jgi.p|Nanoce1779_2|9462, mRNA_1512 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|9462
Unique NamemRNA_1512
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length878
Alignment locationscaffold_1:817137..818014 -

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Properties
Property NameValue
TranscriptId9548
TrackFilteredModels2
ProteinId9462
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:817137..818014 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|9462gene_1512Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|9462mRNA_1512-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1512CDS_1512Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1512 ID=mRNA_1512|Name=jgi.p|Nanoce1779_2|9462|organism=Nannochloropsis oceanica|type=mRNA|length=878bp
TTGGCGTCGGTGTTGTCTTGCGTGTCCACGCGTTGTTGCCCACCCTTTTA
TCCAGCCATGCACGGCCTCACCTGGATTACGAAGCCGTAGCTCTTTGCAG
ACCATCAGAGAGACATGACGCGACAGCGGGACTCGCCCAGGCCTTCGAAA
GACTTAATAACGTCCTATCTCGTTTGTCCGCCGAGTCTGCCGTGTAACTT
TTTACTGAATGATGATTGAGATCATCGCTCCCGTGATGCGGGTGCTTCCT
CGTTATTGCTTGACAAGTCACGCACCACATTCCCGCACTCATGACACAAC
ACAGTGTTATAAACGCAATGATGCCCTTCGGTGCTGGCATGGCCCGGCGT
GCCTTGGTTTCCACGTCGCGGCTAGTGGCGGGTGTGGCGTGCCGTGCCGC
CAGGCAACATGTGACGCCCTCGTTCCCTTGTGCCGCTGCTTTAACGTGCT
CCGGCCAACATCAGTCGTCCGCCATGTCCTCGTCCTCATCCTCGTCCTCA
TCATCTTCGGGCAAATTCCCACACTCCTCCTCTTCCTCCCCGTCGTCGTC
GTCCTCCACGCCCGCCTCCCCTCCCTCAGGTAGGGCGTGCGATGAAGCCA
GTAGCGGGAGCATCACCCTGGAATCTAATAATACGACGGGGCCCTTCTTC
GACCTCCGCGTCTTCAACGTTGACGAGGCCATGGAGAAGCTTCACATCCA
GCAGCAAGCCGCGCCGTTGGGCTTCGTGTGGTCGCGAGAAGAGAAACCGG
ACCCTATGATCGATGGTGCACGTATTGGTAAGTGAAAAGGCTTGGAGGGG
TGGCACTGAGGAGATGGGAGAAGGCAGGGCTAAATTATGCCCAGAGCTGT
GACGGACTCATTTGCTTGTTGTTACCTA
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protein sequence of jgi.p|Nanoce1779_2|9462

>mRNA_1512-protein ID=mRNA_1512-protein|Name=jgi.p|Nanoce1779_2|9462|organism=Nannochloropsis oceanica|type=polypeptide|length=165bp
MTQHSVINAMMPFGAGMARRALVSTSRLVAGVACRAARQHVTPSFPCAAA
LTCSGQHQSSAMSSSSSSSSSSSGKFPHSSSSSPSSSSSTPASPPSGRAC
DEASSGSITLESNNTTGPFFDLRVFNVDEAMEKLHIQQQAAPLGFVWSRE
EKPDPMIDGARIGK*
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mRNA from alignment at scaffold_1:817137..818014-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1512 ID=mRNA_1512|Name=jgi.p|Nanoce1779_2|9462|organism=Nannochloropsis oceanica|type=mRNA|length=878bp|location=Sequence derived from alignment at scaffold_1:817137..818014- (Nannochloropsis oceanica)
TTGGCGTCGGTGTTGTCTTGCGTGTCCACGCGTTGTTGCCCACCCTTTTA TCCAGCCATGCACGGCCTCACCTGGATTACGAAGCCGTAGCTCTTTGCAG ACCATCAGAGAGACATGACGCGACAGCGGGACTCGCCCAGGCCTTCGAAA GACTTAATAACGTCCTATCTCGTTTGTCCGCCGAGTCTGCCGTGTAACTT TTTACTGAATGATGATTGAGATCATCGCTCCCGTGATGCGGGTGCTTCCT CGTTATTGCTTGACAAGTCACGCACCACATTCCCGCACTCATGACACAAC ACAGTGTTATAAACGCAATGATGCCCTTCGGTGCTGGCATGGCCCGGCGT GCCTTGGTTTCCACGTCGCGGCTAGTGGCGGGTGTGGCGTGCCGTGCCGC CAGGCAACATGTGACGCCCTCGTTCCCTTGTGCCGCTGCTTTAACGTGCT CCGGCCAACATCAGTCGTCCGCCATGTCCTCGTCCTCATCCTCGTCCTCA TCATCTTCGGGCAAATTCCCACACTCCTCCTCTTCCTCCCCGTCGTCGTC GTCCTCCACGCCCGCCTCCCCTCCCTCAGGTAGGGCGTGCGATGAAGCCA GTAGCGGGAGCATCACCCTGGAATCTAATAATACGACGGGGCCCTTCTTC GACCTCCGCGTCTTCAACGTTGACGAGGCCATGGAGAAGCTTCACATCCA GCAGCAAGCCGCGCCGTTGGGCTTCGTGTGGTCGCGAGAAGAGAAACCGG ACCCTATGATCGATGGTGCACGTATTGGTAAGTGAAAAGGCTTGGAGGGG TGGCACTGAGGAGATGGGAGAAGGCAGGGCTAAATTATGCCCAGAGCTGT GACGGACTCATTTGCTTGTTGTTACCTA
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Coding sequence (CDS) from alignment at scaffold_1:817137..818014-

>mRNA_1512 ID=mRNA_1512|Name=jgi.p|Nanoce1779_2|9462|organism=Nannochloropsis oceanica|type=CDS|length=495bp|location=Sequence derived from alignment at scaffold_1:817137..818014- (Nannochloropsis oceanica)
ATGACACAACACAGTGTTATAAACGCAATGATGCCCTTCGGTGCTGGCAT
GGCCCGGCGTGCCTTGGTTTCCACGTCGCGGCTAGTGGCGGGTGTGGCGT
GCCGTGCCGCCAGGCAACATGTGACGCCCTCGTTCCCTTGTGCCGCTGCT
TTAACGTGCTCCGGCCAACATCAGTCGTCCGCCATGTCCTCGTCCTCATC
CTCGTCCTCATCATCTTCGGGCAAATTCCCACACTCCTCCTCTTCCTCCC
CGTCGTCGTCGTCCTCCACGCCCGCCTCCCCTCCCTCAGGTAGGGCGTGC
GATGAAGCCAGTAGCGGGAGCATCACCCTGGAATCTAATAATACGACGGG
GCCCTTCTTCGACCTCCGCGTCTTCAACGTTGACGAGGCCATGGAGAAGC
TTCACATCCAGCAGCAAGCCGCGCCGTTGGGCTTCGTGTGGTCGCGAGAA
GAGAAACCGGACCCTATGATCGATGGTGCACGTATTGGTAAGTGA
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Synonyms
Publications