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Properties
| Property Name | Value |
|---|
| TranscriptId | 626920 |
| Track | FilteredModels2 |
| ProteinId | 626834 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_1 | supercontig | scaffold_1:803314..805830 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_1507 ID=mRNA_1507|Name=jgi.p|Nanoce1779_2|626834|organism=Nannochloropsis oceanica|type=mRNA|length=2399bp
TGCAGCTAAGGAGAGGGGAGGTCGACATGCGTGTTCCAACATTGGAAGCA
CCATTTTGTGGACGCGCTGCAGCATTTTTACAACCACCAAGTCCCGCTCC
ACCTCCTCCTATACAATACAGCCGCAAATCTAGCGCTTGAAGTGGGCTTA
TTTTCCTTCGTAGGGTTCTCCGACCCCCCATCTCCTTTGCTTCGACAGAT
TGTGCGAGGAGGTCGAACGCTGACTCGGCAGCCGCACTGTACGACCCAGC
TGAAGCATCCCCCATCACGCCCATCCACCCAATCACAGCACCATGGCACG
TTATATGCTCATCCCAGCACTCTTGTTGGCCTTTTCGTCGAGTCTGGCCG
ACGGCTTTCGATTGCCCCGCCTTTTGGGAGCATCAGCATCGTCCCCTTCC
CCCACAGCCCTGGAGGCCACCACGGCCACCTCGACCCCGAACCCGCAAGA
CCTGGCTGGTACCACCGGCACATGGAACTATGAGGGCTGGATCAAAGGCT
TTGAGACTGCGCGCACGGAGACATCGTACGAGATCAAGGACATTGTGGAG
GGCAGCATTCCCAAGGATCTGACTGGCACCCTTTTCCGTAATGGCCACGC
GAAGTTCGATGTGGAGGGGTTAGAAATTGCTCACCCTTTCGACGGCGACG
GAATGATAAGTGCCGTGACTTTTAAGGACGGTCGGGCCTTTTTCCGCAAC
CGCTTTGTTGAGACTGAGGGGTACAAGCGGGAGAAGCAGAGCAAAAAGAT
TGAATACCGTGGCACATTTGGCACTCAAAAGCCGGGGGGATGGATCAGGA
ACATCTTTGACACCCGCCGGAAAAATGTAGCGAATACAAATGTCATCTTT
TGGGGAAATCGCCTGCTGGCGTTGTGGGAGGGCGGGCTTCCGCATTTGAT
GGACCCAATGACCTTACAGACATTCGGAGAGTCCCGTCTCGCCAAGGTGT
TGAAAAGCAACCAGAACCTGTGTGCCCACCCTCGGTACGACCCGGCCACG
GACCGCTATGTATTTTTTTCGACTGACCCTGACCCGCGTAAGACCAAGGT
GACCCTGTACGAATTCGACAGGGATTTCAAATTGGTCGCCGAACGTTCGG
AGGACATGGAAGGTTTCTCCCTCCTCCACGACATGGTCATCACCCCCTCC
TACTACGTCTTCTTCAAAGCCCCCCTCACCCTCCAGCCCCTGTCCTGGCT
CCTCGGCCTCACGGGCGTTGCCTCCTGTATCAAATTCCAGGACTCCCAAC
CCGCCGTCGCCTACCTCATTCCTCGCTCCTCTCCCTCCAAGCCCATGATC
CCCATCCCCGTCGATCCGCACTTCTCCTTCCACTTCTCCAACGCCTACGA
CGACGCCTCCACCGGCGAGACTGTCGTTGATATCATCCGCGTCCCCAAGC
TCTACCTCACCGACACCAACGGCGTCACGGGCAATCCCATCTGGAAAACT
GTCAACTACGAGCAAAATGTTCCCAAATCGACCCTCTGGCGGTACAGGCT
CAACCCCTCTCTCGCCACCCACACCAAGCAAGAGCTTTGGAGCGTCTACT
GTGACTTCCCCTCCATCCCTGTGTCCCGTACCGGCCAACAGTATCGATAT
ACCTATCTCGCGGCTGGACGAGACCCTATTTTACCGACACCTGTAGGGGT
GGTGGCAAAATTCGACGTGGAGAAAGGAGAGTTGGTTGACGCCTGGACAG
CCGAGCCCAACGAATTTATCAGCGAGACAGTGGTGGTGCCGAAGGACAAG
GGCGGGAAAGAGGGAGCGGCGGAAGACGACGTATATCTGATGACATACGT
CTTTAATGGCGATACTTGTTTGTCGCAGATCTTGATCTTTGACGCGCAGA
GCTTGGGGAAAGGCCCGTTGGCGCGACTGCAGTTGAACTCCAATATCCCC
TTGTCACTGCACGGGACGTGGGCGCCAGATGCGGTGTATGAGGGAGAGGA
CATCCTGAGAAAATTCAAATGCTACTCGGGTGTATCCCGCTTCGGTAAGA
TTGAGTCAGGCATGGCGCCAATTTTTGAATTCTAGGCCGTGAGGAGGGAT
CAGAGGTCAGGCATGGCGCCGATTTTTGATTTTTGATTTCTAGGTTGTGA
GGAGGGATAAGAGGTGCCATTGTTAGTAGCTGGCTGGGGTGTGTGTTGCT
GTTGTTGCTGTTGTTGTTGTTGTCATTGTTGTTGTTGTACTTAGAGAAAA
TATCTGGAAGTGATGTTTTACTTGGCACGACACGTCTTTCTTTCTTGTAA
AAAAGAGATATATGCGCGTGTGTGTGATAGAATATGCAAAAGCGGAATTA
GAGAGGAAGAGAGGACAGATGGCGAGAGAGGGGAATGAAGGACGATGTAT
CAGTAGGGGAAGGTAGTTAAAAAAAGCAAACAAGCAAATTTATTTTTTC back to topprotein sequence of jgi.p|Nanoce1779_2|626834 >mRNA_1507-protein ID=mRNA_1507-protein|Name=jgi.p|Nanoce1779_2|626834|organism=Nannochloropsis oceanica|type=polypeptide|length=581bp
MARYMLIPALLLAFSSSLADGFRLPRLLGASASSPSPTALEATTATSTPN
PQDLAGTTGTWNYEGWIKGFETARTETSYEIKDIVEGSIPKDLTGTLFRN
GHAKFDVEGLEIAHPFDGDGMISAVTFKDGRAFFRNRFVETEGYKREKQS
KKIEYRGTFGTQKPGGWIRNIFDTRRKNVANTNVIFWGNRLLALWEGGLP
HLMDPMTLQTFGESRLAKVLKSNQNLCAHPRYDPATDRYVFFSTDPDPRK
TKVTLYEFDRDFKLVAERSEDMEGFSLLHDMVITPSYYVFFKAPLTLQPL
SWLLGLTGVASCIKFQDSQPAVAYLIPRSSPSKPMIPIPVDPHFSFHFSN
AYDDASTGETVVDIIRVPKLYLTDTNGVTGNPIWKTVNYEQNVPKSTLWR
YRLNPSLATHTKQELWSVYCDFPSIPVSRTGQQYRYTYLAAGRDPILPTP
VGVVAKFDVEKGELVDAWTAEPNEFISETVVVPKDKGGKEGAAEDDVYLM
TYVFNGDTCLSQILIFDAQSLGKGPLARLQLNSNIPLSLHGTWAPDAVYE
GEDILRKFKCYSGVSRFGKIESGMAPIFEF* back to topmRNA from alignment at scaffold_1:803314..805830- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_1507 ID=mRNA_1507|Name=jgi.p|Nanoce1779_2|626834|organism=Nannochloropsis oceanica|type=mRNA|length=2517bp|location=Sequence derived from alignment at scaffold_1:803314..805830- (Nannochloropsis oceanica)
TGCAGCTAAGGAGAGGGGAGGTCGACATGCGTGTTCCAACATTGGAAGCA
CCATTTTGTGGACGCGCTGCAGCATTTTTACAACCACCAAGTCCCGCTCC
ACCTCCTCCTATACAATACAGCCGCAAATCTAGCGCTTGAAGTGGGCTTA
TTTTCCTTCGTAGGGTTCTCCGACCCCCCATCTCCTTTGCTTCGACAGAT
TGTGCGAGGAGGTCGAACGCTGACTCGGCAGCCGCACTGTACGACCCAGC
TGAAGCATCCCCCATCACGCCCATCCACCCAATCACAGCACCATGGCACG
TTATATGCTCATCCCAGCACTCTTGTTGGCCTTTTCGTCGAGTCTGGCCG
ACGGCTTTCGATTGCCCCGCCTTTTGGGAGCATCAGCATCGTCCCCTTCC
CCCACAGCCCTGGAGGCCACCACGGCCACCTCGACCCCGAACCCGCAAGA
CCTGGCTGGTACCACCGGCACATGGAACTATGAGGGCTGGATCAAAGGCT
TTGAGACTGCGCGCACGGAGACATCGTACGAGATCAAGGACATTGTGGAG
GGCAGCATTCCCAAGGATCTGACTGGCACCCTTTTCCGTAATGGCCACGC
GAAGTTCGATGTGGAGGGGTTAGAAATTGCTCACCCTTTCGACGGCGACG
GAATGATAAGTGCCGTGACTTTTAAGGACGGTCGGGCCTTTTTCCGCAAC
CGCTTTGTTGAGACTGAGGGGTACAAGCGGGAGAAGCAGAGCAAAAAGAT
TGAATACCGTGGCACATTTGGCACTCAAAAGCCGGGGGGATGGATCAGGA
ACATCTTTGACACCCGCCGGAAAAATGTAGCGAATACAAATGTCATCTTT
TGGGGAAATCGCCTGCTGGCGTTGTGGGAGGGCGGGCTTCCGCATTTGAT
GGACCCAATGACCTTACAGACATTCGGAGAGTCCCGTCTCGCCAAGGTGT
TGAAAAGCAACCAGAACCTGTGTGCCCACCCTCGGTACGACCCGGCCACG
GACCGCTATGTATTTTTTTCGACTGACCCTGACCCGCGTAAGACCAAGGT
GACCCTGTACGAATTCGACAGGGATTTCAAGTGAGTAGAATGGTGGGAAG
GGAGAGTAGGAGAGAGGGGAGGTAGCTTACTTCATGAATCCGTAACGCAT
ACCTCACACAGAGAGACTCATTGTCTCTTCCCCCCACCCTTACCGCAGAT
TGGTCGCCGAACGTTCGGAGGACATGGAAGGTTTCTCCCTCCTCCACGAC
ATGGTCATCACCCCCTCCTACTACGTCTTCTTCAAAGCCCCCCTCACCCT
CCAGCCCCTGTCCTGGCTCCTCGGCCTCACGGGCGTTGCCTCCTGTATCA
AATTCCAGGACTCCCAACCCGCCGTCGCCTACCTCATTCCTCGCTCCTCT
CCCTCCAAGCCCATGATCCCCATCCCCGTCGATCCGCACTTCTCCTTCCA
CTTCTCCAACGCCTACGACGACGCCTCCACCGGCGAGACTGTCGTTGATA
TCATCCGCGTCCCCAAGCTCTACCTCACCGACACCAACGGCGTCACGGGC
AATCCCATCTGGAAAACTGTCAACTACGAGCAAAATGTTCCCAAATCGAC
CCTCTGGCGGTACAGGCTCAACCCCTCTCTCGCCACCCACACCAAGCAAG
AGCTTTGGAGCGTCTACTGTGACTTCCCCTCCATCCCTGTGTCCCGTACC
GGCCAACAGTATCGATATACCTATCTCGCGGCTGGACGAGACCCTATTTT
ACCGACACCTGTAGGGGTGGTGGCAAAATTCGACGTGGAGAAAGGAGAGT
TGGTTGACGCCTGGACAGCCGAGCCCAACGAATTTATCAGCGAGACAGTG
GTGGTGCCGAAGGACAAGGGCGGGAAAGAGGGAGCGGCGGAAGACGACGT
ATATCTGATGACATACGTCTTTAATGGCGATACTTGTTTGTCGCAGATCT
TGATCTTTGACGCGCAGAGCTTGGGGAAAGGCCCGTTGGCGCGACTGCAG
TTGAACTCCAATATCCCCTTGTCACTGCACGGGACGTGGGCGCCAGATGC
GGTGTATGAGGGAGAGGACATCCTGAGAAAATTCAAATGCTACTCGGGTG
TATCCCGCTTCGGTAAGATTGAGTCAGGCATGGCGCCAATTTTTGAATTC
TAGGCCGTGAGGAGGGATCAGAGGTCAGGCATGGCGCCGATTTTTGATTT
TTGATTTCTAGGTTGTGAGGAGGGATAAGAGGTGCCATTGTTAGTAGCTG
GCTGGGGTGTGTGTTGCTGTTGTTGCTGTTGTTGTTGTTGTCATTGTTGT
TGTTGTACTTAGAGAAAATATCTGGAAGTGATGTTTTACTTGGCACGACA
CGTCTTTCTTTCTTGTAAAAAAGAGATATATGCGCGTGTGTGTGATAGAA
TATGCAAAAGCGGAATTAGAGAGGAAGAGAGGACAGATGGCGAGAGAGGG
GAATGAAGGACGATGTATCAGTAGGGGAAGGTAGTTAAAAAAAGCAAACA
AGCAAATTTATTTTTTC back to topCoding sequence (CDS) from alignment at scaffold_1:803314..805830- >mRNA_1507 ID=mRNA_1507|Name=jgi.p|Nanoce1779_2|626834|organism=Nannochloropsis oceanica|type=CDS|length=3486bp|location=Sequence derived from alignment at scaffold_1:803314..805830- (Nannochloropsis oceanica)
ATTGGTCGCCGAACGTTCGGAGGACATGGAAGGTTTCTCCCTCCTCCACG
ACATGGTCATCACCCCCTCCTACTACGTCTTCTTCAAAGCCCCCCTCACC
CTCCAGCCCCTGTCCTGGCTCCTCGGCCTCACGGGCGTTGCCTCCTGTAT
CAAATTCCAGGACTCCCAACCCGCCGTCGCCTACCTCATTCCTCGCTCCT
CTCCCTCCAAGCCCATGATCCCCATCCCCGTCGATCCGCACTTCTCCTTC
CACTTCTCCAACGCCTACGACGACGCCTCCACCGGCGAGACTGTCGTTGA
TATCATCCGCGTCCCCAAGCTCTACCTCACCGACACCAACGGCGTCACGG
GCAATCCCATCTGGAAAACTGTCAACTACGAGCAAAATGTTCCCAAATCG
ACCCTCTGGCGGTACAGGCTCAACCCCTCTCTCGCCACCCACACCAAGCA
AGAGCTTTGGAGCGTCTACTGTGACTTCCCCTCCATCCCTGTGTCCCGTA
CCGGCCAACAGTATCGATATACCTATCTCGCGGCTGGACGAGACCCTATT
TTACCGACACCTGTAGGGGTGGTGGCAAAATTCGACGTGGAGAAAGGAGA
GTTGGTTGACGCCTGGACAGCCGAGCCCAACGAATTTATCAGCGAGACAG
TGGTGGTGCCGAAGGACAAGGGCGGGAAAGAGGGAGCGGCGGAAGACGAC
GTATATCTGATGACATACGTCTTTAATGGCGATACTTGTTTGTCGCAGAT
CTTGATCTTTGACGCGCAGAGCTTGGGGAAAGGCCCGTTGGCGCGACTGC
AGTTGAACTCCAATATCCCCTTGTCACTGCACGGGACGTGGGCGCCAGAT
GCGGTGTATGAGGGAGAGGACATCCTGAGAAAATTCAAATGCTACTCGGG
TGTATCCCGCTTCGGTAAGATTGAGTCAGGCATGGCGCCAATTTTTGAAT
TCTAGATGGCACGTTATATGCTCATCCCAGCACTCTTGTTGGCCTTTTCG
TCGAGTCTGGCCGACGGCTTTCGATTGCCCCGCCTTTTGGGAGCATCAGC
ATCGTCCCCTTCCCCCACAGCCCTGGAGGCCACCACGGCCACCTCGACCC
CGAACCCGCAAGACCTGGCTGGTACCACCGGCACATGGAACTATGAGGGC
TGGATCAAAGGCTTTGAGACTGCGCGCACGGAGACATCGTACGAGATCAA
GGACATTGTGGAGGGCAGCATTCCCAAGGATCTGACTGGCACCCTTTTCC
GTAATGGCCACGCGAAGTTCGATGTGGAGGGGTTAGAAATTGCTCACCCT
TTCGACGGCGACGGAATGATAAGTGCCGTGACTTTTAAGGACGGTCGGGC
CTTTTTCCGCAACCGCTTTGTTGAGACTGAGGGGTACAAGCGGGAGAAGC
AGAGCAAAAAGATTGAATACCGTGGCACATTTGGCACTCAAAAGCCGGGG
GGATGGATCAGGAACATCTTTGACACCCGCCGGAAAAATGTAGCGAATAC
AAATGTCATCTTTTGGGGAAATCGCCTGCTGGCGTTGTGGGAGGGCGGGC
TTCCGCATTTGATGGACCCAATGACCTTACAGACATTCGGAGAGTCCCGT
CTCGCCAAGGTGTTGAAAAGCAACCAGAACCTGTGTGCCCACCCTCGGTA
CGACCCGGCCACGGACCGCTATGTATTTTTTTCGACTGACCCTGACCCGC
GTAAGACCAAGGTGACCCTGTACGAATTCGACAGGGATTTCAAATTGGTC
GCCGAACGTTCGGAGGACATGGAAGGTTTCTCCCTCCTCCACGACATGGT
CATCACCCCCTCCTACTACGTCTTCTTCAAAGCCCCCCTCACCCTCCAGC
CCCTGTCCTGGCTCCTCGGCCTCACGGGCGTTGCCTCCTGTATCAAATTC
CAGGACTCCCAACCCGCCGTCGCCTACCTCATTCCTCGCTCCTCTCCCTC
CAAGCCCATGATCCCCATCCCCGTCGATCCGCACTTCTCCTTCCACTTCT
CCAACGCCTACGACGACGCCTCCACCGGCGAGACTGTCGTTGATATCATC
CGCGTCCCCAAGCTCTACCTCACCGACACCAACGGCGTCACGGGCAATCC
CATCTGGAAAACTGTCAACTACGAGCAAAATGTTCCCAAATCGACCCTCT
GGCGGTACAGGCTCAACCCCTCTCTCGCCACCCACACCAAGCAAGAGCTT
TGGAGCGTCTACTGTGACTTCCCCTCCATCCCTGTGTCCCGTACCGGCCA
ACAGTATCGATATACCTATCTCGCGGCTGGACGAGACCCTATTTTACCGA
CACCTGTAGGGGTGGTGGCAAAATTCGACGTGGAGAAAGGAGAGTTGGTT
GACGCCTGGACAGCCGAGCCCAACGAATTTATCAGCGAGACAGTGGTGGT
GCCGAAGGACAAGGGCGGGAAAGAGGGAGCGGCGGAAGACGACGTATATC
TGATGACATACGTCTTTAATGGCGATACTTGTTTGTCGCAGATCTTGATC
TTTGACGCGCAGAGCTTGGGGAAAGGCCCGTTGGCGCGACTGCAGTTGAA
CTCCAATATCCCCTTGTCACTGCACGGGACGTGGGCGCCAGATGCGGTGT
ATGAGGGAGAGGACATCCTGAGAAAATTCAAATGCTACTCGGGTGTATCC
CGCTTCGGTAAGATTGAGTCAGGCATGGCGCCAATTTTTGAATTCTAGAT
GGCACGTTATATGCTCATCCCAGCACTCTTGTTGGCCTTTTCGTCGAGTC
TGGCCGACGGCTTTCGATTGCCCCGCCTTTTGGGAGCATCAGCATCGTCC
CCTTCCCCCACAGCCCTGGAGGCCACCACGGCCACCTCGACCCCGAACCC
GCAAGACCTGGCTGGTACCACCGGCACATGGAACTATGAGGGCTGGATCA
AAGGCTTTGAGACTGCGCGCACGGAGACATCGTACGAGATCAAGGACATT
GTGGAGGGCAGCATTCCCAAGGATCTGACTGGCACCCTTTTCCGTAATGG
CCACGCGAAGTTCGATGTGGAGGGGTTAGAAATTGCTCACCCTTTCGACG
GCGACGGAATGATAAGTGCCGTGACTTTTAAGGACGGTCGGGCCTTTTTC
CGCAACCGCTTTGTTGAGACTGAGGGGTACAAGCGGGAGAAGCAGAGCAA
AAAGATTGAATACCGTGGCACATTTGGCACTCAAAAGCCGGGGGGATGGA
TCAGGAACATCTTTGACACCCGCCGGAAAAATGTAGCGAATACAAATGTC
ATCTTTTGGGGAAATCGCCTGCTGGCGTTGTGGGAGGGCGGGCTTCCGCA
TTTGATGGACCCAATGACCTTACAGACATTCGGAGAGTCCCGTCTCGCCA
AGGTGTTGAAAAGCAACCAGAACCTGTGTGCCCACCCTCGGTACGACCCG
GCCACGGACCGCTATGTATTTTTTTCGACTGACCCTGACCCGCGTAAGAC
CAAGGTGACCCTGTACGAATTCGACAGGGATTTCAA back to top
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