jgi.p|Nanoce1779_2|572482, mRNA_1514 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|572482
Unique NamemRNA_1514
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1109
Alignment locationscaffold_1:819041..820254 -

Link to JBrowse

Properties
Property NameValue
TranscriptId572568
TrackFilteredModels2
ProteinId572482
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:819041..820254 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572482gene_1514Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572482mRNA_1514-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1514CDS_1514Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1514 ID=mRNA_1514|Name=jgi.p|Nanoce1779_2|572482|organism=Nannochloropsis oceanica|type=mRNA|length=1109bp
GTAGTAGCAGCAGTAGTAGCAGCACCATCCCTCATGCTGTCGGGTTCGCT
TTATTCGGTGAGAATGCCTTAAGTACGGAGGATGTGGGCCGACTAGCTTG
CAGTTTGTTTGGATCGTCCTGGCTTGGCAATTTTTCTTTGGATGAACGGT
TAACCCGTCATTTGTTCGTCCCCTCCAATATCACGTTGGGGAAGCAACCG
CCTTGCTGTAAATATCAGGCGGTGGAGGAAACACACGCTCACGATTTGCC
TTTGTTTCGGTTGCATTCTGTGTTGTTTCCGGGATGTTCTCTGATGCTGA
AGATTTTCGAACCGAGGTATCGCCGGATGGTGAAGCAAGCGTTGGAGCGG
AATGAGCCGTTTGGACTTTTGAACGCGGATGCGAGTGTGGGGACGTTGGC
TAGCATAACGGAGGTGTACCGCATGGAGGAAGACACCGGCATCAGCATCA
TCAAGATCACAGGCACCCGCCGCTTTGAAGTTCAGGCAAGCCACGTGGCC
GACGACAGCTTCGGGCTTTTGCGCGCCACAACTGCCAAGTTCTTTGAAGA
GGACCCCGTGGAGGACATGGAGGAGCTAGAGTCCCTGCGAGTGCAAGCCC
GGGCATGTCTAGCGAGCTCTCTGGCAGCGGCCTCGGCGTCGGCAATGGGT
CCACCGCCACCGTCGTTTTTGATGCAGGTAGGACAGCAGCAAGAGGGGAG
CGCGGGAGGGAAGGAGGCGGCGATACTTGCGGAGGAGTCGTTTGTGTTAA
GTCAGTGGTTGGTAGATTCATATCAGAAAGTGTTGCCGGAACGGAAGAAG
ATGGAATGGCTAAGGACGACAAGCACCGCCACGAGAATGAGGGATTGTCT
CAATTTGTTGTTGAGTGTCGTCAGGCGAGGGATGGGTGAAAGAGGTGAAG
GAGGTGGGGGCAGAAAAGGCGGAGGAGCCGCTTTGTGAAATTTAAATAAT
CAAATAAGTGTCAGATGATCTGCAAGAAAGTGATTTCTTTCTTATACATC
TATATACAAAAGCCACTCATTCGTTTAATTATCTCAATCATCATCATCGA
TGCAGTCAAAATTGCTCTTTCTCCTCCTTTTCCCTCTCCTCCTCGTCTTC
CTCGTCCTC
back to top

protein sequence of jgi.p|Nanoce1779_2|572482

>mRNA_1514-protein ID=mRNA_1514-protein|Name=jgi.p|Nanoce1779_2|572482|organism=Nannochloropsis oceanica|type=polypeptide|length=215bp
MLKIFEPRYRRMVKQALERNEPFGLLNADASVGTLASITEVYRMEEDTGI
SIIKITGTRRFEVQASHVADDSFGLLRATTAKFFEEDPVEDMEELESLRV
QARACLASSLAAASASAMGPPPPSFLMQVGQQQEGSAGGKEAAILAEESF
VLSQWLVDSYQKVLPERKKMEWLRTTSTATRMRDCLNLLLSVVRRGMGER
GEGGGGRKGGGAAL*
back to top

mRNA from alignment at scaffold_1:819041..820254-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1514 ID=mRNA_1514|Name=jgi.p|Nanoce1779_2|572482|organism=Nannochloropsis oceanica|type=mRNA|length=1214bp|location=Sequence derived from alignment at scaffold_1:819041..820254- (Nannochloropsis oceanica)
GTAGTAGCAGCAGTAGTAGCAGCACCATCCCTCATGCTGTCGGGTTCGCT
TTATTCGGTGAGAATGCCTTAAGTACGGAGGATGTGGGCCGACTAGCTTG
CAGTTTGTTTGGATCGTCCTGGCTTGGCAATTTTTCTTTGGATGAACGGT
TAACCCGTCATTTGTTCGTCCCCTCCAATATCACGTTGGGGAAGCAACCG
CCTTGCTGTAAATATCAGGCGGTGGAGGAAACACACGCTCACGATTTGCC
TTTGTTTCGGTTGCATTCTGTGTTGTTTCCGGGATGTTCTCTGATGCTGA
AGATTTTCGAACCGAGGTATCGCCGGATGGTGAAGCAAGCGTTGGAGCGG
AATGAGCCGTTTGGACTTTTGAACGCGGATGCGAGTGTGGGGACGTTGGC
TAGCATAACGGTACGTACATTCACTTTTCCACTCAATCCATGTTTTAGCG
GTGGAAACTATCACCCCTGATTTCTTCGCTCTCTCGCTCCCTACTTTTTC
CCTCGCCCCTAACAGGAGGTGTACCGCATGGAGGAAGACACCGGCATCAG
CATCATCAAGATCACAGGCACCCGCCGCTTTGAAGTTCAGGCAAGCCACG
TGGCCGACGACAGCTTCGGGCTTTTGCGCGCCACAACTGCCAAGTTCTTT
GAAGAGGACCCCGTGGAGGACATGGAGGAGCTAGAGTCCCTGCGAGTGCA
AGCCCGGGCATGTCTAGCGAGCTCTCTGGCAGCGGCCTCGGCGTCGGCAA
TGGGTCCACCGCCACCGTCGTTTTTGATGCAGGTAGGACAGCAGCAAGAG
GGGAGCGCGGGAGGGAAGGAGGCGGCGATACTTGCGGAGGAGTCGTTTGT
GTTAAGTCAGTGGTTGGTAGATTCATATCAGAAAGTGTTGCCGGAACGGA
AGAAGATGGAATGGCTAAGGACGACAAGCACCGCCACGAGAATGAGGGAT
TGTCTCAATTTGTTGTTGAGTGTCGTCAGGCGAGGGATGGGTGAAAGAGG
TGAAGGAGGTGGGGGCAGAAAAGGCGGAGGAGCCGCTTTGTGAAATTTAA
ATAATCAAATAAGTGTCAGATGATCTGCAAGAAAGTGATTTCTTTCTTAT
ACATCTATATACAAAAGCCACTCATTCGTTTAATTATCTCAATCATCATC
ATCGATGCAGTCAAAATTGCTCTTTCTCCTCCTTTTCCCTCTCCTCCTCG
TCTTCCTCGTCCTC
back to top

Coding sequence (CDS) from alignment at scaffold_1:819041..820254-

>mRNA_1514 ID=mRNA_1514|Name=jgi.p|Nanoce1779_2|572482|organism=Nannochloropsis oceanica|type=CDS|length=1290bp|location=Sequence derived from alignment at scaffold_1:819041..820254- (Nannochloropsis oceanica)
GAGGTGTACCGCATGGAGGAAGACACCGGCATCAGCATCATCAAGATCAC
AGGCACCCGCCGCTTTGAAGTTCAGGCAAGCCACGTGGCCGACGACAGCT
TCGGGCTTTTGCGCGCCACAACTGCCAAGTTCTTTGAAGAGGACCCCGTG
GAGGACATGGAGGAGCTAGAGTCCCTGCGAGTGCAAGCCCGGGCATGTCT
AGCGAGCTCTCTGGCAGCGGCCTCGGCGTCGGCAATGGGTCCACCGCCAC
CGTCGTTTTTGATGCAGGTAGGACAGCAGCAAGAGGGGAGCGCGGGAGGG
AAGGAGGCGGCGATACTTGCGGAGGAGTCGTTTGTGTTAAGTCAGTGGTT
GGTAGATTCATATCAGAAAGTGTTGCCGGAACGGAAGAAGATGGAATGGC
TAAGGACGACAAGCACCGCCACGAGAATGAGGGATTGTCTCAATTTGTTG
TTGAGTGTCGTCAGGCGAGGGATGGGTGAAAGAGGTGAAGGAGGTGGGGG
CAGAAAAGGCGGAGGAGCCGCTTTGTGAATGCTGAAGATTTTCGAACCGA
GGTATCGCCGGATGGTGAAGCAAGCGTTGGAGCGGAATGAGCCGTTTGGA
CTTTTGAACGCGGATGCGAGTGTGGGGACGTTGGCTAGCATAACGGAGGT
GTACCGCATGGAGGAAGACACCGGCATCAGCATCATCAAGATCACAGGCA
CCCGCCGCTTTGAAGTTCAGGCAAGCCACGTGGCCGACGACAGCTTCGGG
CTTTTGCGCGCCACAACTGCCAAGTTCTTTGAAGAGGACCCCGTGGAGGA
CATGGAGGAGCTAGAGTCCCTGCGAGTGCAAGCCCGGGCATGTCTAGCGA
GCTCTCTGGCAGCGGCCTCGGCGTCGGCAATGGGTCCACCGCCACCGTCG
TTTTTGATGCAGGTAGGACAGCAGCAAGAGGGGAGCGCGGGAGGGAAGGA
GGCGGCGATACTTGCGGAGGAGTCGTTTGTGTTAAGTCAGTGGTTGGTAG
ATTCATATCAGAAAGTGTTGCCGGAACGGAAGAAGATGGAATGGCTAAGG
ACGACAAGCACCGCCACGAGAATGAGGGATTGTCTCAATTTGTTGTTGAG
TGTCGTCAGGCGAGGGATGGGTGAAAGAGGTGAAGGAGGTGGGGGCAGAA
AAGGCGGAGGAGCCGCTTTGTGAATGCTGAAGATTTTCGAACCGAGGTAT
CGCCGGATGGTGAAGCAAGCGTTGGAGCGGAATGAGCCGTTTGGACTTTT
GAACGCGGATGCGAGTGTGGGGACGTTGGCTAGCATAACG
back to top
Synonyms
Publications