jgi.p|Nanoce1779_2|572481, mRNA_1513 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|572481
Unique NamemRNA_1513
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length780
Alignment locationscaffold_1:818095..819118 +

Link to JBrowse

Properties
Property NameValue
TranscriptId572567
TrackFilteredModels2
ProteinId572481
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:818095..819118 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572481gene_1513Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572481mRNA_1513-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1513CDS_1513Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1513 ID=mRNA_1513|Name=jgi.p|Nanoce1779_2|572481|organism=Nannochloropsis oceanica|type=mRNA|length=780bp
CAGACCCACAGACAGCCGAGTACGTACGCGAGCCTCACTGCCACGCCTAC
CGCTATTATAGCAGCAAGAGCACATTGCTTTGACATGTCCTCCGAAACGG
CCCCAGCACCAATATATGGCGAAGGTGGAGGAAAAGGGGAAGGAGGCGGG
GGAGAGGAGGTCGACGCCGCAAAGCTTCAGGCACTCGACCTCCCGCTGCT
CCTCACGGCAACTGTGGTCAAGGGCTTTGGAAGGGGAAGCAAACTGCTAG
GGATCCCGACAGCTAACTTGGACATGGAACAAGTAGGAGCCATGGTAGAC
TACTGGCCTAACGGCATCTATTTTGGTTTCGTCTTTCTGCGAGACCAAAT
CTACAAAGCCGTGGCCAGCATCGGCACCAACCCCTACTTCAAAAACAGTC
AGAAGACAGTCGAACCTCACCTCCTGTATGAGTTTCCGGACGACTTTTAT
GGAGAGGAGCTTAAATTTCTTGTTTGTGGGTACGTGCGTCCTGAAGCTTC
CTTTCCTTCGCTTGATGAGCTGGTGAAGGCCATTCGCAATGACATTGCCT
TTGCAAGAGCGGCGTTGGAGGAGCCGGAGTGGAAGAAGTTTTCGAGTAAT
AATTTGGGATGGACTAAGAGTGTGGCATGTTGACTACAGTTGCGGTATTT
GTGGTGGTAGTGTAAGAGGAGGAAGGAGGATTAGAAAAAGGGAGGTTAGG
AGGAGGACGAGGAAGACGAGGAGGAGAGGGAAAAGGAGGAGAAAGAGCAA
TTTTGACTGCATCGATGATGATGATTGAGA
back to top

protein sequence of jgi.p|Nanoce1779_2|572481

>mRNA_1513-protein ID=mRNA_1513-protein|Name=jgi.p|Nanoce1779_2|572481|organism=Nannochloropsis oceanica|type=polypeptide|length=183bp
MSSETAPAPIYGEGGGKGEGGGGEEVDAAKLQALDLPLLLTATVVKGFGR
GSKLLGIPTANLDMEQVGAMVDYWPNGIYFGFVFLRDQIYKAVASIGTNP
YFKNSQKTVEPHLLYEFPDDFYGEELKFLVCGYVRPEASFPSLDELVKAI
RNDIAFARAALEEPEWKKFSSNNLGWTKSVAC*
back to top

mRNA from alignment at scaffold_1:818095..819118+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1513 ID=mRNA_1513|Name=jgi.p|Nanoce1779_2|572481|organism=Nannochloropsis oceanica|type=mRNA|length=1024bp|location=Sequence derived from alignment at scaffold_1:818095..819118+ (Nannochloropsis oceanica)
CAGACCCACAGACAGCCGAGTACGTACGCGAGCCTCACTGCCACGCCTAC
CGCTATTATAGCAGCAAGAGCACATTGCTTTGACATGTCCTCCGAAACGG
CCCCAGCACCAATATATGGCGAAGGTGGAGGAAAAGGGGAAGGAGGCGGG
GGAGAGGAGGTCGACGCCGCAAAGCTTCAGGCACTCGACCTCCCGCTGCT
CCTCACGGCAACTGTGGTCAAGGGCTTTGGAAGGGGAAGCAAACTGCTAG
GGATCCCGACAGGTAAATACAAATTTCCTAAAATTCAAGGTTTCGCCTGT
TTTCTGTGTGCCATCATCCTCTTTCACGCAATTTCCCCTCCTTGTTTCGG
CATTCTTCCAAACACAGCTAACTTGGACATGGAACAAGTAGGAGCCATGG
TAGACTACTGGCCTAACGGCATCTATTTTGGTTTCGTCTTTCTGCGAGAC
CAAATCTACAAAGCCGTGGCCAGCATCGGCACCAACCCCTACTTCAAAAA
CAGTCAGAAGGTACGCTCGAGGGAGTGTCAGACGTTTGACTCGTCGGTTT
CGAAGCTGTGCCTTACTTTAAGACACTACATACATTTATCATTAACCACA
TTTCTGTACCCACTTTTCTTCCTCCCTTACAACACATATCCCTACACAGA
CAGTCGAACCTCACCTCCTGTATGAGTTTCCGGACGACTTTTATGGAGAG
GAGCTTAAATTTCTTGTTTGTGGGTACGTGCGTCCTGAAGCTTCCTTTCC
TTCGCTTGATGAGCTGGTGAAGGCCATTCGCAATGACATTGCCTTTGCAA
GAGCGGCGTTGGAGGAGCCGGAGTGGAAGAAGTTTTCGAGTAATAATTTG
GGATGGACTAAGAGTGTGGCATGTTGACTACAGTTGCGGTATTTGTGGTG
GTAGTGTAAGAGGAGGAAGGAGGATTAGAAAAAGGGAGGTTAGGAGGAGG
ACGAGGAAGACGAGGAGGAGAGGGAAAAGGAGGAGAAAGAGCAATTTTGA
CTGCATCGATGATGATGATTGAGA
back to top

Coding sequence (CDS) from alignment at scaffold_1:818095..819118+

>mRNA_1513 ID=mRNA_1513|Name=jgi.p|Nanoce1779_2|572481|organism=Nannochloropsis oceanica|type=CDS|length=1647bp|location=Sequence derived from alignment at scaffold_1:818095..819118+ (Nannochloropsis oceanica)
ATGTCCTCCGAAACGGCCCCAGCACCAATATATGGCGAAGGTGGAGGAAA
AGGGGAAGGAGGCGGGGGAGAGGAGGTCGACGCCGCAAAGCTTCAGGCAC
TCGACCTCCCGCTGCTCCTCACGGCAACTGTGGTCAAGGGCTTTGGAAGG
GGAAGCAAACTGCTAGGGATCCCGACAGCTAACTTGGACATGGAACAAGT
AGGAGCCATGGTAGACTACTGGCCTAACGGCATCTATTTTGGTTTCGTCT
TTCTGCGAGACCAAATCTACAAAGCCGTGGCCAGCATCGGCACCAACCCC
TACTTCAAAAACAGTCAGAAGACAGTCGAACCTCACCTCCTGTATGAGTT
TCCGGACGACTTTTATGGAGAGGAGCTTAAATTTCTTGTTTGTGGGTACG
TGCGTCCTGAAGCTTCCTTTCCTTCGCTTGATGAGCTGGTGAAGGCCATT
CGCAATGACATTGCCTTTGCAAGAGCGGCGTTGGAGGAGCCGGAGTGGAA
GAAGTTTTCGAGTAATAATTTGGGATGGACTAAGAGTGTGGCATGTTGAA
TGTCCTCCGAAACGGCCCCAGCACCAATATATGGCGAAGGTGGAGGAAAA
GGGGAAGGAGGCGGGGGAGAGGAGGTCGACGCCGCAAAGCTTCAGGCACT
CGACCTCCCGCTGCTCCTCACGGCAACTGTGGTCAAGGGCTTTGGAAGGG
GAAGCAAACTGCTAGGGATCCCGACAGCTAACTTGGACATGGAACAAGTA
GGAGCCATGGTAGACTACTGGCCTAACGGCATCTATTTTGGTTTCGTCTT
TCTGCGAGACCAAATCTACAAAGCCGTGGCCAGCATCGGCACCAACCCCT
ACTTCAAAAACAGTCAGAAGACAGTCGAACCTCACCTCCTGTATGAGTTT
CCGGACGACTTTTATGGAGAGGAGCTTAAATTTCTTGTTTGTGGGTACGT
GCGTCCTGAAGCTTCCTTTCCTTCGCTTGATGAGCTGGTGAAGGCCATTC
GCAATGACATTGCCTTTGCAAGAGCGGCGTTGGAGGAGCCGGAGTGGAAG
AAGTTTTCGAGTAATAATTTGGGATGGACTAAGAGTGTGGCATGTTGAAT
GTCCTCCGAAACGGCCCCAGCACCAATATATGGCGAAGGTGGAGGAAAAG
GGGAAGGAGGCGGGGGAGAGGAGGTCGACGCCGCAAAGCTTCAGGCACTC
GACCTCCCGCTGCTCCTCACGGCAACTGTGGTCAAGGGCTTTGGAAGGGG
AAGCAAACTGCTAGGGATCCCGACAGCTAACTTGGACATGGAACAAGTAG
GAGCCATGGTAGACTACTGGCCTAACGGCATCTATTTTGGTTTCGTCTTT
CTGCGAGACCAAATCTACAAAGCCGTGGCCAGCATCGGCACCAACCCCTA
CTTCAAAAACAGTCAGAAGACAGTCGAACCTCACCTCCTGTATGAGTTTC
CGGACGACTTTTATGGAGAGGAGCTTAAATTTCTTGTTTGTGGGTACGTG
CGTCCTGAAGCTTCCTTTCCTTCGCTTGATGAGCTGGTGAAGGCCATTCG
CAATGACATTGCCTTTGCAAGAGCGGCGTTGGAGGAGCCGGAGTGGAAGA
AGTTTTCGAGTAATAATTTGGGATGGACTAAGAGTGTGGCATGTTGA
back to top
Synonyms
Publications