATGCGAT
GAATTTTGATGTGCGGACGTTGGAAGGCTCCAAAATCACAATCGTCACTT
TCCTCAGTGAGTTGGCCACTGGTGGATGGACGCCTGCACCACGCACATAA
CCTATCACCAGCACCACTATGCACCACGCACATAACCTATCACATCGTAA
CGTCCCGAGCCGGATGGAGAGAGCTTTGGGTGGAGTTTCCGTGTGTCACG
TGCCGTGCCTTACACACCCCATCACTACGTCACTCGATCAATCGGTAAGC
ATCCAGCCATTAACGCCGGCAGCGAGCGAGTGGATGGGCAGCAAGAGAAC
AAATACCCATTTTTCACTGGA back to topCoding sequence (CDS) from alignment at scaffold_1:826594..830614+ >mRNA_1517 ID=mRNA_1517|Name=jgi.p|Nanoce1779_2|572492|organism=Nannochloropsis oceanica|type=CDS|length=2310bp|location=Sequence derived from alignment at scaffold_1:826594..830614+ (Nannochloropsis oceanica)
ATGGTGCGCGTTCCTCCCTCTGCCTTTGCCGAGGCCACGGGCGGCGCCAT
TGGTGCGCTATGGACAACGCTGCTGTTTCATCCCCTAGATGTCGCCAAGC
TCCGCCTCCAAGCAGAGGCCGACGCAGAGGAGGATGAGAAAGGGTTGGGG
GGTAGGGAAGAGGACGAGGAGGGCAAGACGGACGAGCGATTGCCCGTGGT
GATGGAGCAAGGCACCAGCACCAGTGCGAGTAGCAGCAGTGCTTCCTCGA
GTTACACGCCTCCTGGTGATGGTGCAATGAAGAAGGGGCCCAAGACCTTT
TTGGGAGAGGCATTGGTGGTGCTCAAGCAACCCGACTTGTGGTACGCGGG
ACTAGGCTTGAAACTTCAACTATCCATCCTTTCCACCTTCGTTTACTTCT
ACGTCTACAGTTCCCTTAAACGCAGCTTCGCACGCGTATTCAAGCGTCCC
GTCACCTTCCTCCCCAATCTTCTCCTTGCCTCTCTGGCTGGAGTGGTGAA
CATTTTAATCACCATGCCACTGGACACAATAGTCACTCGCCTCCAAGTCG
CTCCTCGAGGGCAACGTCCCTCTTTCCAAGAAATGGTGCGTTTATTATGG
GAGGAGCAGCAGCAACAACGGCAGCCGGCTTCGCAAAAGCAAGCCTTGCT
TCAAATTACTCGTCGACTCTCCCGCTTCTGGCACGGCCTCCTTCCTGCCC
TCCTCCTTACATCCAATCCGGCCATTAATTACGCTGCCTACGATGCAATG
AAGGCGCTAATTCCCCTCCCTTCTCAACGGAAATACCACAACGTCAAAGA
AACGTTTTTAATCGGAATTCTCTCTAAATTCCTTGCCACGATACTTACAT
ATCCTCTCATCCGGGCAAAAGTCATGATGATGTCTGAGGGGAAAGGTGGT
ATAAAGGGAGGCAAAGATGAAGAGCCTGAAGTCAGCTTGATGACGTTGTC
CCCTAGCTTTATGCTGGCGCAGGAGAGGAAGGGTTTAGGAAGTATTTTGA
GACAGTTGGTGAAGCAGGGAGGGTTGCGGGAGCTCTATGTGGGCTTAGAT
GGGCAAATTATAAATACGGCATTGAAGAATGCGACACTGTTGAATACGAA
GGATAGGGTTAGTCGGATCACGAGCTATATCATGCGGCATTTCGCGTCGT
TCTAGATGGTGCGCGTTCCTCCCTCTGCCTTTGCCGAGGCCACGGGCGGC
GCCATTGGTGCGCTATGGACAACGCTGCTGTTTCATCCCCTAGATGTCGC
CAAGCTCCGCCTCCAAGCAGAGGCCGACGCAGAGGAGGATGAGAAAGGGT
TGGGGGGTAGGGAAGAGGACGAGGAGGGCAAGACGGACGAGCGATTGCCC
GTGGTGATGGAGCAAGGCACCAGCACCAGTGCGAGTAGCAGCAGTGCTTC
CTCGAGTTACACGCCTCCTGGTGATGGTGCAATGAAGAAGGGGCCCAAGA
CCTTTTTGGGAGAGGCATTGGTGGTGCTCAAGCAACCCGACTTGTGGTAC
GCGGGACTAGGCTTGAAACTTCAACTATCCATCCTTTCCACCTTCGTTTA
CTTCTACGTCTACAGTTCCCTTAAACGCAGCTTCGCACGCGTATTCAAGC
GTCCCGTCACCTTCCTCCCCAATCTTCTCCTTGCCTCTCTGGCTGGAGTG
GTGAACATTTTAATCACCATGCCACTGGACACAATAGTCACTCGCCTCCA
AGTCGCTCCTCGAGGGCAACGTCCCTCTTTCCAAGAAATGGTGCGTTTAT
TATGGGAGGAGCAGCAGCAACAACGGCAGCCGGCTTCGCAAAAGCAAGCC
TTGCTTCAAATTACTCGTCGACTCTCCCGCTTCTGGCACGGCCTCCTTCC
TGCCCTCCTCCTTACATCCAATCCGGCCATTAATTACGCTGCCTACGATG
CAATGAAGGCGCTAATTCCCCTCCCTTCTCAACGGAAATACCACAACGTC
AAAGAAACGTTTTTAATCGGAATTCTCTCTAAATTCCTTGCCACGATACT
TACATATCCTCTCATCCGGGCAAAAGTCATGATGATGTCTGAGGGGAAAG
GTGGTATAAAGGGAGGCAAAGATGAAGAGCCTGAAGTCAGCTTGATGACG
TTGTCCCCTAGCTTTATGCTGGCGCAGGAGAGGAAGGGTTTAGGAAGTAT
TTTGAGACAGTTGGTGAAGCAGGGAGGGTTGCGGGAGCTCTATGTGGGCT
TAGATGGGCAAATTATAAATACGGCATTGAAGAATGCGACACTGTTGAAT
ACGAAGGATAGGGTTAGTCGGATCACGAGCTATATCATGCGGCATTTCGC
GTCGTTCTAG back to top
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