jgi.p|Nanoce1779_2|572490, mRNA_1516 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|572490
Unique NamemRNA_1516
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1052
Alignment locationscaffold_1:825248..826299 -

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Properties
Property NameValue
TranscriptId572576
TrackFilteredModels2
ProteinId572490
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:825248..826299 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572490gene_1516Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572490mRNA_1516-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1516CDS_1516Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1516 ID=mRNA_1516|Name=jgi.p|Nanoce1779_2|572490|organism=Nannochloropsis oceanica|type=mRNA|length=1052bp
AGGCAAGCCCACACCACCCTACCCCATCAATGGAGATAGAAACCCCCCTA
CCGGGACTGAACGAGGACGAAGGCATTGATGTCTACGACGGCGATGAGTC
CGAGTTGGGAAGCATGGAGGAAGCAGCCGCGGCAGCCATGGCCAACATGG
CACCGGAGCAAAAGAAATTCATGGAGTCCCTTCAGAACATCATGGTGGAG
CTTTCCGAGCCTTGCCAGAAAGAATTCGCGACGTTGATTCAAGCCGGCGG
TATGGACAAGGCAAGCGAGATGTGTCAGGCGGAAATTTCGGCCGCTGCTG
CCAAAGTGCCCGACTTTGCCCGTCAGCAGGAGGCGGCTGTGCAAGCTGCT
GCGGATAAGGCTCGTCGTGCAAATGGCCGTCAGCCCGATCCGAATGCTGG
AAAGTATTTGGCGGTGATGCTGGTGTTGGCGTTTCTGGGCGTTGTAGCTT
ATATTGTGTGGGTGAATAGGAAGTTAAAGGAGGCGGGGATGATGGACAGG
CGGCGAAAGCAGTTGTCGAAAAAGAAGTTGGAGAAAGAAAAGATGCGGGA
GCAGCAGAAGAAAAAGATTATGTAAGAGGCGCTTTAATCGGCGTCCCTTC
ACATCTCTTTGTGACGAGGGAGGGAGATGGGTGGACATTGAAGAGGAAGA
TGAAGATGAAGAGAAGACGTCTATGGTGTACAACTGTAAGCAAGCGAAGC
AATAATAGTGCAGGCACCAAGGGACAAGAAAAGAGTACTTGAAGGGGTCG
TAAGCAAAGACACACACACAAGCGCGATCAATGCGTGTCACCAACATAAA
CATATAGCGGAGCATACAACTGATGGACGAAGGGAATGCCACTGGCAAAA
TAATGCGACAAAATCATTTATTAATTTAGAACAGACACAAAAGCACGAGA
ACAAGAGATCTGCAGCAAAAAGGGGGAAAAAAAACTGAACTTATTATCGG
TTTAGATAACTGGTAAAGCGTACGCTCAAAACTAGACACCGCACTCCGCG
CACACAGCACATTTACATCAAAACAATCAAAATCAACAATACTAGACTAG
AT
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protein sequence of jgi.p|Nanoce1779_2|572490

>mRNA_1516-protein ID=mRNA_1516-protein|Name=jgi.p|Nanoce1779_2|572490|organism=Nannochloropsis oceanica|type=polypeptide|length=182bp
MEIETPLPGLNEDEGIDVYDGDESELGSMEEAAAAAMANMAPEQKKFMES
LQNIMVELSEPCQKEFATLIQAGGMDKASEMCQAEISAAAAKVPDFARQQ
EAAVQAAADKARRANGRQPDPNAGKYLAVMLVLAFLGVVAYIVWVNRKLK
EAGMMDRRRKQLSKKKLEKEKMREQQKKKIM*
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mRNA from alignment at scaffold_1:825248..826299-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1516 ID=mRNA_1516|Name=jgi.p|Nanoce1779_2|572490|organism=Nannochloropsis oceanica|type=mRNA|length=1052bp|location=Sequence derived from alignment at scaffold_1:825248..826299- (Nannochloropsis oceanica)
AGGCAAGCCCACACCACCCTACCCCATCAATGGAGATAGAAACCCCCCTA
CCGGGACTGAACGAGGACGAAGGCATTGATGTCTACGACGGCGATGAGTC
CGAGTTGGGAAGCATGGAGGAAGCAGCCGCGGCAGCCATGGCCAACATGG
CACCGGAGCAAAAGAAATTCATGGAGTCCCTTCAGAACATCATGGTGGAG
CTTTCCGAGCCTTGCCAGAAAGAATTCGCGACGTTGATTCAAGCCGGCGG
TATGGACAAGGCAAGCGAGATGTGTCAGGCGGAAATTTCGGCCGCTGCTG
CCAAAGTGCCCGACTTTGCCCGTCAGCAGGAGGCGGCTGTGCAAGCTGCT
GCGGATAAGGCTCGTCGTGCAAATGGCCGTCAGCCCGATCCGAATGCTGG
AAAGTATTTGGCGGTGATGCTGGTGTTGGCGTTTCTGGGCGTTGTAGCTT
ATATTGTGTGGGTGAATAGGAAGTTAAAGGAGGCGGGGATGATGGACAGG
CGGCGAAAGCAGTTGTCGAAAAAGAAGTTGGAGAAAGAAAAGATGCGGGA
GCAGCAGAAGAAAAAGATTATGTAAGAGGCGCTTTAATCGGCGTCCCTTC
ACATCTCTTTGTGACGAGGGAGGGAGATGGGTGGACATTGAAGAGGAAGA
TGAAGATGAAGAGAAGACGTCTATGGTGTACAACTGTAAGCAAGCGAAGC
AATAATAGTGCAGGCACCAAGGGACAAGAAAAGAGTACTTGAAGGGGTCG
TAAGCAAAGACACACACACAAGCGCGATCAATGCGTGTCACCAACATAAA
CATATAGCGGAGCATACAACTGATGGACGAAGGGAATGCCACTGGCAAAA
TAATGCGACAAAATCATTTATTAATTTAGAACAGACACAAAAGCACGAGA
ACAAGAGATCTGCAGCAAAAAGGGGGAAAAAAAACTGAACTTATTATCGG
TTTAGATAACTGGTAAAGCGTACGCTCAAAACTAGACACCGCACTCCGCG
CACACAGCACATTTACATCAAAACAATCAAAATCAACAATACTAGACTAG
AT
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Coding sequence (CDS) from alignment at scaffold_1:825248..826299-

>mRNA_1516 ID=mRNA_1516|Name=jgi.p|Nanoce1779_2|572490|organism=Nannochloropsis oceanica|type=CDS|length=546bp|location=Sequence derived from alignment at scaffold_1:825248..826299- (Nannochloropsis oceanica)
ATGGAGATAGAAACCCCCCTACCGGGACTGAACGAGGACGAAGGCATTGA
TGTCTACGACGGCGATGAGTCCGAGTTGGGAAGCATGGAGGAAGCAGCCG
CGGCAGCCATGGCCAACATGGCACCGGAGCAAAAGAAATTCATGGAGTCC
CTTCAGAACATCATGGTGGAGCTTTCCGAGCCTTGCCAGAAAGAATTCGC
GACGTTGATTCAAGCCGGCGGTATGGACAAGGCAAGCGAGATGTGTCAGG
CGGAAATTTCGGCCGCTGCTGCCAAAGTGCCCGACTTTGCCCGTCAGCAG
GAGGCGGCTGTGCAAGCTGCTGCGGATAAGGCTCGTCGTGCAAATGGCCG
TCAGCCCGATCCGAATGCTGGAAAGTATTTGGCGGTGATGCTGGTGTTGG
CGTTTCTGGGCGTTGTAGCTTATATTGTGTGGGTGAATAGGAAGTTAAAG
GAGGCGGGGATGATGGACAGGCGGCGAAAGCAGTTGTCGAAAAAGAAGTT
GGAGAAAGAAAAGATGCGGGAGCAGCAGAAGAAAAAGATTATGTAA
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Synonyms
Publications