jgi.p|Nanoce1779_2|572466, mRNA_1509 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|572466
Unique NamemRNA_1509
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length652
Alignment locationscaffold_1:810326..811462 +

Link to JBrowse

Properties
Property NameValue
TranscriptId572552
TrackFilteredModels2
ProteinId572466
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:810326..811462 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572466gene_1509Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572466mRNA_1509-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1509CDS_1509Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1509 ID=mRNA_1509|Name=jgi.p|Nanoce1779_2|572466|organism=Nannochloropsis oceanica|type=mRNA|length=652bp
ACAGCTTCACCCACGATCTACAGACATTCTTTTAAGGTGTGGCACCGCCC
TAAATCCTTGGAAAGCTTCAGTGCCCTCATAATTCGACCACCGCCGTCGC
CTTATCTCGGCTTCGCTCCCCGGCCGTCATACCGTCATCGCCTCAAGAGT
CCTTCCCTCTAGAGCTCATATCACGCTGACTCACGTCTAGGCCGTTCTTT
CTGTAGCACATAGTAGCACAACAGCGAACATTCACGGCCACTGTCTCCCA
AAAGCAACATGCACCCGCCGCTTCATCGGCCACATCCTGACTGTCAGCAC
GTGATTGACGCTCTGCTTTCGTGCCACCGTCAGCATCCCTTGGCCAAGTT
TTGGGGGGCGTGCAACGAGGAGAAGTGGGCATTGGACAAATGCTTTCGGG
TGGAGAAGGAAGACCGCCGGAAGCAGAATTTTGCGAAGGCCCCTCGCGAT
GATGGGGCATGGTCCAAGATTGTGGCACAAAAAGAAGCGCAAGTGCAGGC
AGAGAAGGAAAGCCAATGACTGGTAGGAACGGAATCACGCGGACGGCAAG
TCTATTATATAAAGCTTGGACGACTGGACTCAAACAATTGTACATATTTT
GAAAGAGAAACCTTAGTTTAAAAAGAAGGAAATAATTCATGTCTTGCGCT
CA
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protein sequence of jgi.p|Nanoce1779_2|572466

>mRNA_1509-protein ID=mRNA_1509-protein|Name=jgi.p|Nanoce1779_2|572466|organism=Nannochloropsis oceanica|type=polypeptide|length=87bp
MHPPLHRPHPDCQHVIDALLSCHRQHPLAKFWGACNEEKWALDKCFRVEK
EDRRKQNFAKAPRDDGAWSKIVAQKEAQVQAEKESQ*
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mRNA from alignment at scaffold_1:810326..811462+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1509 ID=mRNA_1509|Name=jgi.p|Nanoce1779_2|572466|organism=Nannochloropsis oceanica|type=mRNA|length=1137bp|location=Sequence derived from alignment at scaffold_1:810326..811462+ (Nannochloropsis oceanica)
ACAGCTTCACCCACGATCTACAGACATTCTTTTAAGGTGTGGCACCGCCC
TAAATCCTTGGAAAGCTTCAGTGCCCTCATAATTCGACCACCGCCGTCGC
CTTATCTCGGCTTCGCTCCCCGGCCGTCATACCGTCATCGCCTCAAGAGT
CCTTCCCTCTAGAGCTCATATCACGCTGACTCACGTCTAGGCCGTTCTTT
CTGTAGCACATAGTAGCACAACAGCGAACATTCACGGCCACTGTCTCCCA
AAAGCAACATGCACCCGCCGCTTCATCGGCCACATCCTGACTGTCAGCAC
GTAAGTTTGTTTCCGTTTGTACATGGGGAGGAAGGCAAATGTTTAATCAG
TACCCACCCGTAAAGTGGAGAAGAGAAGGGGAAGAGAGGTTGGGGCGAGC
TATTGAGAACGCAGGGAGAAAGGAACGCAAATCCATTTGACTCGTGTGCT
GTCAGAACGAAAACCCCGTCCTTTGGCAACCTCCCCTCCCCAAGGCGTGC
TTTCGTCCCAGCCCCCCCCTCAAGCAGACCGCACCCTTCACATTGTGAAT
GAAAGCATTGAAGCATGCGTGCAGCAAAGTACCTGATTTTCATTGTAATC
CTCACTGTCCTCATGCAGGTGATTGACGCTCTGCTTTCGTGCCACCGTCA
GCATCCCTTGGCCAAGTTTTGGGGGGCGTGCAACGAGGAGAAGTGGGCAT
TGGACAAATGCTTTCGGGTACGTACTTCAGCCAAGACACCTTTGTAAGAG
TTTTGACATAAACTGGAAAGTTCGCAATGCATCATACCTGCGTGATGGGG
TTCTTCGCGTTTTTGACCTCTTACATTGTTTTTCCCCCTCTCATCTCCTC
GTCTTTCACACAATCCCATTCCTCGATAATTAAGGTGGAGAAGGAAGACC
GCCGGAAGCAGAATTTTGCGAAGGCCCCTCGCGATGATGGGGCATGGTCC
AAGATTGTGGCACAAAAAGAAGCGCAAGTGCAGGCAGAGAAGGAAAGCCA
ATGACTGGTAGGAACGGAATCACGCGGACGGCAAGTCTATTATATAAAGC
TTGGACGACTGGACTCAAACAATTGTACATATTTTGAAAGAGAAACCTTA
GTTTAAAAAGAAGGAAATAATTCATGTCTTGCGCTCA
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Coding sequence (CDS) from alignment at scaffold_1:810326..811462+

>mRNA_1509 ID=mRNA_1509|Name=jgi.p|Nanoce1779_2|572466|organism=Nannochloropsis oceanica|type=CDS|length=783bp|location=Sequence derived from alignment at scaffold_1:810326..811462+ (Nannochloropsis oceanica)
ATGCACCCGCCGCTTCATCGGCCACATCCTGACTGTCAGCACGTGATTGA
CGCTCTGCTTTCGTGCCACCGTCAGCATCCCTTGGCCAAGTTTTGGGGGG
CGTGCAACGAGGAGAAGTGGGCATTGGACAAATGCTTTCGGGTGGAGAAG
GAAGACCGCCGGAAGCAGAATTTTGCGAAGGCCCCTCGCGATGATGGGGC
ATGGTCCAAGATTGTGGCACAAAAAGAAGCGCAAGTGCAGGCAGAGAAGG
AAAGCCAATGAATGCACCCGCCGCTTCATCGGCCACATCCTGACTGTCAG
CACGTGATTGACGCTCTGCTTTCGTGCCACCGTCAGCATCCCTTGGCCAA
GTTTTGGGGGGCGTGCAACGAGGAGAAGTGGGCATTGGACAAATGCTTTC
GGGTGGAGAAGGAAGACCGCCGGAAGCAGAATTTTGCGAAGGCCCCTCGC
GATGATGGGGCATGGTCCAAGATTGTGGCACAAAAAGAAGCGCAAGTGCA
GGCAGAGAAGGAAAGCCAATGAATGCACCCGCCGCTTCATCGGCCACATC
CTGACTGTCAGCACGTGATTGACGCTCTGCTTTCGTGCCACCGTCAGCAT
CCCTTGGCCAAGTTTTGGGGGGCGTGCAACGAGGAGAAGTGGGCATTGGA
CAAATGCTTTCGGGTGGAGAAGGAAGACCGCCGGAAGCAGAATTTTGCGA
AGGCCCCTCGCGATGATGGGGCATGGTCCAAGATTGTGGCACAAAAAGAA
GCGCAAGTGCAGGCAGAGAAGGAAAGCCAATGA
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Synonyms
Publications