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Properties
| Property Name | Value |
|---|
| TranscriptId | 576463 |
| Track | FilteredModels2 |
| ProteinId | 576377 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_3 | supercontig | scaffold_3:390920..393761 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_151 ID=mRNA_151|Name=jgi.p|Nanoce1779_2|576377|organism=Nannochloropsis oceanica|type=mRNA|length=2648bp
GATGACAAGCAATCCGTTGTCTCCACTCCTCGCGCAGTGTGTTCCGGCCC
CGCTACGTCTCGTCTACAGCTATGCTTGGGGCCCCCACCGGGTCCCGGTG
GCCATCCTCTTCCTGTCTGTGGTATGGATGGAGATTGTTTGTGTCCGAGG
TGTGGTATGATGGTGGACATACCATTGGGAAGACGATCTCTCGAGGCAGA
GTTCTCCCCTCTCGGGCGAGCAGGCCAACGGAAAAAAGAGCGAGGCAAGA
CGTTCAAGTTTGTGACTTCTCGCGTGTATGCTTTACTTGTCTTGAGAACT
CATCACGACTCGCGTAAAACACTTGATGTCTTTATAATTCAACAGCGTCA
TTCCGAGGGCCGGAGGTCTTGGTCTCACGCCAAGACGCCGCGCCCAAAAA
AGCAGCCAAGCTTGCTTGCGGTGATCTGCCCTAGGAACGTGTGTGCACCG
CCCCCCCTGCGTTTTTATTAGCTGTATCACACCACCATGGCGCAAACCAC
GTTTCTGATGAAAACTAAACTTACAACATGGCAAGGACAAAAGCGAGTGG
CACGGGCCTGGAGTGGACATGAAGAGGAGGCTAGGAACGACGTAGCGGAG
AACACTAGCACCATCCAAACGTCCCTGCACTCTCGCAGGTCCCTCGGTGG
CTTTGAGCACTTCATGTTCAAAGCTCATCAAATTGGCTGTGGGTTGATTT
ATATGATTGCTGAGCTCGATAACAAAGGGGGCAGTTCTTCTACTGTGCTT
CCTCTCCCTAATGCCCGCCTAGTCGAGCATGCCCTCCGCCTCACCATTGC
ACGACATCCCAATTTACGCGCACGCATCACGGCAGACGGAGAGCAATTGG
AAGTTTTGCCTATGGAGGACGTATCGCCAGCTGCATGGTTTGTACCTTTC
GTTGTAACTGAAGGTCGAGAGGCAGGGGGAGGGGTGGTGGAGTTTGTGAA
GGAGGAGATTAAGCGCACACCTATTGCCCTTGGTCGATGCGAGGGGTCTT
TTTGGCAGCTCTTTCTGGTACAAGAAGGGAATCAGGAGGGAAGGAAGGAG
GGAGGGGCGAATCAATCGTTGGTGGTATTTGCGCACCACAGTATAATGGA
TGGGGAGAGTGTAGTATTGTTTTTGAAGGAGGTAGTGGCGGGAATGGAGG
ACTTGCTCCGACAGGAGGCTTCCAGGGACAGCAACAGCAGTACAAATTGT
AGTAACAGCAGTAGTCGTAATAAGAATGGTGCGGGAAAGGAGCAGTCACC
GGCTTCGTCGGCTTTGGATTTTCTCCCCTCACAAGACGAGCTCTTTGAAA
CGGTTTTGCCATCCACGTCTGGAGACGGGTTGCAGGGTGCCCTAACTTTT
TTGTGGCGACGCATCACTTGGCTTCTCAAACGCCCTTCCGTCCCGTCCGC
CGAAGTCACCACCACCTCACTCTCCCTTCGCAACATGCACATCCTCTCCT
CGCGCATCCAAGGCCCCTTCCTCCATCAGCTCCTCCACCGGTGCCATGCC
GAATACACGACAGTCACAGCTGCACTCGCTGCTGCCACCATACTAGAGTT
AAAGCGACTAATGCCTGAATCTCCTTCGGCGAACTTGAAGATGGAGACGA
TGGTTAGCTTGCGCAAGGCTCTATGTGAGGTGGACTCGGCCCGATATGCG
GGTGCGCTTCAGTGTTTGGCTGCACCCATCGATACAATCGTTACGGTGGG
CGACAGAGACGAGCTATGGGCCCATGCAAGGGGGTATAAGAAAGGGTTGA
CTGAGGCGATGAAAGCAGGGCAGTGGAAGAGGCAGGTGGCGGCCTTTCGG
GCGTTCAAATATGGGATTTATGAAGCTCTGGCGCGCATGGCAGTGTCACC
ACGGATGCAGGGACGGGTTAAAGCGGCGGCAATTTCGAACTTGGGGATTC
TTGTGCATAAGGAAGAGGGAGGGGAGAAAGAGGGGTTGCGGTTAGCCCGA
TTGCAGTGGGGAATCAGCCTGCATGGGATTGGGCAGTATGTGTTTGTTGC
GGCGTCGACGCAGGAGGACTGTCTGAATTTGACTCTTACATGTATGAGTC
CGATGGTCTCGCTGGAATGTGCGCAGGGTTTGTTGGATGGTATCGTCGGA
CGGTTGACTTCGTAAAACTATGGGGTGCAGACTGGGAGTGGGGAAGGTGG
AAGGCTGGAATAGCGGGGGGGAGGGCGCAGGTGGTCATGGATAAAACAAG
TGCCGAATTCTGGGAAGGATGAACGTATAATGGAATGTGTGTGTACTTAT
AAATCTGTAAAGAAGGGAAACGCAAATGTCGCCGTGAATCACTTTTGATG
CATGGGCCGCAACGTACTTGTTCGATGTTGCAGTCTTTCAAAGATGGGCA
AAGCCATAGGACATCATTCACCACAATGAATGTATTGCTTGGAGGCAACC
TTCAGTCCTAAAGCCAGCCGATAATTAGTGCTCTTTAATTTTGTTCTCTC
TATATGATCCTCTTGTGCTGTGGTAGGATTTATTTTACAATATGTATGTG
GCTTTTGCTGGCCAAGCCAATGCTAGATAACAGCACTTCCAGAGACACAT
ACCCACATCACGACGATCATTCTTATACACACAAAACGAAAGCAACCCAT
TTATCCACCAAATGATGAGGCTGGCGGGATAAGCACACATGCTTTACT back to topprotein sequence of jgi.p|Nanoce1779_2|576377 >mRNA_151-protein ID=mRNA_151-protein|Name=jgi.p|Nanoce1779_2|576377|organism=Nannochloropsis oceanica|type=polypeptide|length=543bp
MAQTTFLMKTKLTTWQGQKRVARAWSGHEEEARNDVAENTSTIQTSLHSR
RSLGGFEHFMFKAHQIGCGLIYMIAELDNKGGSSSTVLPLPNARLVEHAL
RLTIARHPNLRARITADGEQLEVLPMEDVSPAAWFVPFVVTEGREAGGGV
VEFVKEEIKRTPIALGRCEGSFWQLFLVQEGNQEGRKEGGANQSLVVFAH
HSIMDGESVVLFLKEVVAGMEDLLRQEASRDSNSSTNCSNSSSRNKNGAG
KEQSPASSALDFLPSQDELFETVLPSTSGDGLQGALTFLWRRITWLLKRP
SVPSAEVTTTSLSLRNMHILSSRIQGPFLHQLLHRCHAEYTTVTAALAAA
TILELKRLMPESPSANLKMETMVSLRKALCEVDSARYAGALQCLAAPIDT
IVTVGDRDELWAHARGYKKGLTEAMKAGQWKRQVAAFRAFKYGIYEALAR
MAVSPRMQGRVKAAAISNLGILVHKEEGGEKEGLRLARLQWGISLHGIGQ
YVFVAASTQEDCLNLTLTCMSPMVSLECAQGLLDGIVGRLTS* back to topmRNA from alignment at scaffold_3:390920..393761- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_151 ID=mRNA_151|Name=jgi.p|Nanoce1779_2|576377|organism=Nannochloropsis oceanica|type=mRNA|length=2842bp|location=Sequence derived from alignment at scaffold_3:390920..393761- (Nannochloropsis oceanica)
GATGACAAGCAATCCGTTGTCTCCACTCCTCGCGCAGTGTGTTCCGGCCC
CGCTACGTCTCGTCTACAGCTATGCTTGGGGCCCCCACCGGGTCCCGGTG
GCCATCCTCTTCCTGTCTGTGGTATGGATGGAGATTGTTTGTGTCCGAGG
TGTGGTATGATGGTGGACATACCATTGGGAAGACGATCTCTCGAGGCAGA
GTTCTCCCCTCTCGGGCGAGCAGGCCAACGGAAAAAAGAGCGAGGCAAGA
CGTTCAAGTTTGTGACTTCTCGCGTGTATGCTTTACTTGTCTTGAGAACT
CATCACGACTCGCGTAAAACACTTGATGTCTTTATAATTCAACAGCGTCA
TTCCGAGGGCCGGAGGTCTTGGTCTCACGCCAAGACGCCGCGCCCAAAAA
AGCAGCCAAGCTTGCTTGCGGTGATCTGCCCTAGGAACGTGTGTGCACCG
CCCCCCCTGCGTTTTTATTAGCTGTATCACACCACCATGGCGCAAACCAC
GTTTCTGATGAAAACTAAACTTACAACATGGCAAGGACAAAAGCGAGTGG
CACGGGCCTGGAGTGGACATGAAGAGGAGGCTAGGAACGACGTAGCGGAG
AACACTAGCACCATCCAAACGTCCCTGCACTCTCGCAGGTCCCTCGGTGG
CTTTGAGCACTTCATGTTCAAAGCTCATCAAATTGGCTGTGGGTTGATTT
ATATGATTGCTGAGCTCGATAACAAAGGGGGCAGTTCTTCTACTGTGCTT
CCTCTCCCTAATGCCCGCCTAGTCGAGCATGCCCTCCGCCTCACCATTGC
ACGACATCCCAATTTACGCGCACGCATCACGGCAGACGGAGAGCAATTGG
AAGTTTTGCCTATGGAGGACGTATCGCCAGCTGCATGGTTTGTACCTTTC
GTTGTAACTGAAGGTCGAGAGGCAGGGGGAGGGGTGGTGGAGTTTGTGAA
GGAGGAGATTAAGCGCACACCTATTGCCCTTGGTCGATGCGAGGGGTCTT
TTTGGCAGCTCTTTCTGGTACAAGAAGGGAATCAGGAGGGAAGGAAGGAG
GGAGGGGCGAATCAATCGTTGGTGGTATTTGCGCACCACAGTATAATGGA
TGGGGAGAGTGTAGTATTGTTTTTGAAGGAGGTAGTGGCGGGAATGGAGG
ACTTGCTCCGACAGGAGGCTTCCAGGGACAGCAACAGCAGTACAAATTGT
AGTAACAGCAGTAGTCGTAATAAGAATGGTGCGGGAAAGGAGCAGTCACC
GGCTTCGTCGGCTTTGGATTTTCTCCCCTCACAAGACGAGCTCTTTGAAA
CGGTTTTGCCATCCACGTCTGGAGACGGGTTGCAGGGTGCCCTAACTTTT
TTGTGGCGACGCATCACTTGGTACGTGTTTTACAATTGAAGGCAGGTTTT
CGTGTCGTGATGTTTATATTTTTGGGTCTGGCGATTTGGTTGGCCGTAGA
TATTGTCTGCTCACATTGCCTGCCCTTTTTTGCGATCACCAGGACAGGGC
GTATTCTGCTCACGCTCGTCATTTCATCAAACTTTTACCCACCTTTTTTC
AATCAAACATACAGGCTTCTCAAACGCCCTTCCGTCCCGTCCGCCGAAGT
CACCACCACCTCACTCTCCCTTCGCAACATGCACATCCTCTCCTCGCGCA
TCCAAGGCCCCTTCCTCCATCAGCTCCTCCACCGGTGCCATGCCGAATAC
ACGACAGTCACAGCTGCACTCGCTGCTGCCACCATACTAGAGTTAAAGCG
ACTAATGCCTGAATCTCCTTCGGCGAACTTGAAGATGGAGACGATGGTTA
GCTTGCGCAAGGCTCTATGTGAGGTGGACTCGGCCCGATATGCGGGTGCG
CTTCAGTGTTTGGCTGCACCCATCGATACAATCGTTACGGTGGGCGACAG
AGACGAGCTATGGGCCCATGCAAGGGGGTATAAGAAAGGGTTGACTGAGG
CGATGAAAGCAGGGCAGTGGAAGAGGCAGGTGGCGGCCTTTCGGGCGTTC
AAATATGGGATTTATGAAGCTCTGGCGCGCATGGCAGTGTCACCACGGAT
GCAGGGACGGGTTAAAGCGGCGGCAATTTCGAACTTGGGGATTCTTGTGC
ATAAGGAAGAGGGAGGGGAGAAAGAGGGGTTGCGGTTAGCCCGATTGCAG
TGGGGAATCAGCCTGCATGGGATTGGGCAGTATGTGTTTGTTGCGGCGTC
GACGCAGGAGGACTGTCTGAATTTGACTCTTACATGTATGAGTCCGATGG
TCTCGCTGGAATGTGCGCAGGGTTTGTTGGATGGTATCGTCGGACGGTTG
ACTTCGTAAAACTATGGGGTGCAGACTGGGAGTGGGGAAGGTGGAAGGCT
GGAATAGCGGGGGGGAGGGCGCAGGTGGTCATGGATAAAACAAGTGCCGA
ATTCTGGGAAGGATGAACGTATAATGGAATGTGTGTGTACTTATAAATCT
GTAAAGAAGGGAAACGCAAATGTCGCCGTGAATCACTTTTGATGCATGGG
CCGCAACGTACTTGTTCGATGTTGCAGTCTTTCAAAGATGGGCAAAGCCA
TAGGACATCATTCACCACAATGAATGTATTGCTTGGAGGCAACCTTCAGT
CCTAAAGCCAGCCGATAATTAGTGCTCTTTAATTTTGTTCTCTCTATATG
ATCCTCTTGTGCTGTGGTAGGATTTATTTTACAATATGTATGTGGCTTTT
GCTGGCCAAGCCAATGCTAGATAACAGCACTTCCAGAGACACATACCCAC
ATCACGACGATCATTCTTATACACACAAAACGAAAGCAACCCATTTATCC
ACCAAATGATGAGGCTGGCGGGATAAGCACACATGCTTTACT back to topCoding sequence (CDS) from alignment at scaffold_3:390920..393761- >mRNA_151 ID=mRNA_151|Name=jgi.p|Nanoce1779_2|576377|organism=Nannochloropsis oceanica|type=CDS|length=3258bp|location=Sequence derived from alignment at scaffold_3:390920..393761- (Nannochloropsis oceanica)
GCTTCTCAAACGCCCTTCCGTCCCGTCCGCCGAAGTCACCACCACCTCAC
TCTCCCTTCGCAACATGCACATCCTCTCCTCGCGCATCCAAGGCCCCTTC
CTCCATCAGCTCCTCCACCGGTGCCATGCCGAATACACGACAGTCACAGC
TGCACTCGCTGCTGCCACCATACTAGAGTTAAAGCGACTAATGCCTGAAT
CTCCTTCGGCGAACTTGAAGATGGAGACGATGGTTAGCTTGCGCAAGGCT
CTATGTGAGGTGGACTCGGCCCGATATGCGGGTGCGCTTCAGTGTTTGGC
TGCACCCATCGATACAATCGTTACGGTGGGCGACAGAGACGAGCTATGGG
CCCATGCAAGGGGGTATAAGAAAGGGTTGACTGAGGCGATGAAAGCAGGG
CAGTGGAAGAGGCAGGTGGCGGCCTTTCGGGCGTTCAAATATGGGATTTA
TGAAGCTCTGGCGCGCATGGCAGTGTCACCACGGATGCAGGGACGGGTTA
AAGCGGCGGCAATTTCGAACTTGGGGATTCTTGTGCATAAGGAAGAGGGA
GGGGAGAAAGAGGGGTTGCGGTTAGCCCGATTGCAGTGGGGAATCAGCCT
GCATGGGATTGGGCAGTATGTGTTTGTTGCGGCGTCGACGCAGGAGGACT
GTCTGAATTTGACTCTTACATGTATGAGTCCGATGGTCTCGCTGGAATGT
GCGCAGGGTTTGTTGGATGGTATCGTCGGACGGTTGACTTCGTAAATGGC
GCAAACCACGTTTCTGATGAAAACTAAACTTACAACATGGCAAGGACAAA
AGCGAGTGGCACGGGCCTGGAGTGGACATGAAGAGGAGGCTAGGAACGAC
GTAGCGGAGAACACTAGCACCATCCAAACGTCCCTGCACTCTCGCAGGTC
CCTCGGTGGCTTTGAGCACTTCATGTTCAAAGCTCATCAAATTGGCTGTG
GGTTGATTTATATGATTGCTGAGCTCGATAACAAAGGGGGCAGTTCTTCT
ACTGTGCTTCCTCTCCCTAATGCCCGCCTAGTCGAGCATGCCCTCCGCCT
CACCATTGCACGACATCCCAATTTACGCGCACGCATCACGGCAGACGGAG
AGCAATTGGAAGTTTTGCCTATGGAGGACGTATCGCCAGCTGCATGGTTT
GTACCTTTCGTTGTAACTGAAGGTCGAGAGGCAGGGGGAGGGGTGGTGGA
GTTTGTGAAGGAGGAGATTAAGCGCACACCTATTGCCCTTGGTCGATGCG
AGGGGTCTTTTTGGCAGCTCTTTCTGGTACAAGAAGGGAATCAGGAGGGA
AGGAAGGAGGGAGGGGCGAATCAATCGTTGGTGGTATTTGCGCACCACAG
TATAATGGATGGGGAGAGTGTAGTATTGTTTTTGAAGGAGGTAGTGGCGG
GAATGGAGGACTTGCTCCGACAGGAGGCTTCCAGGGACAGCAACAGCAGT
ACAAATTGTAGTAACAGCAGTAGTCGTAATAAGAATGGTGCGGGAAAGGA
GCAGTCACCGGCTTCGTCGGCTTTGGATTTTCTCCCCTCACAAGACGAGC
TCTTTGAAACGGTTTTGCCATCCACGTCTGGAGACGGGTTGCAGGGTGCC
CTAACTTTTTTGTGGCGACGCATCACTTGGCTTCTCAAACGCCCTTCCGT
CCCGTCCGCCGAAGTCACCACCACCTCACTCTCCCTTCGCAACATGCACA
TCCTCTCCTCGCGCATCCAAGGCCCCTTCCTCCATCAGCTCCTCCACCGG
TGCCATGCCGAATACACGACAGTCACAGCTGCACTCGCTGCTGCCACCAT
ACTAGAGTTAAAGCGACTAATGCCTGAATCTCCTTCGGCGAACTTGAAGA
TGGAGACGATGGTTAGCTTGCGCAAGGCTCTATGTGAGGTGGACTCGGCC
CGATATGCGGGTGCGCTTCAGTGTTTGGCTGCACCCATCGATACAATCGT
TACGGTGGGCGACAGAGACGAGCTATGGGCCCATGCAAGGGGGTATAAGA
AAGGGTTGACTGAGGCGATGAAAGCAGGGCAGTGGAAGAGGCAGGTGGCG
GCCTTTCGGGCGTTCAAATATGGGATTTATGAAGCTCTGGCGCGCATGGC
AGTGTCACCACGGATGCAGGGACGGGTTAAAGCGGCGGCAATTTCGAACT
TGGGGATTCTTGTGCATAAGGAAGAGGGAGGGGAGAAAGAGGGGTTGCGG
TTAGCCCGATTGCAGTGGGGAATCAGCCTGCATGGGATTGGGCAGTATGT
GTTTGTTGCGGCGTCGACGCAGGAGGACTGTCTGAATTTGACTCTTACAT
GTATGAGTCCGATGGTCTCGCTGGAATGTGCGCAGGGTTTGTTGGATGGT
ATCGTCGGACGGTTGACTTCGTAAATGGCGCAAACCACGTTTCTGATGAA
AACTAAACTTACAACATGGCAAGGACAAAAGCGAGTGGCACGGGCCTGGA
GTGGACATGAAGAGGAGGCTAGGAACGACGTAGCGGAGAACACTAGCACC
ATCCAAACGTCCCTGCACTCTCGCAGGTCCCTCGGTGGCTTTGAGCACTT
CATGTTCAAAGCTCATCAAATTGGCTGTGGGTTGATTTATATGATTGCTG
AGCTCGATAACAAAGGGGGCAGTTCTTCTACTGTGCTTCCTCTCCCTAAT
GCCCGCCTAGTCGAGCATGCCCTCCGCCTCACCATTGCACGACATCCCAA
TTTACGCGCACGCATCACGGCAGACGGAGAGCAATTGGAAGTTTTGCCTA
TGGAGGACGTATCGCCAGCTGCATGGTTTGTACCTTTCGTTGTAACTGAA
GGTCGAGAGGCAGGGGGAGGGGTGGTGGAGTTTGTGAAGGAGGAGATTAA
GCGCACACCTATTGCCCTTGGTCGATGCGAGGGGTCTTTTTGGCAGCTCT
TTCTGGTACAAGAAGGGAATCAGGAGGGAAGGAAGGAGGGAGGGGCGAAT
CAATCGTTGGTGGTATTTGCGCACCACAGTATAATGGATGGGGAGAGTGT
AGTATTGTTTTTGAAGGAGGTAGTGGCGGGAATGGAGGACTTGCTCCGAC
AGGAGGCTTCCAGGGACAGCAACAGCAGTACAAATTGTAGTAACAGCAGT
AGTCGTAATAAGAATGGTGCGGGAAAGGAGCAGTCACCGGCTTCGTCGGC
TTTGGATTTTCTCCCCTCACAAGACGAGCTCTTTGAAACGGTTTTGCCAT
CCACGTCTGGAGACGGGTTGCAGGGTGCCCTAACTTTTTTGTGGCGACGC
ATCACTTG back to top
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